Wall clock time and date at job start Wed Apr 1 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 117.00126 * 2 1 4 4 O 1.20829 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99895 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46927 * 59.99837 * 5 3 2 7 7 C 1.52997 * 109.47212 * 299.99697 * 5 3 2 8 8 C 1.52995 * 109.47362 * 174.87560 * 7 5 3 9 9 C 1.52998 * 109.47153 * 294.10396 * 8 7 5 10 10 C 1.52995 * 109.47153 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47392 * 59.99649 * 10 9 8 12 12 C 1.52998 * 109.47258 * 300.00286 * 11 10 9 13 13 C 1.52995 * 109.47153 * 59.99567 * 12 11 10 14 14 N 1.46506 * 109.46956 * 179.97438 * 5 3 2 15 15 S 1.65593 * 120.00064 * 264.99888 * 14 5 3 16 16 O 1.42102 * 104.27713 * 181.07339 * 15 14 5 17 17 O 1.42100 * 104.27918 * 308.93040 * 15 14 5 18 18 C 1.81401 * 104.44833 * 65.00237 * 15 14 5 19 19 C 1.53007 * 109.47002 * 179.97438 * 18 15 14 20 20 C 1.50700 * 109.47036 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00104 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99804 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00216 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46569 * 90.00739 * 24 22 20 26 26 H 1.48502 * 109.47203 * 210.00149 * 24 22 20 27 27 H 1.48497 * 109.47199 * 330.00526 * 24 22 20 28 28 H 1.08993 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46631 * 300.00434 * 1 2 3 30 30 H 1.08993 * 109.47200 * 59.99705 * 1 2 3 31 31 H 1.09005 * 109.47138 * 54.87202 * 7 5 3 32 32 H 1.09004 * 109.47047 * 294.88064 * 7 5 3 33 33 H 1.09003 * 109.46876 * 54.10261 * 8 7 5 34 34 H 1.09000 * 109.47317 * 59.99319 * 9 8 7 35 35 H 1.09005 * 109.46602 * 299.99721 * 9 8 7 36 36 H 1.09002 * 109.47332 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.47177 * 299.99306 * 10 9 8 38 38 H 1.09005 * 109.47188 * 59.99773 * 11 10 9 39 39 H 1.09007 * 109.47381 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47317 * 180.02562 * 12 11 10 41 41 H 1.09003 * 109.47120 * 299.99851 * 12 11 10 42 42 H 1.08995 * 109.47177 * 60.00694 * 13 12 11 43 43 H 1.09002 * 109.47332 * 180.02562 * 13 12 11 44 44 H 0.97000 * 119.99686 * 84.99673 * 14 5 3 45 45 H 1.08996 * 109.47411 * 299.99739 * 18 15 14 46 46 H 1.09001 * 109.47497 * 59.99866 * 18 15 14 47 47 H 1.09006 * 109.46930 * 300.00097 * 19 18 15 48 48 H 1.09001 * 109.47068 * 59.99647 * 19 18 15 49 49 H 0.96997 * 120.00875 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8908 7 6 4.1139 0.5810 1.2483 8 6 5.6422 0.5483 1.1850 9 6 6.0856 -0.3431 0.0233 10 6 7.6139 -0.3753 -0.0404 11 6 8.1674 -0.9345 1.2717 12 6 7.7241 -0.0430 2.4334 13 6 6.1958 -0.0109 2.4971 14 7 3.9818 2.6797 -0.0011 15 16 4.3359 3.4379 -1.4300 16 8 4.7163 4.7517 -1.0447 17 8 5.2578 2.5664 -2.0702 18 6 2.7604 3.4691 -2.3284 19 6 2.9587 4.1541 -3.6822 20 6 1.6496 4.1806 -4.4283 21 1 0.7648 3.7513 -3.9819 22 6 1.5818 4.7518 -5.6813 23 7 0.4395 4.7745 -6.3327 24 14 3.1123 5.4936 -6.4538 25 1 3.8241 4.4534 -7.2390 26 1 2.7222 6.6106 -7.3511 27 1 4.0072 6.0063 -5.3854 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.7303 -0.4382 1.2954 32 1 3.7987 1.1292 2.1362 33 1 6.0212 1.5589 1.0326 34 1 5.6916 0.0555 -0.9116 35 1 5.7066 -1.3537 0.1757 36 1 7.9298 -1.0108 -0.8678 37 1 7.9925 0.6353 -0.1931 38 1 7.7888 -1.9452 1.4244 39 1 9.2563 -0.9570 1.2265 40 1 8.1188 -0.4412 3.3681 41 1 8.1027 0.9677 2.2808 42 1 5.8172 -1.0215 2.6498 43 1 5.8799 0.6246 3.3245 44 1 4.0494 3.1657 0.8356 45 1 2.4111 2.4485 -2.4850 46 1 2.0215 4.0208 -1.7473 47 1 3.3077 5.1748 -3.5252 48 1 3.6977 3.6028 -4.2636 49 1 0.3916 5.1767 -7.2141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494310181.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:03 Heat of formation + Delta-G solvation = -190.813600 kcal Electronic energy + Delta-G solvation = -30462.585554 eV Core-core repulsion = 26322.782581 eV Total energy + Delta-G solvation = -4139.802973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.75675 -39.06397 -36.96358 -36.70614 -35.78042 -35.55770 -33.92462 -32.24577 -31.46090 -30.90360 -29.22715 -27.35319 -25.96021 -24.72467 -22.80482 -21.51384 -21.24840 -20.88329 -19.88899 -19.23694 -18.01783 -17.52235 -17.25278 -16.89693 -16.38183 -15.88156 -15.51123 -15.48244 -14.92452 -14.67647 -14.39510 -14.28894 -14.13462 -13.78829 -13.63098 -13.48675 -12.90318 -12.80550 -12.68077 -12.36498 -12.27300 -12.05772 -11.87931 -11.79272 -11.73073 -11.64375 -11.53897 -11.27128 -11.24207 -11.20472 -11.05771 -10.96278 -10.85711 -10.62408 -10.43375 -10.29279 -10.14039 -10.10917 -9.85326 -9.50998 -9.24082 -8.64441 -6.14343 -4.15270 0.60028 2.03880 2.38376 2.98423 3.27359 3.34701 3.39007 4.06101 4.19217 4.36676 4.37379 4.49954 4.53223 4.63135 4.72084 4.75480 4.92885 5.02424 5.10647 5.12997 5.16938 5.19645 5.22169 5.32649 5.37086 5.39922 5.46307 5.49825 5.52096 5.58225 5.63908 5.71594 5.75064 5.87860 5.97261 6.02706 6.06684 6.13476 6.21121 6.26084 6.34245 6.35682 6.82410 6.85166 6.96071 7.56787 7.60469 8.39798 8.87810 9.45156 10.98188 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003588 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.715257 B = 7802.764249 C = 9208.532597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.434 3.566 4 O -0.484 6.484 5 C 0.161 3.839 6 H 0.134 0.866 7 C -0.111 4.111 8 C -0.088 4.088 9 C -0.123 4.123 10 C -0.120 4.120 11 C -0.120 4.120 12 C -0.120 4.120 13 C -0.112 4.112 14 N -1.099 6.099 15 S 2.584 3.416 16 O -0.960 6.960 17 O -0.960 6.960 18 C -0.575 4.575 19 C -0.006 4.006 20 C -0.517 4.517 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.869 3.131 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.262 1.262 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.420 0.580 45 H 0.116 0.884 46 H 0.135 0.865 47 H 0.033 0.967 48 H 0.028 0.972 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -14.452 19.427 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.273 3.727 4 O -0.369 6.369 5 C 0.050 3.950 6 H 0.152 0.848 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.160 4.160 10 C -0.157 4.157 11 C -0.157 4.157 12 C -0.158 4.158 13 C -0.150 4.150 14 N -0.855 5.855 15 S 2.681 3.319 16 O -0.950 6.950 17 O -0.950 6.950 18 C -0.709 4.709 19 C -0.046 4.046 20 C -0.556 4.556 21 H 0.096 0.904 22 C -0.131 4.131 23 N -0.534 5.534 24 Si 0.695 3.305 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.186 1.186 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.254 0.746 45 H 0.134 0.866 46 H 0.153 0.847 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.738 -13.868 18.875 25.366 hybrid contribution -0.426 0.569 -0.197 0.738 sum 9.311 -13.300 18.678 24.748 Atomic orbital electron populations 1.23326 0.75996 1.03744 1.03018 1.86475 1.23684 1.33095 1.84037 1.24602 0.92747 0.81995 0.73378 1.90730 1.66663 1.36123 1.43418 1.20415 0.86211 0.83942 1.04391 0.84848 1.21868 0.96513 1.01477 0.95128 1.21186 0.93162 1.00778 0.95557 1.21709 0.96019 0.99605 0.98697 1.21505 0.95649 1.01579 0.96989 1.21553 1.00022 0.99102 0.95042 1.21530 0.95746 1.00313 0.98186 1.21562 0.95519 1.01167 0.96731 1.55737 1.84561 1.18820 1.26368 1.05886 0.78353 0.73777 0.73845 1.93573 1.82454 1.37981 1.81021 1.93558 1.59871 1.66496 1.75055 1.30282 1.19065 1.10212 1.11313 1.19423 1.00267 0.95600 0.89266 1.20841 0.94002 1.39472 1.01258 0.90439 1.24984 0.96094 0.95238 0.96798 1.69879 1.24944 1.44844 1.13768 0.86929 0.83845 0.79699 0.80009 1.19657 1.20744 1.18615 0.88049 0.91922 0.91251 0.89017 0.90478 0.90249 0.90644 0.91816 0.91958 0.91741 0.92154 0.92367 0.92268 0.91966 0.91839 0.92058 0.74586 0.86578 0.84722 0.94927 0.95431 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.00 10.37 -39.25 -0.41 -4.40 16 3 C 0.43 5.50 6.72 36.01 0.24 5.74 16 4 O -0.48 -7.54 14.70 -18.75 -0.28 -7.81 16 5 C 0.16 1.77 2.59 -69.08 -0.18 1.59 16 6 H 0.13 1.45 5.71 -51.93 -0.30 1.15 16 7 C -0.11 -0.89 4.24 -26.73 -0.11 -1.00 16 8 C -0.09 -0.75 2.13 -90.62 -0.19 -0.94 16 9 C -0.12 -1.14 4.98 -26.73 -0.13 -1.27 16 10 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 11 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 12 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 13 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 14 N -1.10 -13.73 4.21 -5.88 -0.02 -13.76 16 15 S 2.58 44.26 5.44 -107.50 -0.58 43.68 16 16 O -0.96 -19.06 18.08 -57.54 -1.04 -20.10 16 17 O -0.96 -17.63 17.39 -57.54 -1.00 -18.63 16 18 C -0.58 -11.34 4.72 37.16 0.18 -11.16 16 19 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 20 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 21 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 24 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.09 0.63 7.99 -51.93 -0.41 0.21 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.77 7.60 -51.93 -0.39 0.38 16 34 H 0.07 0.82 6.49 -51.93 -0.34 0.48 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.42 4.34 8.80 -34.47 -0.30 4.04 16 45 H 0.12 2.14 7.70 -51.93 -0.40 1.74 16 46 H 0.13 2.64 7.80 -51.92 -0.41 2.23 16 47 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 48 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 49 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -35.37 399.47 -9.90 -45.28 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.40 Total: 2.72 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -0.29 Total: -23.35 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.75 Total: -40.44 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -2.72 Total: -50.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 44.26 SS G_CDS: -0.58 Total: 43.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.37 -9.90 -45.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494310181.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.538 kcal (2) G-P(sol) polarization free energy of solvation -35.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds