Wall clock time and date at job start Wed Apr 1 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99858 * 2 1 4 4 C 1.53001 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47424 * 179.97438 * 4 3 2 6 6 N 1.46492 * 109.47412 * 180.02562 * 5 4 3 7 7 C 1.34263 * 125.75728 * 124.99990 * 6 5 4 8 8 C 1.38045 * 107.41908 * 179.97438 * 7 6 5 9 9 C 1.47422 * 126.41555 * 179.97438 * 8 7 6 10 10 O 1.21602 * 120.00018 * 325.31751 * 9 8 7 11 11 N 1.34785 * 119.99920 * 145.31470 * 9 8 7 12 12 C 1.46497 * 120.00034 * 4.10106 * 11 9 8 13 13 C 1.50703 * 109.47323 * 94.75131 * 12 11 9 14 14 H 1.08003 * 119.99711 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00068 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99727 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99747 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47443 * 59.99872 * 17 15 13 19 19 H 1.48504 * 109.46769 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47204 * 299.99388 * 17 15 13 21 21 C 1.46494 * 120.00007 * 184.09794 * 11 9 8 22 22 C 1.50700 * 109.47265 * 89.99972 * 21 11 9 23 23 C 1.34516 * 125.78495 * 89.71407 * 22 21 11 24 24 C 1.41384 * 106.83745 * 179.89113 * 23 22 21 25 25 C 1.34515 * 106.84206 * 0.37547 * 24 23 22 26 26 O 1.34299 * 125.79115 * 270.02539 * 22 21 11 27 27 C 1.41297 * 107.16796 * 359.97438 * 8 7 6 28 28 N 1.30449 * 108.02524 * 359.74006 * 27 8 7 29 29 H 1.08997 * 109.46873 * 60.00320 * 1 2 3 30 30 H 1.08999 * 109.46946 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46895 * 300.00432 * 1 2 3 32 32 H 1.08997 * 109.47392 * 60.00083 * 3 2 1 33 33 H 1.09004 * 109.46997 * 299.99498 * 3 2 1 34 34 H 1.08997 * 109.47812 * 300.00058 * 4 3 2 35 35 H 1.09008 * 109.47272 * 59.99820 * 4 3 2 36 36 H 1.09007 * 109.46605 * 300.00351 * 5 4 3 37 37 H 1.08995 * 109.47031 * 59.99536 * 5 4 3 38 38 H 1.08001 * 126.28984 * 0.02562 * 7 6 5 39 39 H 1.08997 * 109.47370 * 214.75537 * 12 11 9 40 40 H 1.09001 * 109.47343 * 334.75703 * 12 11 9 41 41 H 0.97002 * 119.99187 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.47141 * 210.00387 * 21 11 9 43 43 H 1.09005 * 109.47205 * 329.99869 * 21 11 9 44 44 H 1.07999 * 126.58259 * 0.03205 * 23 22 21 45 45 H 1.08004 * 126.58165 * 180.16341 * 24 23 22 46 46 H 1.07997 * 125.79010 * 179.75128 * 25 24 23 47 47 H 1.07998 * 125.98321 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.4496 3.0274 -0.8928 8 6 7.7362 2.6762 -0.5366 9 6 8.9749 3.0670 -1.2339 10 8 8.9809 3.1816 -2.4445 11 7 10.1008 3.2974 -0.5295 12 6 10.1181 3.0728 0.9180 13 6 10.6439 1.6900 1.2056 14 1 10.9364 1.0434 0.3914 15 6 10.7516 1.2505 2.5080 16 7 10.3959 2.0381 3.4993 17 14 11.4041 -0.4632 2.8643 18 1 12.7831 -0.5894 2.3279 19 1 11.4204 -0.6914 4.3316 20 1 10.5268 -1.4714 2.2168 21 6 11.3071 3.7724 -1.2115 22 6 11.3123 5.2793 -1.2320 23 6 11.8439 6.0770 -0.2883 24 6 11.6281 7.4093 -0.7092 25 6 10.9703 7.3462 -1.8808 26 8 10.7817 6.0535 -2.1926 27 6 7.6436 1.8720 0.6215 28 7 6.3823 1.7591 0.9347 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 3.8568 0.6439 0.8908 35 1 3.8575 0.6435 -0.8891 36 1 3.8364 3.1227 -0.8905 37 1 3.8358 3.1239 0.8894 38 1 6.1643 3.6410 -1.7344 39 1 10.7625 3.8126 1.3929 40 1 9.1062 3.1658 1.3123 41 1 10.4714 1.7286 4.4155 42 1 12.1893 3.4132 -0.6817 43 1 11.3188 3.3951 -2.2341 44 1 12.3421 5.7604 0.6161 45 1 11.9303 8.3059 -0.1882 46 1 10.6481 8.1917 -2.4706 47 1 8.4722 1.4316 1.1562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528321627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:11 Heat of formation + Delta-G solvation = 19.244128 kcal Electronic energy + Delta-G solvation = -30230.961046 eV Core-core repulsion = 25997.115660 eV Total energy + Delta-G solvation = -4233.845387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.14221 -40.85543 -38.59149 -38.21114 -35.18042 -34.71685 -32.87559 -32.48533 -31.16440 -30.45155 -29.38461 -27.45768 -27.21031 -25.79914 -24.91116 -23.08386 -22.23582 -21.59877 -21.30374 -20.25791 -20.08920 -18.61947 -17.18721 -17.09705 -16.56766 -16.41638 -16.27448 -15.89847 -15.64152 -15.39390 -14.98464 -14.73986 -14.50442 -14.35152 -14.13320 -13.70606 -13.45274 -12.88060 -12.57047 -12.54231 -12.44072 -12.39872 -12.24854 -12.17083 -12.09391 -12.01583 -11.38363 -11.29486 -11.23424 -11.10888 -10.93257 -10.64427 -10.37366 -10.16037 -9.97971 -9.83247 -9.54659 -9.14138 -8.98008 -8.59714 -8.14249 -8.08646 -7.77202 -6.21946 -4.31494 2.05365 2.08157 2.67807 2.94264 2.97577 3.25729 3.31288 3.34134 3.40080 3.49548 3.99324 4.14006 4.34974 4.52841 4.74686 4.83540 4.91797 5.02470 5.05595 5.08309 5.09503 5.11185 5.17805 5.23032 5.35146 5.35734 5.39141 5.54181 5.72284 5.85589 5.89689 6.00718 6.11478 6.14439 6.15174 6.31740 6.45160 6.47200 6.72882 6.84248 6.87398 7.23849 7.26242 7.32335 7.50967 7.57319 7.72906 8.01925 8.18295 8.32882 8.77442 9.04928 9.36473 10.82913 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008174 B = 0.003210 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.854628 B = 8721.514594 C =11377.880658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.133 4.133 5 C 0.141 3.859 6 N -0.376 5.376 7 C 0.102 3.898 8 C -0.275 4.275 9 C 0.596 3.404 10 O -0.571 6.571 11 N -0.588 5.588 12 C 0.229 3.771 13 C -0.547 4.547 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.197 3.803 22 C -0.013 4.013 23 C -0.203 4.203 24 C -0.216 4.216 25 C -0.055 4.055 26 O -0.168 6.168 27 C 0.102 3.898 28 N -0.310 5.310 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.176 0.824 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.268 0.732 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.143 0.857 46 H 0.195 0.805 47 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 5.496 -6.304 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.012 4.012 4 C -0.171 4.171 5 C 0.019 3.981 6 N -0.155 5.155 7 C -0.048 4.048 8 C -0.290 4.290 9 C 0.386 3.614 10 O -0.452 6.452 11 N -0.317 5.317 12 C 0.110 3.890 13 C -0.585 4.585 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.073 3.927 22 C -0.065 4.065 23 C -0.223 4.223 24 C -0.236 4.236 25 C -0.123 4.123 26 O -0.063 6.063 27 C -0.085 4.085 28 N -0.129 5.129 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.193 0.807 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.109 0.891 44 H 0.167 0.833 45 H 0.161 0.839 46 H 0.212 0.788 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.701 4.787 -6.122 14.890 hybrid contribution 0.786 0.081 0.094 0.796 sum -11.915 4.868 -6.027 14.212 Atomic orbital electron populations 1.22748 0.80918 1.02866 0.99948 1.87906 1.19755 1.27778 1.95410 1.22406 0.93467 0.84954 1.00343 1.21761 0.92917 0.96934 1.05494 1.21440 0.75220 0.97697 1.03728 1.48418 1.06053 1.39686 1.21343 1.22691 0.89662 0.97750 0.94717 1.20237 0.92954 1.12670 1.03167 1.17344 0.82662 0.75709 0.85728 1.90677 1.85591 1.55033 1.13949 1.48040 1.09267 1.63295 1.11135 1.19750 0.99409 0.96675 0.73215 1.21496 1.44734 0.99793 0.92494 0.91621 1.24970 0.94840 0.97818 0.95942 1.69928 1.45996 1.36242 0.99607 0.86597 0.79765 0.84183 0.77308 1.20016 1.21116 1.19791 1.19679 0.89959 0.82911 1.00115 1.23293 0.99430 0.94796 0.88976 1.21678 1.06879 0.92343 1.01379 1.21790 1.05642 0.98193 0.97946 1.23933 1.04548 0.84691 0.99125 1.84099 1.62082 1.16437 1.43679 1.25575 0.94831 0.94631 0.93475 1.77249 1.04173 1.18397 1.13070 0.94082 0.89563 0.93996 0.92897 0.93118 0.89148 0.90394 0.88798 0.89640 0.80698 0.94714 0.93073 0.92223 0.86872 0.89117 0.83326 0.83948 0.78794 0.75823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.28 10.70 -35.23 -0.38 -4.66 16 3 C 0.07 0.59 5.94 37.16 0.22 0.81 16 4 C -0.13 -1.48 5.77 -26.73 -0.15 -1.64 16 5 C 0.14 1.53 6.49 -4.04 -0.03 1.50 16 6 N -0.38 -6.02 3.65 -60.81 -0.22 -6.25 16 7 C 0.10 1.72 11.40 -16.56 -0.19 1.53 16 8 C -0.28 -5.66 5.46 -105.07 -0.57 -6.23 16 9 C 0.60 13.12 7.59 -12.52 -0.10 13.03 16 10 O -0.57 -13.39 16.61 5.28 0.09 -13.30 16 11 N -0.59 -12.55 2.44 -177.71 -0.43 -12.99 16 12 C 0.23 5.32 4.69 -5.19 -0.02 5.30 16 13 C -0.55 -13.39 7.28 -34.44 -0.25 -13.64 16 14 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 15 C 0.07 1.74 5.27 -17.82 -0.09 1.64 16 16 N -0.88 -23.25 13.29 55.43 0.74 -22.52 16 17 Si 0.89 19.87 29.54 -169.99 -5.02 14.84 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 21 C 0.20 3.72 5.99 -5.20 -0.03 3.69 16 22 C -0.01 -0.24 6.90 -35.62 -0.25 -0.49 16 23 C -0.20 -3.44 10.81 -39.70 -0.43 -3.87 16 24 C -0.22 -3.19 10.91 -39.70 -0.43 -3.62 16 25 C -0.05 -0.79 12.09 29.42 0.36 -0.43 16 26 O -0.17 -3.04 10.65 5.71 0.06 -2.98 16 27 C 0.10 2.18 9.55 -16.98 -0.16 2.02 16 28 N -0.31 -6.16 12.34 30.86 0.38 -5.78 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 40 H 0.05 1.26 4.93 -51.93 -0.26 1.01 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.11 1.98 8.07 -51.93 -0.42 1.56 16 43 H 0.09 1.70 7.37 -51.93 -0.38 1.32 16 44 H 0.15 2.43 8.06 -52.49 -0.42 2.00 16 45 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 46 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 47 H 0.23 5.31 4.60 -52.49 -0.24 5.07 16 LS Contribution 402.29 15.07 6.06 6.06 Total: -1.00 -31.83 402.29 -6.50 -38.33 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.76 Total: 8.28 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.02 Total: 0.93 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.46 Total: -47.52 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.23 Total: -20.93 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.83 -6.50 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528321627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.577 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds