Wall clock time and date at job start Wed Apr 1 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34630 * 116.99719 * 2 1 4 4 O 1.21509 * 120.00397 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00001 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00309 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47158 * 180.02562 * 6 5 3 8 8 C 1.38278 * 119.93091 * 90.00112 * 7 6 5 9 9 C 1.38118 * 120.06851 * 180.02562 * 8 7 6 10 10 C 1.38864 * 119.92898 * 359.97438 * 9 8 7 11 11 N 1.39942 * 120.06727 * 179.97438 * 10 9 8 12 12 C 1.34778 * 119.99881 * 221.14244 * 11 10 9 13 13 O 1.21583 * 120.00086 * 10.18543 * 12 11 10 14 14 N 1.34779 * 120.00291 * 190.18241 * 12 11 10 15 15 C 1.46496 * 120.00263 * 185.75215 * 14 12 11 16 16 C 1.53004 * 109.47257 * 184.28858 * 15 14 12 17 17 C 1.50703 * 115.55138 * 298.61065 * 16 15 14 18 18 H 1.07997 * 120.00011 * 118.45832 * 17 16 15 19 19 C 1.37877 * 119.99501 * 298.18583 * 17 16 15 20 20 N 1.31516 * 119.99611 * 172.03934 * 19 17 16 21 21 Si 1.86799 * 120.00259 * 352.03592 * 19 17 16 22 22 H 1.48499 * 109.47182 * 93.09733 * 21 19 17 23 23 H 1.48497 * 109.47187 * 213.09637 * 21 19 17 24 24 H 1.48505 * 109.46909 * 333.09859 * 21 19 17 25 25 C 1.53000 * 117.49477 * 84.27412 * 16 15 14 26 26 C 1.52998 * 117.50010 * 152.93424 * 16 15 14 27 27 C 1.38865 * 119.86453 * 0.25618 * 10 9 8 28 28 C 1.38117 * 119.92410 * 359.49686 * 27 10 9 29 29 H 1.09006 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47136 * 299.99791 * 1 2 3 31 31 H 1.08997 * 109.47192 * 60.00031 * 1 2 3 32 32 H 0.97006 * 120.00143 * 359.97438 * 5 3 2 33 33 H 1.08993 * 109.47489 * 59.99971 * 6 5 3 34 34 H 1.08999 * 109.46662 * 299.99593 * 6 5 3 35 35 H 1.07995 * 119.96638 * 359.97438 * 8 7 6 36 36 H 1.08002 * 120.03081 * 179.97438 * 9 8 7 37 37 H 0.97004 * 120.00036 * 41.14243 * 11 10 9 38 38 H 0.97003 * 119.99811 * 5.75028 * 14 12 11 39 39 H 1.08999 * 109.47019 * 64.29362 * 15 14 12 40 40 H 1.08993 * 109.47068 * 304.28626 * 15 14 12 41 41 H 0.97003 * 119.99667 * 179.97438 * 20 19 17 42 42 H 1.09003 * 117.49564 * 214.99859 * 25 16 15 43 43 H 1.08996 * 117.50515 * 0.03022 * 25 16 15 44 44 H 1.08994 * 117.49756 * 359.97438 * 26 16 15 45 45 H 1.08996 * 117.49542 * 144.97278 * 26 16 15 46 46 H 1.07998 * 120.04089 * 179.72338 * 27 10 9 47 47 H 1.07997 * 119.96336 * 180.25269 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5755 0.0000 7 6 5.5682 2.3781 -0.0013 8 6 6.2512 2.2887 -1.2003 9 6 7.6204 2.1072 -1.2049 10 6 8.3111 2.0150 -0.0038 11 7 9.6983 1.8306 -0.0051 12 6 10.2659 0.9802 0.8731 13 8 9.5690 0.2378 1.5376 14 7 11.6059 0.9525 1.0147 15 6 12.2311 -0.0559 1.8739 16 6 13.7383 0.1978 1.9446 17 6 14.4741 0.1126 0.6321 18 1 14.9911 0.9784 0.2456 19 6 14.4918 -1.0725 -0.0725 20 7 14.9966 -1.1082 -1.2864 21 14 13.7988 -2.6271 0.6970 22 1 12.3744 -2.7804 0.3064 23 1 14.5718 -3.8022 0.2208 24 1 13.8994 -2.5347 2.1758 25 6 14.2352 1.2211 2.9678 26 6 14.4759 -0.2727 3.1997 27 6 7.6217 2.1003 1.1986 28 6 6.2532 2.2870 1.1964 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9375 0.4567 -0.0005 33 1 3.7817 3.1320 0.8904 34 1 3.7809 3.1330 -0.8895 35 1 5.7134 2.3601 -2.1341 36 1 8.1532 2.0371 -2.1418 37 1 10.2514 2.3148 -0.6380 38 1 12.1564 1.6004 0.5476 39 1 12.0487 -1.0482 1.4615 40 1 11.8051 0.0054 2.8753 41 1 15.0095 -1.9420 -1.7819 42 1 15.0943 1.8325 2.6916 43 1 13.4885 1.7132 3.5909 44 1 13.8873 -0.7626 3.9753 45 1 15.4930 -0.6444 3.0761 46 1 8.1554 2.0245 2.1344 47 1 5.7170 2.3575 2.1312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496713761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:00 Heat of formation + Delta-G solvation = -53.301312 kcal Electronic energy + Delta-G solvation = -29119.384944 eV Core-core repulsion = 24882.393751 eV Total energy + Delta-G solvation = -4236.991193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77165 -40.41714 -38.98920 -37.31520 -36.93011 -35.52824 -34.22967 -33.53820 -32.27049 -31.10777 -30.60558 -28.04834 -26.96080 -25.77330 -24.88381 -23.09350 -22.03028 -21.67503 -21.44407 -20.43357 -19.40200 -19.17042 -18.12893 -17.69320 -17.23393 -16.86673 -16.44241 -15.84160 -15.73085 -15.24770 -14.92430 -14.84086 -14.59109 -14.27462 -14.18470 -13.99306 -13.68820 -13.52811 -13.37763 -13.02406 -12.87611 -12.70453 -12.41293 -12.39486 -12.20935 -11.76236 -11.34481 -11.12903 -11.09297 -10.97266 -10.78250 -10.64916 -10.34486 -10.21398 -10.00007 -9.59006 -9.54717 -9.25572 -9.06506 -8.92076 -8.56772 -8.48784 -8.08424 -6.26092 -4.28240 0.96098 1.28053 2.02731 2.52187 2.85040 3.23237 3.30972 3.34512 3.39280 3.72169 4.08268 4.31649 4.38127 4.44458 4.65084 4.80520 4.83471 4.87646 4.88883 5.04800 5.12791 5.13162 5.22989 5.31595 5.50918 5.54719 5.60171 5.86862 5.87136 5.89022 6.03150 6.05929 6.08565 6.15775 6.23594 6.37907 6.38729 6.42211 6.49469 6.64131 6.83261 6.93007 6.99993 7.05661 7.08732 7.21147 7.59273 8.01205 8.29586 8.33975 8.75661 8.83543 9.37930 10.84605 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.001892 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.826513 B =14798.838822 C =15112.098432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.645 3.355 4 O -0.576 6.576 5 N -0.704 5.704 6 C 0.186 3.814 7 C -0.143 4.143 8 C -0.076 4.076 9 C -0.150 4.150 10 C 0.196 3.804 11 N -0.696 5.696 12 C 0.699 3.301 13 O -0.586 6.586 14 N -0.710 5.710 15 C 0.171 3.829 16 C -0.019 4.019 17 C -0.491 4.491 18 H 0.078 0.922 19 C 0.084 3.916 20 N -0.890 5.890 21 Si 0.867 3.133 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.250 1.250 25 C -0.180 4.180 26 C -0.185 4.185 27 C -0.121 4.121 28 C -0.076 4.076 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.409 0.591 38 H 0.406 0.594 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.266 0.734 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.131 0.869 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.257 6.791 1.304 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.398 3.602 4 O -0.465 6.465 5 N -0.364 5.364 6 C 0.064 3.936 7 C -0.144 4.144 8 C -0.095 4.095 9 C -0.171 4.171 10 C 0.100 3.900 11 N -0.345 5.345 12 C 0.399 3.601 13 O -0.464 6.464 14 N -0.363 5.363 15 C 0.047 3.953 16 C -0.020 4.020 17 C -0.528 4.528 18 H 0.096 0.904 19 C -0.120 4.120 20 N -0.526 5.526 21 Si 0.694 3.306 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.173 1.173 25 C -0.217 4.217 26 C -0.224 4.224 27 C -0.142 4.142 28 C -0.095 4.095 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.246 0.754 38 H 0.242 0.758 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.149 0.851 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.118 6.438 1.788 23.105 hybrid contribution 0.482 -0.846 -0.312 1.023 sum -21.636 5.592 1.476 22.395 Atomic orbital electron populations 1.23197 0.74345 1.03508 1.02717 1.86262 1.24258 1.31122 1.87040 1.18184 0.83480 0.82177 0.76385 1.91001 1.64703 1.34897 1.55911 1.44875 1.02809 1.10872 1.77822 1.20120 0.87346 0.82758 1.03371 1.19626 0.94090 1.06935 0.93756 1.20817 0.93422 0.97859 0.97402 1.20986 0.94296 1.04881 0.96961 1.17579 0.82582 0.96151 0.93710 1.42777 1.05527 1.47250 1.38976 1.16001 0.82985 0.80524 0.80553 1.90914 1.62122 1.43928 1.49450 1.45049 1.03862 1.36469 1.50891 1.20978 0.92443 0.90005 0.91887 1.19616 0.90189 1.00588 0.91653 1.20214 1.32801 0.98654 1.01142 0.90393 1.24917 0.94135 0.98860 0.94085 1.69897 1.45184 1.27380 1.10131 0.87035 0.78880 0.82952 0.81715 1.20394 1.21829 1.17340 1.22802 1.02789 0.92009 1.04082 1.23045 1.01903 0.96344 1.01093 1.21090 0.94408 1.00927 0.97738 1.20905 0.93605 0.97549 0.97434 0.87956 0.91841 0.91841 0.75426 0.90325 0.90321 0.85553 0.85299 0.75444 0.75828 0.92706 0.93027 0.92402 0.89621 0.90844 0.91065 0.89227 0.85125 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.63 10.62 -40.30 -0.43 -4.05 16 3 C 0.65 7.12 8.75 54.05 0.47 7.59 16 4 O -0.58 -7.88 16.13 -19.28 -0.31 -8.19 16 5 N -0.70 -6.40 5.55 -66.47 -0.37 -6.77 16 6 C 0.19 1.57 5.80 -5.19 -0.03 1.54 16 7 C -0.14 -1.30 5.25 -104.59 -0.55 -1.85 16 8 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16 9 C -0.15 -1.59 9.97 -39.39 -0.39 -1.98 16 10 C 0.20 2.52 6.09 -83.69 -0.51 2.01 16 11 N -0.70 -9.55 5.33 -14.23 -0.08 -9.63 16 12 C 0.70 12.45 8.16 -86.92 -0.71 11.74 16 13 O -0.59 -12.32 14.80 5.29 0.08 -12.24 16 14 N -0.71 -12.95 5.45 -65.23 -0.36 -13.31 16 15 C 0.17 3.51 5.15 -4.04 -0.02 3.49 16 16 C -0.02 -0.41 0.90 -155.66 -0.14 -0.55 16 17 C -0.49 -12.33 8.99 -34.44 -0.31 -12.64 16 18 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 19 C 0.08 2.24 5.46 -17.82 -0.10 2.14 16 20 N -0.89 -25.36 13.96 55.43 0.77 -24.58 16 21 Si 0.87 20.76 24.91 -169.99 -4.23 16.53 16 22 H -0.28 -6.82 6.95 56.52 0.39 -6.43 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.25 -5.64 5.90 56.52 0.33 -5.30 16 25 C -0.18 -3.30 9.95 -26.69 -0.27 -3.56 16 26 C -0.19 -3.64 8.31 -26.69 -0.22 -3.86 16 27 C -0.12 -1.55 8.68 -39.39 -0.34 -1.89 16 28 C -0.08 -0.78 9.69 -39.61 -0.38 -1.16 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.41 3.34 8.57 -40.82 -0.35 2.99 16 33 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.41 4.49 8.88 -40.82 -0.36 4.13 16 38 H 0.41 6.87 8.26 -40.82 -0.34 6.53 16 39 H 0.05 1.26 4.73 -51.93 -0.25 1.01 16 40 H 0.05 1.02 8.07 -51.93 -0.42 0.60 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 46 H 0.13 1.86 7.13 -52.49 -0.37 1.49 16 47 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -32.93 397.43 -8.54 -41.46 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.79 Total: 13.41 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.82 Total: 1.39 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.03 Total: -54.29 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.66 Total: -24.49 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.23 Total: 16.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.93 -8.54 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496713761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.838 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds