Wall clock time and date at job start Wed Apr 1 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 117.00126 * 2 1 4 4 O 1.20829 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99895 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46927 * 59.99837 * 5 3 2 7 7 C 1.52997 * 109.47212 * 299.99697 * 5 3 2 8 8 C 1.52995 * 109.47362 * 174.87560 * 7 5 3 9 9 C 1.52998 * 109.47153 * 294.10396 * 8 7 5 10 10 C 1.52995 * 109.47153 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47392 * 59.99649 * 10 9 8 12 12 C 1.52998 * 109.47258 * 300.00286 * 11 10 9 13 13 C 1.52995 * 109.47153 * 59.99567 * 12 11 10 14 14 N 1.46506 * 109.46956 * 179.97438 * 5 3 2 15 15 S 1.65593 * 120.00064 * 264.99888 * 14 5 3 16 16 O 1.42102 * 104.27713 * 181.07339 * 15 14 5 17 17 O 1.42100 * 104.27918 * 308.93040 * 15 14 5 18 18 C 1.81401 * 104.44833 * 65.00237 * 15 14 5 19 19 C 1.53007 * 109.47002 * 179.97438 * 18 15 14 20 20 C 1.50700 * 109.47036 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00104 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99804 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00216 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46569 * 90.00739 * 24 22 20 26 26 H 1.48502 * 109.47203 * 210.00149 * 24 22 20 27 27 H 1.48497 * 109.47199 * 330.00526 * 24 22 20 28 28 H 1.08993 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46631 * 300.00434 * 1 2 3 30 30 H 1.08993 * 109.47200 * 59.99705 * 1 2 3 31 31 H 1.09005 * 109.47138 * 54.87202 * 7 5 3 32 32 H 1.09004 * 109.47047 * 294.88064 * 7 5 3 33 33 H 1.09003 * 109.46876 * 54.10261 * 8 7 5 34 34 H 1.09000 * 109.47317 * 59.99319 * 9 8 7 35 35 H 1.09005 * 109.46602 * 299.99721 * 9 8 7 36 36 H 1.09002 * 109.47332 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.47177 * 299.99306 * 10 9 8 38 38 H 1.09005 * 109.47188 * 59.99773 * 11 10 9 39 39 H 1.09007 * 109.47381 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47317 * 180.02562 * 12 11 10 41 41 H 1.09003 * 109.47120 * 299.99851 * 12 11 10 42 42 H 1.08995 * 109.47177 * 60.00694 * 13 12 11 43 43 H 1.09002 * 109.47332 * 180.02562 * 13 12 11 44 44 H 0.97000 * 119.99686 * 84.99673 * 14 5 3 45 45 H 1.08996 * 109.47411 * 299.99739 * 18 15 14 46 46 H 1.09001 * 109.47497 * 59.99866 * 18 15 14 47 47 H 1.09006 * 109.46930 * 300.00097 * 19 18 15 48 48 H 1.09001 * 109.47068 * 59.99647 * 19 18 15 49 49 H 0.96997 * 120.00875 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8908 7 6 4.1139 0.5810 1.2483 8 6 5.6422 0.5483 1.1850 9 6 6.0856 -0.3431 0.0233 10 6 7.6139 -0.3753 -0.0404 11 6 8.1674 -0.9345 1.2717 12 6 7.7241 -0.0430 2.4334 13 6 6.1958 -0.0109 2.4971 14 7 3.9818 2.6797 -0.0011 15 16 4.3359 3.4379 -1.4300 16 8 4.7163 4.7517 -1.0447 17 8 5.2578 2.5664 -2.0702 18 6 2.7604 3.4691 -2.3284 19 6 2.9587 4.1541 -3.6822 20 6 1.6496 4.1806 -4.4283 21 1 0.7648 3.7513 -3.9819 22 6 1.5818 4.7518 -5.6813 23 7 0.4395 4.7745 -6.3327 24 14 3.1123 5.4936 -6.4538 25 1 3.8241 4.4534 -7.2390 26 1 2.7222 6.6106 -7.3511 27 1 4.0072 6.0063 -5.3854 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.7303 -0.4382 1.2954 32 1 3.7987 1.1292 2.1362 33 1 6.0212 1.5589 1.0326 34 1 5.6916 0.0555 -0.9116 35 1 5.7066 -1.3537 0.1757 36 1 7.9298 -1.0108 -0.8678 37 1 7.9925 0.6353 -0.1931 38 1 7.7888 -1.9452 1.4244 39 1 9.2563 -0.9570 1.2265 40 1 8.1188 -0.4412 3.3681 41 1 8.1027 0.9677 2.2808 42 1 5.8172 -1.0215 2.6498 43 1 5.8799 0.6246 3.3245 44 1 4.0494 3.1657 0.8356 45 1 2.4111 2.4485 -2.4850 46 1 2.0215 4.0208 -1.7473 47 1 3.3077 5.1748 -3.5252 48 1 3.6977 3.6028 -4.2636 49 1 0.3916 5.1767 -7.2141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494310181.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:02 Heat of formation + Delta-G solvation = -215.112200 kcal Electronic energy + Delta-G solvation = -30463.639220 eV Core-core repulsion = 26322.782581 eV Total energy + Delta-G solvation = -4140.856639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.73075 -39.75496 -38.28730 -37.81294 -37.15849 -36.64573 -35.93573 -33.52310 -33.04802 -31.52354 -30.09318 -28.12994 -27.93726 -25.50719 -23.44504 -23.25997 -22.24212 -21.70378 -20.66992 -20.42239 -19.53510 -18.89139 -18.46102 -18.24360 -17.38141 -17.12440 -16.96243 -16.42093 -16.16005 -16.07678 -15.48065 -15.31439 -15.00193 -14.85362 -14.82275 -14.59808 -14.37857 -13.87695 -13.75852 -13.48602 -13.32202 -13.22551 -13.11825 -13.09183 -13.01843 -12.93563 -12.82838 -12.62677 -12.29818 -12.22831 -12.13684 -11.95196 -11.87672 -11.80579 -11.74438 -11.67950 -11.36766 -11.21570 -10.91550 -10.86946 -10.74518 -10.59996 -8.39033 -6.45733 -0.83646 1.04266 1.30664 1.32201 1.34810 1.43191 1.85253 2.27799 2.62708 2.94313 3.09283 3.37944 3.65268 3.80768 3.82841 3.87852 3.94245 4.03064 4.05177 4.24090 4.31932 4.34376 4.41032 4.49573 4.50683 4.58926 4.69785 4.73136 4.74575 4.77043 4.90505 4.95521 5.00585 5.05008 5.05950 5.13905 5.28635 5.31453 5.37677 5.41116 5.42507 5.43705 5.51506 5.59036 5.72029 5.89409 6.14097 6.59556 6.62414 7.18399 8.77029 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003588 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.715257 B = 7802.764249 C = 9208.532597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.435 3.565 4 O -0.519 6.519 5 C 0.155 3.845 6 H 0.138 0.862 7 C -0.103 4.103 8 C -0.088 4.088 9 C -0.126 4.126 10 C -0.124 4.124 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.108 4.108 14 N -1.083 6.083 15 S 2.622 3.378 16 O -0.984 6.984 17 O -0.967 6.967 18 C -0.587 4.587 19 C -0.014 4.014 20 C -0.530 4.530 21 H 0.040 0.960 22 C 0.013 3.987 23 N -0.941 5.941 24 Si 0.929 3.071 25 H -0.256 1.256 26 H -0.272 1.272 27 H -0.249 1.249 28 H 0.136 0.864 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.433 0.567 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.033 0.967 48 H 0.037 0.963 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.929 -15.856 21.189 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.276 3.724 4 O -0.407 6.407 5 C 0.045 3.955 6 H 0.155 0.845 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.164 4.164 10 C -0.161 4.161 11 C -0.154 4.154 12 C -0.159 4.159 13 C -0.146 4.146 14 N -0.843 5.843 15 S 2.716 3.284 16 O -0.974 6.974 17 O -0.957 6.957 18 C -0.718 4.718 19 C -0.053 4.053 20 C -0.568 4.568 21 H 0.059 0.941 22 C -0.186 4.186 23 N -0.580 5.580 24 Si 0.751 3.249 25 H -0.180 1.180 26 H -0.197 1.197 27 H -0.172 1.172 28 H 0.154 0.846 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.270 0.730 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.463 -15.284 20.636 28.122 hybrid contribution -1.059 0.892 -0.674 1.540 sum 10.404 -14.392 19.962 26.718 Atomic orbital electron populations 1.23564 0.74994 1.05840 1.02292 1.86473 1.24634 1.32128 1.83482 1.24904 0.93289 0.81903 0.72334 1.90729 1.67513 1.37253 1.45235 1.20739 0.85375 0.82900 1.06439 0.84507 1.21910 0.96043 1.02343 0.93842 1.21181 0.93352 0.99972 0.96201 1.21742 0.95893 1.00606 0.98134 1.21530 0.95908 1.00625 0.98068 1.21531 1.00142 0.99543 0.94181 1.21551 0.96115 0.99737 0.98534 1.21541 0.95125 1.01977 0.95913 1.55292 1.84189 1.19583 1.25261 1.04577 0.76607 0.73124 0.74045 1.93536 1.82377 1.39897 1.81572 1.93551 1.59380 1.66665 1.76110 1.30333 1.21877 1.09934 1.09657 1.19370 0.98092 0.96371 0.91438 1.21123 0.94862 1.39005 1.01859 0.94133 1.25923 0.99496 0.95728 0.97406 1.70014 1.27361 1.46175 1.14490 0.85969 0.79928 0.79461 0.79564 1.18024 1.19738 1.17218 0.84574 0.91386 0.93305 0.86974 0.88884 0.91690 0.92643 0.90162 0.92139 0.93546 0.91157 0.92188 0.91021 0.92980 0.90567 0.91102 0.72975 0.85988 0.85265 0.94893 0.94456 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.35 -7.30 10.37 -51.39 -0.53 -7.84 16 3 C 0.43 10.56 6.72 71.24 0.48 11.04 16 4 O -0.52 -16.12 14.70 21.95 0.32 -15.80 16 5 C 0.16 3.17 2.59 44.24 0.11 3.28 16 6 H 0.14 2.78 5.71 -2.39 -0.01 2.76 16 7 C -0.10 -1.35 4.24 30.59 0.13 -1.22 16 8 C -0.09 -1.29 2.13 -10.80 -0.02 -1.31 16 9 C -0.13 -2.11 4.98 30.59 0.15 -1.96 16 10 C -0.12 -2.14 5.92 30.59 0.18 -1.96 16 11 C -0.12 -1.54 5.92 30.59 0.18 -1.35 16 12 C -0.12 -1.49 5.92 30.59 0.18 -1.30 16 13 C -0.11 -1.18 5.20 30.59 0.16 -1.02 16 14 N -1.08 -25.69 4.21 -172.51 -0.73 -26.42 16 15 S 2.62 87.92 5.44 -56.49 -0.31 87.62 16 16 O -0.98 -38.20 18.08 -127.65 -2.31 -40.51 16 17 O -0.97 -34.53 17.39 -127.65 -2.22 -36.75 16 18 C -0.59 -23.47 4.72 71.98 0.34 -23.13 16 19 C -0.01 -0.67 4.05 29.85 0.12 -0.55 16 20 C -0.53 -31.30 9.66 25.60 0.25 -31.06 16 21 H 0.04 2.61 7.99 -2.91 -0.02 2.58 16 22 C 0.01 0.77 5.47 84.65 0.46 1.23 16 23 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 24 Si 0.93 44.51 27.47 68.60 1.88 46.39 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 28 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.11 1.10 7.99 -2.38 -0.02 1.08 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 34 H 0.05 1.14 6.49 -2.39 -0.02 1.13 16 35 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.43 8.22 8.80 -96.75 -0.85 7.37 16 45 H 0.12 4.60 7.70 -2.39 -0.02 4.58 16 46 H 0.13 5.24 7.80 -2.39 -0.02 5.22 16 47 H 0.03 1.60 7.20 -2.38 -0.02 1.58 16 48 H 0.04 1.74 7.57 -2.39 -0.02 1.72 16 49 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -77.66 399.47 0.36 -77.30 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.03 Total: 22.53 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 3.92 Total: -47.65 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -0.43 Total: -85.29 kcal Atomic # 8 Polarization: -96.17 SS G_CDS: -4.74 Total: -100.90 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 87.92 SS G_CDS: -0.31 Total: 87.62 kcal Total: -77.66 0.36 -77.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494310181.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.813 kcal (2) G-P(sol) polarization free energy of solvation -77.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds