Wall clock time and date at job start Wed Apr 1 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34645 * 116.99624 * 2 1 4 4 O 1.21510 * 120.00091 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99888 * 179.97438 * 3 2 1 6 6 C 1.46922 * 120.62768 * 179.97438 * 5 3 2 7 7 C 1.53193 * 108.89233 * 126.29894 * 6 5 3 8 8 C 1.53354 * 109.14962 * 54.57539 * 7 6 5 9 9 N 1.46507 * 109.41786 * 178.67752 * 8 7 6 10 10 C 1.34774 * 119.99742 * 275.12828 * 9 8 7 11 11 O 1.21584 * 120.00009 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.39953 * 120.00356 * 174.84673 * 12 10 9 14 14 C 1.39288 * 119.94970 * 145.76049 * 13 12 10 15 15 C 1.38485 * 120.43054 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.32234 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.87908 * 359.97438 * 16 15 14 18 18 C 1.41417 * 120.20975 * 179.97438 * 17 16 15 19 19 H 1.07990 * 120.00061 * 205.17423 * 18 17 16 20 20 C 1.39934 * 119.99605 * 25.17275 * 18 17 16 21 21 N 1.30824 * 120.00333 * 16.79720 * 20 18 17 22 22 Si 1.86801 * 119.99607 * 196.80044 * 20 18 17 23 23 H 1.48497 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47302 * 119.99919 * 22 20 18 25 25 H 1.48501 * 109.46873 * 239.99645 * 22 20 18 26 26 C 1.38235 * 119.94378 * 325.49422 * 13 12 10 27 27 C 1.53036 * 109.60636 * 298.71279 * 8 7 6 28 28 C 1.46929 * 120.62762 * 359.97247 * 5 3 2 29 29 H 1.09000 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47722 * 300.00318 * 1 2 3 31 31 H 1.09007 * 109.46948 * 60.00955 * 1 2 3 32 32 H 1.09002 * 109.58735 * 246.15093 * 6 5 3 33 33 H 1.09000 * 109.58949 * 6.43914 * 6 5 3 34 34 H 1.08999 * 109.50271 * 174.65786 * 7 6 5 35 35 H 1.09010 * 109.49754 * 294.75099 * 7 6 5 36 36 H 1.08997 * 109.42318 * 58.75212 * 8 7 6 37 37 H 0.96998 * 119.99606 * 95.12518 * 9 8 7 38 38 H 0.97005 * 119.99918 * 354.84122 * 12 10 9 39 39 H 1.07997 * 119.78557 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.84288 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.05944 * 179.97438 * 16 15 14 42 42 H 0.96992 * 120.00346 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.15877 * 359.97438 * 26 13 12 44 44 H 1.09007 * 109.50182 * 301.42627 * 27 8 7 45 45 H 1.08996 * 109.52319 * 181.34201 * 27 8 7 46 46 H 1.08990 * 109.58897 * 353.41894 * 28 5 3 47 47 H 1.09004 * 109.57992 * 113.70706 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0904 2.5721 0.0000 7 6 5.0801 2.6144 1.1685 8 6 6.0225 1.4084 1.0735 9 7 6.9920 1.4602 2.1707 10 6 8.1176 2.1901 2.0415 11 8 8.3286 2.8052 1.0142 12 7 9.0097 2.2374 3.0506 13 6 10.2270 2.9058 2.8778 14 6 10.8096 3.5780 3.9496 15 6 12.0137 4.2430 3.7896 16 6 12.6489 4.2465 2.5680 17 6 12.0727 3.5707 1.4762 18 6 12.7188 3.5703 0.2183 19 1 12.1429 3.4307 -0.6845 20 6 14.1045 3.7506 0.1435 21 7 14.8434 3.5923 1.2114 22 14 14.8991 4.2175 -1.4814 23 1 13.8528 4.3343 -2.5286 24 1 15.5999 5.5184 -1.3339 25 1 15.8764 3.1704 -1.8733 26 6 10.8522 2.8932 1.6449 27 6 5.2116 0.1141 1.1704 28 6 4.2229 0.0470 0.0017 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.6281 2.7027 -0.9391 33 1 3.3557 3.3691 0.1143 34 1 5.6587 3.5370 1.1220 35 1 4.5329 2.5748 2.1104 36 1 6.5509 1.4353 0.1205 37 1 6.8237 0.9692 2.9902 38 1 8.8079 1.8082 3.8968 39 1 10.3191 3.5805 4.9118 40 1 12.4571 4.7608 4.6273 41 1 13.5876 4.7669 2.4479 42 1 15.8038 3.7176 1.1596 43 1 10.4036 2.3683 0.8144 44 1 4.6632 0.0980 2.1124 45 1 5.8850 -0.7418 1.1267 46 1 3.5759 -0.8222 0.1197 47 1 4.7694 -0.0291 -0.9384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496808989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:24 Heat of formation + Delta-G solvation = -82.681161 kcal Electronic energy + Delta-G solvation = -29814.478193 eV Core-core repulsion = 25576.212995 eV Total energy + Delta-G solvation = -4238.265199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.99353 -40.05736 -38.54986 -37.25484 -36.51955 -34.81830 -34.29179 -33.03753 -31.54164 -31.31255 -29.77996 -28.19357 -27.67982 -25.30263 -24.98246 -23.75471 -22.17043 -21.36122 -20.81074 -20.30436 -19.93705 -18.59986 -17.94278 -17.51015 -17.35365 -16.80912 -16.07963 -15.45860 -15.18268 -14.97730 -14.79991 -14.73841 -14.49030 -14.36527 -14.16169 -13.81931 -13.62747 -13.14836 -12.96681 -12.90539 -12.69126 -12.40907 -12.23837 -12.03986 -11.65019 -11.63230 -11.32699 -11.12167 -11.11102 -11.09168 -10.97770 -10.88737 -10.70382 -10.42571 -10.17087 -9.68575 -9.48912 -9.18373 -9.08240 -8.97975 -8.91611 -7.40762 -6.85982 -6.67276 -4.29840 1.81658 2.48690 2.74384 2.87573 3.03417 3.11946 3.18873 3.23579 3.53315 3.71639 3.99337 4.33390 4.49645 4.57902 4.66124 4.69336 4.78938 4.86045 4.89497 4.92956 5.06231 5.14319 5.24052 5.40618 5.48091 5.54558 5.60418 5.74545 5.77546 5.94921 6.01988 6.16511 6.27240 6.43216 6.56735 6.80800 6.82699 6.97243 7.08014 7.12640 7.27946 7.37971 7.72297 7.86078 7.94282 8.03455 8.14938 8.28378 8.45966 8.70487 8.93438 9.01053 9.07257 10.25146 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.001997 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.496725 B =14014.839431 C =14899.273304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.649 3.351 4 O -0.573 6.573 5 N -0.593 5.593 6 C 0.129 3.871 7 C -0.146 4.146 8 C 0.165 3.835 9 N -0.748 5.748 10 C 0.699 3.301 11 O -0.565 6.565 12 N -0.681 5.681 13 C 0.168 3.832 14 C -0.263 4.263 15 C -0.092 4.092 16 C -0.173 4.173 17 C 0.119 3.881 18 C -0.457 4.457 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.907 3.093 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.208 4.208 27 C -0.142 4.142 28 C 0.116 3.884 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.279 0.721 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 -9.753 0.995 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.462 6.462 5 N -0.334 5.334 6 C 0.008 3.992 7 C -0.186 4.186 8 C 0.059 3.941 9 N -0.404 5.404 10 C 0.399 3.601 11 O -0.440 6.440 12 N -0.328 5.328 13 C 0.076 3.924 14 C -0.285 4.285 15 C -0.111 4.111 16 C -0.193 4.193 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.422 5.422 22 Si 0.731 3.269 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.230 4.230 27 C -0.181 4.181 28 C -0.007 4.007 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.223 -8.925 0.078 23.023 hybrid contribution 0.150 -0.278 0.331 0.458 sum -21.072 -9.203 0.409 22.998 Atomic orbital electron populations 1.23194 0.74456 1.03436 1.02757 1.86226 1.24126 1.31096 1.87129 1.18039 0.83175 0.82121 0.76326 1.90997 1.64199 1.34949 1.56103 1.47005 1.01837 1.08810 1.75754 1.21690 0.95109 0.83271 0.99161 1.22458 0.97175 1.00460 0.98483 1.20769 0.88225 0.93545 0.91530 1.45187 1.21500 1.54045 1.19654 1.15974 0.79585 0.80239 0.84284 1.90978 1.77057 1.47458 1.28485 1.42597 1.17405 1.57662 1.15093 1.17222 0.83603 0.95840 0.95712 1.20006 1.00856 1.10642 0.96988 1.20444 0.94682 0.99110 0.96875 1.21335 1.01665 1.03589 0.92700 1.17504 0.89933 0.87737 0.93205 1.19605 0.91908 1.43371 0.93809 0.90359 1.25898 0.97692 0.92488 0.98104 1.69832 1.06830 1.35382 1.30153 0.86283 0.79359 0.78836 0.82379 1.18366 1.19749 1.20087 1.20984 0.98878 1.07439 0.95714 1.22227 0.98168 0.98255 0.99445 1.21714 0.93493 0.86661 0.98826 0.87972 0.91884 0.91849 0.90273 0.88320 0.89147 0.91377 0.88844 0.77480 0.77331 0.89428 0.89109 0.86371 0.91056 0.87548 0.90860 0.89459 0.88527 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.40 9.20 -40.34 -0.37 -3.77 16 3 C 0.65 7.32 8.43 54.06 0.46 7.77 16 4 O -0.57 -8.16 15.54 -19.28 -0.30 -8.46 16 5 N -0.59 -5.68 2.97 -178.54 -0.53 -6.21 16 6 C 0.13 1.28 6.42 -3.71 -0.02 1.26 16 7 C -0.15 -1.52 5.68 -26.45 -0.15 -1.67 16 8 C 0.17 1.71 2.42 -67.72 -0.16 1.54 16 9 N -0.75 -8.73 5.08 -58.48 -0.30 -9.02 16 10 C 0.70 12.09 8.25 -86.92 -0.72 11.38 16 11 O -0.56 -12.40 13.76 5.29 0.07 -12.33 16 12 N -0.68 -11.92 5.34 -14.27 -0.08 -12.00 16 13 C 0.17 3.81 6.25 -83.76 -0.52 3.29 16 14 C -0.26 -5.81 9.97 -39.10 -0.39 -6.20 16 15 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 16 C -0.17 -4.57 8.69 -38.84 -0.34 -4.91 16 17 C 0.12 3.30 5.57 -106.84 -0.59 2.70 16 18 C -0.46 -12.61 9.05 -37.74 -0.34 -12.96 16 19 H 0.08 2.14 7.90 -52.49 -0.41 1.72 16 20 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 21 N -0.80 -20.84 10.94 55.55 0.61 -20.23 16 22 Si 0.91 19.19 29.59 -169.99 -5.03 14.16 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 C -0.21 -5.41 8.39 -38.69 -0.32 -5.74 16 27 C -0.14 -1.01 5.55 -26.59 -0.15 -1.15 16 28 C 0.12 0.83 6.45 -3.69 -0.02 0.80 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 37 H 0.39 3.35 8.62 -40.82 -0.35 2.99 16 38 H 0.39 5.27 8.84 -40.82 -0.36 4.91 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 42 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 43 H 0.11 2.85 6.48 -52.49 -0.34 2.51 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.60 6.93 -51.93 -0.36 0.24 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -34.23 387.80 -9.48 -43.71 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.69 Total: 11.49 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.70 Total: -3.18 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.30 Total: -47.46 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.60 Total: -24.56 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.23 -9.48 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496808989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.975 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds