Wall clock time and date at job start Wed Apr 1 2020 04:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99858 * 2 1 4 4 C 1.53001 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47424 * 179.97438 * 4 3 2 6 6 N 1.46492 * 109.47412 * 180.02562 * 5 4 3 7 7 C 1.34263 * 125.75728 * 124.99990 * 6 5 4 8 8 C 1.38045 * 107.41908 * 179.97438 * 7 6 5 9 9 C 1.47422 * 126.41555 * 179.97438 * 8 7 6 10 10 O 1.21602 * 120.00018 * 325.31751 * 9 8 7 11 11 N 1.34785 * 119.99920 * 145.31470 * 9 8 7 12 12 C 1.46497 * 120.00034 * 4.10106 * 11 9 8 13 13 C 1.50703 * 109.47323 * 94.75131 * 12 11 9 14 14 H 1.08003 * 119.99711 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00068 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99727 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99747 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47443 * 59.99872 * 17 15 13 19 19 H 1.48504 * 109.46769 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47204 * 299.99388 * 17 15 13 21 21 C 1.46494 * 120.00007 * 184.09794 * 11 9 8 22 22 C 1.50700 * 109.47265 * 89.99972 * 21 11 9 23 23 C 1.34516 * 125.78495 * 89.71407 * 22 21 11 24 24 C 1.41384 * 106.83745 * 179.89113 * 23 22 21 25 25 C 1.34515 * 106.84206 * 0.37547 * 24 23 22 26 26 O 1.34299 * 125.79115 * 270.02539 * 22 21 11 27 27 C 1.41297 * 107.16796 * 359.97438 * 8 7 6 28 28 N 1.30449 * 108.02524 * 359.74006 * 27 8 7 29 29 H 1.08997 * 109.46873 * 60.00320 * 1 2 3 30 30 H 1.08999 * 109.46946 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46895 * 300.00432 * 1 2 3 32 32 H 1.08997 * 109.47392 * 60.00083 * 3 2 1 33 33 H 1.09004 * 109.46997 * 299.99498 * 3 2 1 34 34 H 1.08997 * 109.47812 * 300.00058 * 4 3 2 35 35 H 1.09008 * 109.47272 * 59.99820 * 4 3 2 36 36 H 1.09007 * 109.46605 * 300.00351 * 5 4 3 37 37 H 1.08995 * 109.47031 * 59.99536 * 5 4 3 38 38 H 1.08001 * 126.28984 * 0.02562 * 7 6 5 39 39 H 1.08997 * 109.47370 * 214.75537 * 12 11 9 40 40 H 1.09001 * 109.47343 * 334.75703 * 12 11 9 41 41 H 0.97002 * 119.99187 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.47141 * 210.00387 * 21 11 9 43 43 H 1.09005 * 109.47205 * 329.99869 * 21 11 9 44 44 H 1.07999 * 126.58259 * 0.03205 * 23 22 21 45 45 H 1.08004 * 126.58165 * 180.16341 * 24 23 22 46 46 H 1.07997 * 125.79010 * 179.75128 * 25 24 23 47 47 H 1.07998 * 125.98321 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.4496 3.0274 -0.8928 8 6 7.7362 2.6762 -0.5366 9 6 8.9749 3.0670 -1.2339 10 8 8.9809 3.1816 -2.4445 11 7 10.1008 3.2974 -0.5295 12 6 10.1181 3.0728 0.9180 13 6 10.6439 1.6900 1.2056 14 1 10.9364 1.0434 0.3914 15 6 10.7516 1.2505 2.5080 16 7 10.3959 2.0381 3.4993 17 14 11.4041 -0.4632 2.8643 18 1 12.7831 -0.5894 2.3279 19 1 11.4204 -0.6914 4.3316 20 1 10.5268 -1.4714 2.2168 21 6 11.3071 3.7724 -1.2115 22 6 11.3123 5.2793 -1.2320 23 6 11.8439 6.0770 -0.2883 24 6 11.6281 7.4093 -0.7092 25 6 10.9703 7.3462 -1.8808 26 8 10.7817 6.0535 -2.1926 27 6 7.6436 1.8720 0.6215 28 7 6.3823 1.7591 0.9347 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 3.8568 0.6439 0.8908 35 1 3.8575 0.6435 -0.8891 36 1 3.8364 3.1227 -0.8905 37 1 3.8358 3.1239 0.8894 38 1 6.1643 3.6410 -1.7344 39 1 10.7625 3.8126 1.3929 40 1 9.1062 3.1658 1.3123 41 1 10.4714 1.7286 4.4155 42 1 12.1893 3.4132 -0.6817 43 1 11.3188 3.3951 -2.2341 44 1 12.3421 5.7604 0.6161 45 1 11.9303 8.3059 -0.1882 46 1 10.6481 8.1917 -2.4706 47 1 8.4722 1.4316 1.1562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528321627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:10 Heat of formation + Delta-G solvation = -0.487774 kcal Electronic energy + Delta-G solvation = -30231.816686 eV Core-core repulsion = 25997.115660 eV Total energy + Delta-G solvation = -4234.701026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.42117 -42.30813 -40.19889 -38.96553 -36.91574 -35.76417 -34.69039 -33.82535 -32.42513 -31.87043 -30.77731 -29.18562 -28.09642 -27.01697 -25.96138 -24.94215 -23.21363 -23.05392 -22.57436 -21.56764 -21.40137 -20.15595 -18.75272 -18.44498 -17.97642 -17.46858 -17.40083 -17.17067 -16.92404 -16.61746 -16.24632 -16.22993 -15.97496 -15.56500 -15.36103 -14.98801 -14.79691 -14.45312 -14.27005 -13.89295 -13.70192 -13.67459 -13.51142 -13.29175 -13.23220 -13.00623 -12.84374 -12.73580 -12.58419 -12.42453 -12.24523 -12.07863 -12.01075 -11.73935 -11.70514 -10.88351 -10.76950 -10.63454 -10.58457 -10.36913 -9.67920 -9.48470 -9.34596 -8.17614 -6.32094 0.67087 0.77643 1.32896 1.45993 1.48198 1.50599 1.54676 1.71378 2.11920 2.38044 2.44690 2.61255 2.78460 3.12363 3.57926 3.83329 3.87726 3.91981 4.03016 4.07464 4.17703 4.19648 4.28386 4.33029 4.38621 4.44960 4.46454 4.53790 4.55801 4.62135 4.66325 4.85731 4.86741 4.90349 4.97244 4.99751 5.07383 5.12367 5.23568 5.29916 5.61891 5.66375 5.72657 5.81742 6.01631 6.08493 6.23521 6.28445 6.56523 6.68128 6.84102 7.31137 7.42428 8.86803 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008174 B = 0.003210 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.854628 B = 8721.514594 C =11377.880658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.068 3.932 4 C -0.126 4.126 5 C 0.131 3.869 6 N -0.360 5.360 7 C 0.126 3.874 8 C -0.313 4.313 9 C 0.593 3.407 10 O -0.592 6.592 11 N -0.590 5.590 12 C 0.250 3.750 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.032 3.968 16 N -0.910 5.910 17 Si 0.948 3.052 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.197 3.803 22 C -0.042 4.042 23 C -0.207 4.207 24 C -0.225 4.225 25 C -0.043 4.043 26 O -0.190 6.190 27 C 0.085 3.915 28 N -0.330 5.330 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.216 0.784 39 H 0.018 0.982 40 H 0.037 0.963 41 H 0.268 0.732 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.147 0.853 45 H 0.173 0.827 46 H 0.241 0.759 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 7.174 -7.369 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.008 4.008 4 C -0.165 4.165 5 C 0.011 3.989 6 N -0.139 5.139 7 C -0.026 4.026 8 C -0.328 4.328 9 C 0.383 3.617 10 O -0.475 6.475 11 N -0.319 5.319 12 C 0.129 3.871 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.170 4.170 16 N -0.548 5.548 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.200 1.200 21 C 0.074 3.926 22 C -0.093 4.093 23 C -0.227 4.227 24 C -0.243 4.243 25 C -0.110 4.110 26 O -0.086 6.086 27 C -0.101 4.101 28 N -0.150 5.150 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.121 0.879 38 H 0.232 0.768 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.136 0.864 43 H 0.105 0.895 44 H 0.165 0.835 45 H 0.190 0.810 46 H 0.257 0.743 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.538 6.457 -7.175 17.451 hybrid contribution 1.221 -0.369 0.386 1.333 sum -13.317 6.088 -6.789 16.140 Atomic orbital electron populations 1.22927 0.79130 1.03732 1.01180 1.87854 1.21825 1.29081 1.95704 1.22432 0.91429 0.84681 1.02298 1.21647 0.94998 0.96599 1.03232 1.21990 0.71841 0.98141 1.06883 1.48793 1.07820 1.37595 1.19683 1.23191 0.88301 0.96347 0.94762 1.20299 0.93989 1.14640 1.03844 1.17593 0.83171 0.75311 0.85596 1.90641 1.85985 1.56320 1.14528 1.48037 1.10152 1.63325 1.10378 1.19343 0.97940 0.95518 0.74291 1.21579 1.44185 1.00224 0.92348 0.92357 1.25554 0.95023 1.00634 0.95777 1.70016 1.47242 1.37712 0.99813 0.85747 0.79298 0.80509 0.77045 1.19353 1.20881 1.19974 1.19697 0.89203 0.84137 0.99606 1.23036 1.01661 0.94423 0.90183 1.21888 1.06172 0.93739 1.00890 1.22142 1.05792 0.98042 0.98372 1.24874 1.02699 0.84234 0.99184 1.84076 1.62559 1.17992 1.43969 1.25084 0.94946 0.95841 0.94220 1.77146 1.03875 1.19475 1.14524 0.92570 0.89066 0.92958 0.91462 0.90476 0.92306 0.91822 0.84202 0.87892 0.76768 0.96403 0.94483 0.92270 0.86405 0.89476 0.83524 0.80997 0.74330 0.78635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.72 10.70 -148.98 -1.59 -10.31 16 3 C 0.07 1.05 5.94 71.98 0.43 1.48 16 4 C -0.13 -2.64 5.77 30.60 0.18 -2.46 16 5 C 0.13 2.43 6.49 86.38 0.56 2.99 16 6 N -0.36 -10.99 3.65 -346.30 -1.26 -12.25 16 7 C 0.13 4.04 11.40 84.28 0.96 5.00 16 8 C -0.31 -13.01 5.46 -20.15 -0.11 -13.12 16 9 C 0.59 26.68 7.59 86.66 0.66 27.34 16 10 O -0.59 -28.01 16.61 -4.04 -0.07 -28.08 16 11 N -0.59 -26.15 2.44 -834.40 -2.04 -28.19 16 12 C 0.25 12.13 4.69 85.63 0.40 12.53 16 13 C -0.54 -27.75 7.28 25.60 0.19 -27.57 16 14 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 15 C 0.03 1.65 5.27 84.66 0.45 2.10 16 16 N -0.91 -49.44 13.29 21.45 0.28 -49.16 16 17 Si 0.95 41.60 29.54 68.60 2.03 43.62 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C 0.20 7.70 5.99 85.63 0.51 8.21 16 22 C -0.04 -1.55 6.90 24.83 0.17 -1.38 16 23 C -0.21 -6.99 10.81 22.19 0.24 -6.75 16 24 C -0.22 -6.16 10.91 22.19 0.24 -5.92 16 25 C -0.04 -1.12 12.09 66.97 0.81 -0.31 16 26 O -0.19 -6.73 10.65 -2.48 -0.03 -6.75 16 27 C 0.09 3.79 9.55 85.65 0.82 4.61 16 28 N -0.33 -13.31 12.34 -56.27 -0.69 -14.00 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.14 1.41 8.06 -2.38 -0.02 1.39 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.22 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 40 H 0.04 1.93 4.93 -2.39 -0.01 1.92 16 41 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.12 4.34 8.07 -2.39 -0.02 4.32 16 43 H 0.09 3.41 7.37 -2.38 -0.02 3.39 16 44 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 45 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 46 H 0.24 3.77 8.06 -2.91 -0.02 3.75 16 47 H 0.20 9.85 4.60 -2.91 -0.01 9.84 16 Total: -1.00 -72.36 402.29 5.36 -67.00 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.98 Total: 29.78 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 7.75 Total: 8.33 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -3.71 Total: -103.60 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.69 Total: -45.14 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -72.36 5.36 -67.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528321627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.517 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds