Wall clock time and date at job start Wed Apr 1 2020 04:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34645 * 116.99624 * 2 1 4 4 O 1.21510 * 120.00091 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99888 * 179.97438 * 3 2 1 6 6 C 1.46922 * 120.62768 * 179.97438 * 5 3 2 7 7 C 1.53193 * 108.89233 * 126.29894 * 6 5 3 8 8 C 1.53354 * 109.14962 * 54.57539 * 7 6 5 9 9 N 1.46507 * 109.41786 * 178.67752 * 8 7 6 10 10 C 1.34774 * 119.99742 * 275.12828 * 9 8 7 11 11 O 1.21584 * 120.00009 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99872 * 180.02562 * 10 9 8 13 13 C 1.39953 * 120.00356 * 174.84673 * 12 10 9 14 14 C 1.39288 * 119.94970 * 145.76049 * 13 12 10 15 15 C 1.38485 * 120.43054 * 180.02562 * 14 13 12 16 16 C 1.37690 * 120.32234 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.87908 * 359.97438 * 16 15 14 18 18 C 1.41417 * 120.20975 * 179.97438 * 17 16 15 19 19 H 1.07990 * 120.00061 * 205.17423 * 18 17 16 20 20 C 1.39934 * 119.99605 * 25.17275 * 18 17 16 21 21 N 1.30824 * 120.00333 * 16.79720 * 20 18 17 22 22 Si 1.86801 * 119.99607 * 196.80044 * 20 18 17 23 23 H 1.48497 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47302 * 119.99919 * 22 20 18 25 25 H 1.48501 * 109.46873 * 239.99645 * 22 20 18 26 26 C 1.38235 * 119.94378 * 325.49422 * 13 12 10 27 27 C 1.53036 * 109.60636 * 298.71279 * 8 7 6 28 28 C 1.46929 * 120.62762 * 359.97247 * 5 3 2 29 29 H 1.09000 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47722 * 300.00318 * 1 2 3 31 31 H 1.09007 * 109.46948 * 60.00955 * 1 2 3 32 32 H 1.09002 * 109.58735 * 246.15093 * 6 5 3 33 33 H 1.09000 * 109.58949 * 6.43914 * 6 5 3 34 34 H 1.08999 * 109.50271 * 174.65786 * 7 6 5 35 35 H 1.09010 * 109.49754 * 294.75099 * 7 6 5 36 36 H 1.08997 * 109.42318 * 58.75212 * 8 7 6 37 37 H 0.96998 * 119.99606 * 95.12518 * 9 8 7 38 38 H 0.97005 * 119.99918 * 354.84122 * 12 10 9 39 39 H 1.07997 * 119.78557 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.84288 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.05944 * 179.97438 * 16 15 14 42 42 H 0.96992 * 120.00346 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.15877 * 359.97438 * 26 13 12 44 44 H 1.09007 * 109.50182 * 301.42627 * 27 8 7 45 45 H 1.08996 * 109.52319 * 181.34201 * 27 8 7 46 46 H 1.08990 * 109.58897 * 353.41894 * 28 5 3 47 47 H 1.09004 * 109.57992 * 113.70706 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0904 2.5721 0.0000 7 6 5.0801 2.6144 1.1685 8 6 6.0225 1.4084 1.0735 9 7 6.9920 1.4602 2.1707 10 6 8.1176 2.1901 2.0415 11 8 8.3286 2.8052 1.0142 12 7 9.0097 2.2374 3.0506 13 6 10.2270 2.9058 2.8778 14 6 10.8096 3.5780 3.9496 15 6 12.0137 4.2430 3.7896 16 6 12.6489 4.2465 2.5680 17 6 12.0727 3.5707 1.4762 18 6 12.7188 3.5703 0.2183 19 1 12.1429 3.4307 -0.6845 20 6 14.1045 3.7506 0.1435 21 7 14.8434 3.5923 1.2114 22 14 14.8991 4.2175 -1.4814 23 1 13.8528 4.3343 -2.5286 24 1 15.5999 5.5184 -1.3339 25 1 15.8764 3.1704 -1.8733 26 6 10.8522 2.8932 1.6449 27 6 5.2116 0.1141 1.1704 28 6 4.2229 0.0470 0.0017 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.6281 2.7027 -0.9391 33 1 3.3557 3.3691 0.1143 34 1 5.6587 3.5370 1.1220 35 1 4.5329 2.5748 2.1104 36 1 6.5509 1.4353 0.1205 37 1 6.8237 0.9692 2.9902 38 1 8.8079 1.8082 3.8968 39 1 10.3191 3.5805 4.9118 40 1 12.4571 4.7608 4.6273 41 1 13.5876 4.7669 2.4479 42 1 15.8038 3.7176 1.1596 43 1 10.4036 2.3683 0.8144 44 1 4.6632 0.0980 2.1124 45 1 5.8850 -0.7418 1.1267 46 1 3.5759 -0.8222 0.1197 47 1 4.7694 -0.0291 -0.9384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496808989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:22 Heat of formation + Delta-G solvation = -106.014857 kcal Electronic energy + Delta-G solvation = -29815.490018 eV Core-core repulsion = 25576.212995 eV Total energy + Delta-G solvation = -4239.277024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.85209 -41.37430 -39.63176 -38.79871 -37.40136 -36.22562 -35.72073 -34.80609 -32.47306 -32.17432 -31.71771 -29.67449 -28.48818 -27.22914 -25.92380 -24.51050 -23.48361 -22.74826 -22.39735 -21.58449 -21.01874 -19.58464 -19.51527 -18.88063 -18.16117 -17.62480 -17.49739 -17.15225 -16.47889 -16.25059 -16.16490 -15.90087 -15.56510 -15.46303 -15.19623 -14.83906 -14.71457 -14.57785 -14.48575 -13.98061 -13.86580 -13.49539 -13.42638 -13.01983 -13.00811 -12.94492 -12.88356 -12.77042 -12.35244 -12.16390 -12.05844 -11.93950 -11.88428 -11.80396 -11.56461 -11.49401 -11.21152 -10.96223 -10.75113 -10.09366 -9.92499 -9.36138 -8.69924 -8.55734 -6.34138 0.95173 1.06299 1.08928 1.37173 1.49072 1.52499 1.61041 1.74996 2.22028 2.23643 2.76933 2.87597 3.29549 3.62708 3.76968 3.79034 3.96456 4.06159 4.22872 4.32746 4.36346 4.37713 4.47830 4.50943 4.66739 4.67022 4.71327 4.73005 4.79008 4.91381 5.02126 5.07626 5.11612 5.15835 5.17108 5.23522 5.26529 5.35549 5.39055 5.53110 5.76480 5.86600 6.09219 6.14755 6.19265 6.23747 6.39839 6.72147 6.97288 7.04209 7.12953 7.15660 7.65567 8.35513 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.001997 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.496725 B =14014.839431 C =14899.273304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.369 6.369 3 C 0.646 3.354 4 O -0.610 6.610 5 N -0.591 5.591 6 C 0.134 3.866 7 C -0.136 4.136 8 C 0.162 3.838 9 N -0.721 5.721 10 C 0.695 3.305 11 O -0.615 6.615 12 N -0.671 5.671 13 C 0.177 3.823 14 C -0.252 4.252 15 C -0.091 4.091 16 C -0.200 4.200 17 C 0.088 3.912 18 C -0.501 4.501 19 H 0.062 0.938 20 C 0.037 3.963 21 N -0.823 5.823 22 Si 0.980 3.020 23 H -0.266 1.266 24 H -0.260 1.260 25 H -0.262 1.262 26 C -0.234 4.234 27 C -0.128 4.128 28 C 0.114 3.886 29 H 0.138 0.862 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.413 0.587 38 H 0.417 0.583 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.289 0.711 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.517 -11.402 2.443 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.282 6.282 3 C 0.401 3.599 4 O -0.502 6.502 5 N -0.331 5.331 6 C 0.011 3.989 7 C -0.176 4.176 8 C 0.057 3.943 9 N -0.378 5.378 10 C 0.396 3.604 11 O -0.494 6.494 12 N -0.319 5.319 13 C 0.083 3.917 14 C -0.274 4.274 15 C -0.110 4.110 16 C -0.220 4.220 17 C 0.085 3.915 18 C -0.531 4.531 19 H 0.080 0.920 20 C -0.177 4.177 21 N -0.449 5.449 22 Si 0.801 3.199 23 H -0.190 1.190 24 H -0.184 1.184 25 H -0.186 1.186 26 C -0.256 4.256 27 C -0.167 4.167 28 C -0.008 4.008 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.123 0.877 46 H 0.133 0.867 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.414 -10.655 1.593 24.869 hybrid contribution 0.333 0.168 -0.017 0.373 sum -22.081 -10.487 1.576 24.496 Atomic orbital electron populations 1.23498 0.72898 1.05665 1.02416 1.86235 1.25612 1.29631 1.86714 1.18221 0.83488 0.82268 0.75934 1.90971 1.65119 1.36309 1.57828 1.47066 1.01654 1.09315 1.75036 1.21554 0.94646 0.83611 0.99041 1.22310 0.96892 0.99294 0.99075 1.20910 0.87860 0.95514 0.90012 1.44955 1.19653 1.52294 1.20864 1.16194 0.80590 0.80277 0.83342 1.90962 1.78329 1.49630 1.30464 1.42347 1.15829 1.57360 1.16395 1.17264 0.84792 0.95045 0.94566 1.20435 1.00062 1.08498 0.98362 1.20817 0.94947 0.98661 0.96563 1.21288 1.01900 1.04866 0.93911 1.17849 0.91011 0.88691 0.93950 1.19741 0.93295 1.46469 0.93548 0.91993 1.26682 0.97406 0.91680 1.01967 1.69859 1.07542 1.35437 1.32043 0.85201 0.78185 0.79154 0.77390 1.18962 1.18426 1.18613 1.20935 0.99237 1.08582 0.96808 1.22158 0.97877 0.96512 1.00140 1.21914 0.93485 0.86096 0.99259 0.84417 0.92211 0.92308 0.90122 0.89434 0.91811 0.90521 0.91168 0.74997 0.74513 0.85142 0.86012 0.87914 0.90069 0.89697 0.89395 0.87685 0.86725 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -6.01 9.20 -55.54 -0.51 -6.52 16 3 C 0.65 13.90 8.43 129.79 1.09 15.00 16 4 O -0.61 -17.36 15.54 19.81 0.31 -17.05 16 5 N -0.59 -10.57 2.97 -949.17 -2.82 -13.39 16 6 C 0.13 2.65 6.42 86.36 0.55 3.20 16 7 C -0.14 -2.78 5.68 30.78 0.17 -2.61 16 8 C 0.16 3.16 2.42 45.12 0.11 3.27 16 9 N -0.72 -15.51 5.08 -457.18 -2.32 -17.84 16 10 C 0.70 23.70 8.25 179.06 1.48 25.18 16 11 O -0.62 -27.92 13.76 -3.98 -0.05 -27.97 16 12 N -0.67 -22.39 5.34 -317.33 -1.70 -24.08 16 13 C 0.18 7.92 6.25 38.10 0.24 8.16 16 14 C -0.25 -10.54 9.97 22.58 0.23 -10.31 16 15 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 16 C -0.20 -10.82 8.69 22.75 0.20 -10.62 16 17 C 0.09 5.09 5.57 -21.30 -0.12 4.97 16 18 C -0.50 -29.27 9.05 23.46 0.21 -29.05 16 19 H 0.06 3.65 7.90 -2.92 -0.02 3.63 16 20 C 0.04 1.98 5.16 85.25 0.44 2.42 16 21 N -0.82 -44.17 10.94 21.82 0.24 -43.94 16 22 Si 0.98 40.37 29.59 68.60 2.03 42.40 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 C -0.23 -12.62 8.39 22.85 0.19 -12.43 16 27 C -0.13 -1.43 5.55 30.68 0.17 -1.26 16 28 C 0.11 1.35 6.45 86.38 0.56 1.91 16 29 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.96 7.00 -2.39 -0.02 1.94 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 37 H 0.41 5.64 8.62 -92.71 -0.80 4.84 16 38 H 0.42 9.79 8.84 -92.70 -0.82 8.97 16 39 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.10 5.78 6.16 -2.91 -0.02 5.76 16 42 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 43 H 0.08 4.85 6.48 -2.91 -0.02 4.84 16 44 H 0.09 0.80 8.14 -2.38 -0.02 0.79 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.11 1.02 6.93 -2.39 -0.02 1.01 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -79.68 387.80 1.51 -78.17 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -0.60 Total: 34.65 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.94 Total: -4.42 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -6.60 Total: -99.25 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.26 Total: -51.55 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -79.68 1.51 -78.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496808989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.845 kcal (2) G-P(sol) polarization free energy of solvation -79.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds