Wall clock time and date at job start Wed Apr 1 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00074 * 2 1 4 4 C 1.52999 * 109.47511 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47057 * 64.99854 * 4 3 2 6 6 C 1.34559 * 119.77897 * 270.02746 * 5 4 3 7 7 O 1.21294 * 119.62201 * 0.79658 * 6 5 4 8 8 C 1.50469 * 120.75316 * 180.82899 * 6 5 4 9 9 C 1.52899 * 109.91342 * 324.72097 * 8 6 5 10 10 C 1.50675 * 109.52755 * 48.66946 * 9 8 6 11 11 C 1.38029 * 120.12604 * 146.06340 * 10 9 8 12 12 C 1.38853 * 119.97830 * 179.97438 * 11 10 9 13 13 N 1.40112 * 120.00512 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99731 * 33.29129 * 13 12 11 15 15 O 1.21588 * 120.00020 * 5.31604 * 14 13 12 16 16 N 1.34773 * 120.00084 * 185.31875 * 14 13 12 17 17 C 1.46500 * 120.00129 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47238 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00424 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00236 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00088 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47200 * 59.99783 * 22 20 18 24 24 H 1.48499 * 109.47143 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47030 * 299.99641 * 22 20 18 26 26 C 1.38880 * 119.99924 * 359.97438 * 12 11 10 27 27 C 1.38041 * 120.01475 * 0.02562 * 26 12 11 28 28 C 1.38859 * 119.83457 * 326.04171 * 10 9 8 29 29 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47453 * 300.00374 * 1 2 3 31 31 H 1.08995 * 109.46678 * 60.00452 * 1 2 3 32 32 H 1.09005 * 109.47100 * 59.99834 * 3 2 1 33 33 H 1.09002 * 109.46917 * 299.99770 * 3 2 1 34 34 H 1.09005 * 109.46882 * 305.00067 * 4 3 2 35 35 H 1.09000 * 109.47412 * 184.99568 * 4 3 2 36 36 H 1.08998 * 109.37434 * 204.59938 * 8 6 5 37 37 H 1.08996 * 109.41821 * 84.87124 * 8 6 5 38 38 H 1.09007 * 109.46283 * 288.65778 * 9 8 6 39 39 H 1.08997 * 109.46484 * 168.68547 * 9 8 6 40 40 H 1.08008 * 120.01446 * 359.95396 * 11 10 9 41 41 H 0.96998 * 120.00248 * 213.28992 * 13 12 11 42 42 H 0.97000 * 120.00109 * 359.97438 * 16 14 13 43 43 H 1.08996 * 109.47120 * 299.99748 * 17 16 14 44 44 H 1.08996 * 109.47198 * 59.99917 * 17 16 14 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.08000 * 119.99400 * 180.02562 * 26 12 11 47 47 H 1.07997 * 120.00537 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0937 -0.7743 -1.3282 7 8 3.8186 -1.4568 -0.3640 8 6 4.5628 -1.4336 -2.5968 9 6 4.0382 -0.6631 -3.8089 10 6 4.3137 0.8072 -3.6288 11 6 4.6052 1.5965 -4.7230 12 6 4.8581 2.9513 -4.5536 13 7 5.1546 3.7529 -5.6638 14 6 4.5876 3.4874 -6.8574 15 8 3.7464 2.6144 -6.9500 16 7 4.9531 4.1894 -7.9482 17 6 4.3372 3.9004 -9.2456 18 6 4.9153 4.8182 -10.2917 19 1 5.6668 5.5440 -10.0177 20 6 4.4850 4.7315 -11.5987 21 7 3.5704 3.8475 -11.9327 22 14 5.2022 5.8687 -12.8956 23 1 6.6688 5.6541 -12.9858 24 1 4.5778 5.5759 -14.2108 25 1 4.9305 7.2799 -12.5214 26 6 4.8171 3.5118 -3.2836 27 6 4.5256 2.7223 -2.1894 28 6 4.2733 1.3672 -2.3588 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9785 2.1766 0.0901 36 1 4.1916 -2.4578 -2.6306 37 1 5.6525 -1.4439 -2.6183 38 1 2.9640 -0.8224 -3.9033 39 1 4.5385 -1.0187 -4.7096 40 1 4.6370 1.1605 -5.7106 41 1 5.7679 4.4990 -5.5735 42 1 5.6239 4.8861 -7.8742 43 1 4.5370 2.8647 -9.5200 44 1 3.2606 4.0576 -9.1798 45 1 3.2674 3.7867 -12.8521 46 1 5.0134 4.5656 -3.1520 47 1 4.4934 3.1584 -1.2020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488671653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:17 Heat of formation + Delta-G solvation = -102.239201 kcal Electronic energy + Delta-G solvation = -30140.681243 eV Core-core repulsion = 25901.567944 eV Total energy + Delta-G solvation = -4239.113299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.23886 -41.28349 -39.51245 -38.79038 -37.10067 -36.07990 -35.77418 -34.77879 -34.16996 -31.49553 -30.74552 -29.95712 -28.59406 -27.35323 -25.65716 -25.07855 -24.53369 -23.54218 -22.43810 -21.77322 -20.19898 -19.81784 -18.83268 -18.21193 -17.94142 -17.84088 -17.25880 -17.14757 -16.74326 -16.51509 -16.32798 -15.99661 -15.78540 -15.57192 -15.26230 -15.07456 -14.76847 -14.72589 -14.30306 -14.09134 -14.01353 -13.97547 -13.68281 -13.36207 -13.10734 -12.90731 -12.88657 -12.74593 -12.66875 -12.61228 -12.22101 -12.17654 -11.92241 -11.70953 -11.48939 -11.20874 -10.93933 -10.78100 -10.61921 -10.39244 -9.82728 -9.74598 -8.47375 -8.27311 -6.43582 0.18215 0.38926 1.44856 1.48921 1.53797 1.56820 1.72880 1.84765 2.16483 2.40313 2.82053 2.87943 3.08046 3.35847 3.47720 3.69996 3.76674 3.96948 4.03548 4.05805 4.19666 4.29264 4.33404 4.34510 4.38860 4.45884 4.49797 4.51045 4.76846 4.79100 4.80507 4.84359 4.88737 4.99941 5.04088 5.12057 5.14847 5.27919 5.38465 5.47026 5.55194 5.64143 5.68168 5.84954 5.97733 6.21565 6.23287 6.33839 6.67633 7.00713 7.21504 7.27590 7.64452 8.84553 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.001991 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.727657 B =14057.632851 C =14136.083917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.039 3.961 4 C 0.102 3.898 5 N -0.545 5.545 6 C 0.515 3.485 7 O -0.550 6.550 8 C -0.130 4.130 9 C -0.075 4.075 10 C -0.109 4.109 11 C -0.106 4.106 12 C 0.137 3.863 13 N -0.672 5.672 14 C 0.690 3.310 15 O -0.627 6.627 16 N -0.716 5.716 17 C 0.286 3.714 18 C -0.555 4.555 19 H 0.085 0.915 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.984 3.016 23 H -0.262 1.262 24 H -0.287 1.287 25 H -0.262 1.262 26 C -0.108 4.108 27 C -0.122 4.122 28 C 0.132 3.868 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.424 0.576 42 H 0.407 0.593 43 H -0.011 1.011 44 H -0.013 1.013 45 H 0.269 0.731 46 H 0.165 0.835 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -0.501 25.991 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.038 4.038 4 C -0.019 4.019 5 N -0.269 5.269 6 C 0.306 3.694 7 O -0.427 6.427 8 C -0.169 4.169 9 C -0.112 4.112 10 C -0.112 4.112 11 C -0.128 4.128 12 C 0.041 3.959 13 N -0.321 5.321 14 C 0.391 3.609 15 O -0.507 6.507 16 N -0.370 5.370 17 C 0.163 3.837 18 C -0.593 4.593 19 H 0.103 0.897 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.213 1.213 25 H -0.186 1.186 26 C -0.129 4.129 27 C -0.143 4.143 28 C 0.037 3.963 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.262 0.738 42 H 0.243 0.757 43 H 0.007 0.993 44 H 0.005 0.995 45 H 0.077 0.923 46 H 0.182 0.818 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.586 -1.917 26.240 26.436 hybrid contribution 0.081 0.909 -1.227 1.529 sum 2.667 -1.008 25.013 25.175 Atomic orbital electron populations 1.22827 0.80293 1.03113 1.00562 1.88031 1.20666 1.28442 1.95517 1.23100 0.93871 0.85091 1.01741 1.21982 0.93060 1.01239 0.85638 1.45430 1.63470 1.05929 1.12057 1.21021 0.76207 0.81724 0.90445 1.90711 1.49289 1.62748 1.39957 1.21690 1.04217 1.00865 0.90158 1.20394 1.02037 0.89972 0.98775 1.19433 1.04016 0.96669 0.91129 1.20798 1.00984 0.92739 0.98244 1.17729 1.01612 0.89590 0.86922 1.42429 1.49092 1.34488 1.06114 1.16271 0.81326 0.82123 0.81208 1.90876 1.37418 1.36968 1.85479 1.45318 1.44751 1.39550 1.07346 1.18434 0.91806 0.94984 0.78518 1.21573 1.24435 1.19941 0.93359 0.89678 1.26039 0.95040 0.97268 1.01193 1.70128 1.30703 1.36250 1.19800 0.85219 0.78728 0.78681 0.76652 1.18681 1.21296 1.18636 1.20956 1.01510 1.01291 0.89184 1.20879 1.02254 0.90685 1.00458 1.17735 1.01179 0.91836 0.85508 0.89727 0.92400 0.94251 0.89523 0.93290 0.89294 0.84593 0.86775 0.86546 0.90837 0.88499 0.87018 0.73769 0.75707 0.99345 0.99456 0.92267 0.81792 0.81506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -9.49 9.41 -139.58 -1.31 -10.81 16 3 C 0.04 0.64 6.28 71.98 0.45 1.09 16 4 C 0.10 1.57 5.61 86.38 0.48 2.06 16 5 N -0.55 -11.26 2.68 -631.75 -1.69 -12.96 16 6 C 0.52 12.68 7.09 87.62 0.62 13.31 16 7 O -0.55 -16.99 15.74 6.32 0.10 -16.89 16 8 C -0.13 -2.55 6.07 29.74 0.18 -2.37 16 9 C -0.07 -1.65 5.99 29.81 0.18 -1.47 16 10 C -0.11 -2.72 5.65 -19.77 -0.11 -2.83 16 11 C -0.11 -3.14 8.29 22.37 0.19 -2.96 16 12 C 0.14 3.52 6.28 38.12 0.24 3.76 16 13 N -0.67 -18.04 5.35 -317.05 -1.70 -19.74 16 14 C 0.69 27.00 8.30 179.06 1.49 28.48 16 15 O -0.63 -30.48 14.03 -3.99 -0.06 -30.54 16 16 N -0.72 -28.98 5.55 -482.31 -2.68 -31.66 16 17 C 0.29 15.26 5.43 85.63 0.46 15.72 16 18 C -0.56 -29.29 9.28 25.60 0.24 -29.05 16 19 H 0.09 4.00 7.60 -2.91 -0.02 3.98 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 22 Si 0.98 41.30 29.54 68.60 2.03 43.33 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 C -0.11 -1.86 9.95 22.38 0.22 -1.64 16 27 C -0.12 -1.89 9.33 22.38 0.21 -1.68 16 28 C 0.13 2.74 6.33 38.14 0.24 2.98 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 1.59 7.40 -2.38 -0.02 1.57 16 35 H 0.14 1.00 5.81 -2.39 -0.01 0.98 16 36 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.10 2.00 8.06 -2.39 -0.02 1.98 16 40 H 0.11 4.05 6.41 -2.91 -0.02 4.03 16 41 H 0.42 7.70 8.83 -92.71 -0.82 6.88 16 42 H 0.41 13.17 8.34 -92.71 -0.77 12.40 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 45 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.17 1.29 6.01 -2.91 -0.02 1.27 16 Total: -1.00 -80.79 389.52 1.21 -79.59 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.57 Total: 26.80 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 6.80 Total: 27.83 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -5.78 Total: -119.30 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -1.27 Total: -58.24 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -80.79 1.21 -79.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488671653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.653 kcal (2) G-P(sol) polarization free energy of solvation -80.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds