Wall clock time and date at job start Wed Apr 1 2020 04:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34710 * 117.00056 * 2 1 4 4 O 1.21467 * 119.99963 * 0.02562 * 3 2 1 5 5 C 1.47736 * 120.00046 * 179.97438 * 3 2 1 6 6 C 1.39631 * 120.52924 * 0.02562 * 5 3 2 7 7 N 1.31651 * 120.71230 * 180.02562 * 6 5 3 8 8 C 1.31887 * 121.96539 * 359.97021 * 7 6 5 9 9 C 1.38942 * 120.99303 * 359.97438 * 8 7 6 10 10 N 1.40008 * 120.41982 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00510 * 144.93495 * 10 9 8 12 12 O 1.21590 * 119.99451 * 4.48611 * 11 10 9 13 13 N 1.34776 * 120.00693 * 184.49213 * 11 10 9 14 14 C 1.46934 * 120.62452 * 354.64850 * 13 11 10 15 15 C 1.53616 * 108.54003 * 126.37210 * 14 13 11 16 16 C 1.53039 * 109.24480 * 54.85485 * 15 14 13 17 17 C 1.52995 * 109.46515 * 178.49016 * 16 15 14 18 18 C 1.50710 * 109.47212 * 295.06966 * 17 16 15 19 19 H 1.07997 * 119.99367 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99955 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00271 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47166 * 59.99648 * 22 20 18 24 24 H 1.48494 * 109.47078 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46888 * 299.99698 * 22 20 18 26 26 C 1.53041 * 109.54109 * 298.51308 * 16 15 14 27 27 C 1.46915 * 120.63434 * 174.93355 * 13 11 10 28 28 C 1.39008 * 119.16797 * 0.29523 * 9 8 7 29 29 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46805 * 300.00079 * 1 2 3 31 31 H 1.09001 * 109.46860 * 59.99909 * 1 2 3 32 32 H 1.08000 * 119.64523 * 359.97438 * 6 5 3 33 33 H 1.08005 * 119.50821 * 180.02562 * 8 7 6 34 34 H 0.97005 * 120.00051 * 324.94313 * 10 9 8 35 35 H 1.09002 * 109.58352 * 246.20436 * 14 13 11 36 36 H 1.09004 * 109.58645 * 6.62760 * 14 13 11 37 37 H 1.09002 * 109.64103 * 294.86172 * 15 14 13 38 38 H 1.09002 * 109.46054 * 174.73575 * 15 14 13 39 39 H 1.09004 * 109.45015 * 58.52040 * 16 15 14 40 40 H 1.09005 * 109.47464 * 55.06423 * 17 16 15 41 41 H 1.08999 * 109.47568 * 175.07090 * 17 16 15 42 42 H 0.97004 * 119.99771 * 180.02562 * 21 20 18 43 43 H 1.09013 * 109.49292 * 301.41371 * 26 16 15 44 44 H 1.08997 * 109.52749 * 181.33097 * 26 16 15 45 45 H 1.09007 * 109.59010 * 353.36726 * 27 13 11 46 46 H 1.09002 * 109.59333 * 113.65384 * 27 13 11 47 47 H 1.08009 * 120.88857 * 179.70449 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3102 0.1136 0.0006 7 7 5.6251 0.1783 0.0016 8 6 6.2675 1.3302 0.0021 9 6 5.5758 2.5352 0.0010 10 7 6.2699 3.7510 0.0009 11 6 5.7750 4.8097 -0.6705 12 8 4.6869 4.7340 -1.2079 13 7 6.4860 5.9521 -0.7463 14 6 7.7468 6.0996 -0.0064 15 6 8.8462 6.5202 -0.9934 16 6 8.4018 7.7828 -1.7353 17 6 9.5090 8.2278 -2.6929 18 6 10.7244 8.6359 -1.9006 19 1 10.7087 8.5827 -0.8221 20 6 11.8565 9.0760 -2.5528 21 7 11.8761 9.1393 -3.8663 22 14 13.3632 9.5811 -1.5708 23 1 13.8387 8.4278 -0.7653 24 1 14.4383 10.0120 -2.5002 25 1 13.0106 10.7048 -0.6662 26 6 7.1281 7.4877 -2.5307 27 6 6.0121 7.0759 -1.5655 28 6 4.1858 2.5184 0.0056 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 3.8228 -0.8502 0.0006 33 1 7.3475 1.3369 0.0025 34 1 7.1072 3.8315 0.4841 35 1 7.6316 6.8626 0.7634 36 1 8.0127 5.1487 0.4556 37 1 9.0201 5.7187 -1.7114 38 1 9.7665 6.7246 -0.4464 39 1 8.2042 8.5765 -1.0148 40 1 9.7683 7.4031 -3.3569 41 1 9.1597 9.0743 -3.2841 42 1 12.6729 9.4487 -4.3251 43 1 7.3182 6.6769 -3.2342 44 1 6.8251 8.3804 -3.0777 45 1 5.1330 6.7695 -2.1327 46 1 5.7559 7.9161 -0.9201 47 1 3.6202 3.4386 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582001598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:46 Heat of formation + Delta-G solvation = -75.040358 kcal Electronic energy + Delta-G solvation = -29843.933104 eV Core-core repulsion = 25605.999235 eV Total energy + Delta-G solvation = -4237.933869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44987 -40.64580 -39.70761 -37.72311 -36.80119 -35.40344 -34.19053 -32.81832 -32.27259 -31.05667 -30.16726 -28.23515 -27.99186 -25.05431 -24.97751 -23.85973 -23.03454 -22.07746 -21.47487 -20.32245 -19.49204 -18.77984 -18.16602 -17.49313 -17.20870 -16.73044 -16.53555 -16.32938 -16.23510 -15.49903 -15.21739 -14.61273 -14.43104 -14.19269 -14.07730 -13.80418 -13.54271 -13.52336 -13.29602 -13.23174 -12.93353 -12.81780 -12.53286 -12.32348 -11.90938 -11.27180 -11.25508 -11.18454 -11.14180 -11.08067 -10.93150 -10.75434 -10.57268 -10.36640 -10.20628 -10.13732 -9.80902 -9.71157 -9.37879 -9.05870 -8.81528 -8.41423 -8.38306 -6.05214 -4.07931 0.12927 0.83757 2.15035 2.16486 2.37771 2.94434 3.27488 3.33528 3.34267 3.45210 3.56288 4.00231 4.35528 4.39614 4.39935 4.57708 4.71478 4.73621 4.82104 4.85341 4.95695 5.15446 5.20366 5.27115 5.34046 5.40671 5.53073 5.55108 5.60973 5.76987 5.78668 5.88156 5.94693 5.97021 6.18074 6.27262 6.34984 6.39207 6.47859 6.75649 6.85571 6.89360 7.02008 7.32673 7.46927 7.60159 7.63435 7.74412 7.93691 8.30509 8.35314 8.98294 9.56191 11.05816 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.001942 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.246886 B =14414.089319 C =15111.036752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.515 3.485 4 O -0.495 6.495 5 C -0.162 4.162 6 C 0.135 3.865 7 N -0.469 5.469 8 C 0.108 3.892 9 C 0.114 3.886 10 N -0.684 5.684 11 C 0.706 3.294 12 O -0.578 6.578 13 N -0.613 5.613 14 C 0.106 3.894 15 C -0.119 4.119 16 C -0.080 4.080 17 C 0.027 3.973 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.131 4.131 27 C 0.129 3.871 28 C -0.016 4.016 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.261 0.739 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.864 -17.673 10.542 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.358 3.642 4 O -0.382 6.382 5 C -0.166 4.166 6 C -0.025 4.025 7 N -0.176 5.176 8 C -0.052 4.052 9 C 0.016 3.984 10 N -0.335 5.335 11 C 0.408 3.592 12 O -0.455 6.455 13 N -0.349 5.349 14 C -0.017 4.017 15 C -0.157 4.157 16 C -0.099 4.099 17 C -0.010 4.010 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.169 4.169 27 C 0.006 3.994 28 C -0.044 4.044 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.252 0.748 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.239 -18.037 9.968 26.868 hybrid contribution 0.808 1.289 0.637 1.649 sum -16.431 -16.748 10.605 25.748 Atomic orbital electron populations 1.23323 0.75546 1.03934 1.02867 1.86518 1.23881 1.32303 1.84431 1.20887 0.88594 0.81667 0.73052 1.90883 1.66510 1.35955 1.44873 1.20014 0.90586 0.95373 1.10597 1.23123 0.89061 0.97966 0.92314 1.67777 1.09821 1.27421 1.12599 1.22954 1.00989 0.85980 0.95265 1.18421 0.91472 0.86416 1.02082 1.42746 1.27134 1.08889 1.54711 1.15822 0.83987 0.80178 0.79240 1.90930 1.20239 1.82414 1.51957 1.47397 1.23754 1.13666 1.50071 1.22002 0.83888 1.00729 0.95072 1.21992 0.97072 0.98727 0.97904 1.21189 0.94917 0.95750 0.98058 1.19123 0.91624 0.96326 0.93879 1.21180 0.97925 1.43654 0.92956 0.92661 1.25024 0.98770 0.95817 0.94821 1.69951 1.29048 1.47196 1.07124 0.86701 0.82686 0.78983 0.79860 1.20305 1.21358 1.20296 1.22063 0.95493 1.01512 0.97826 1.21650 0.97942 0.86706 0.93055 1.21942 0.93171 0.98590 0.90686 0.87735 0.91686 0.91625 0.81068 0.81582 0.74774 0.90891 0.91533 0.92110 0.89517 0.92214 0.96631 0.96513 0.92941 0.92004 0.90831 0.89400 0.91570 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.16 9.84 -40.52 -0.40 -3.56 16 3 C 0.51 5.92 7.91 34.61 0.27 6.20 16 4 O -0.49 -7.14 16.21 -19.24 -0.31 -7.45 16 5 C -0.16 -1.79 5.89 -104.86 -0.62 -2.41 16 6 C 0.13 1.27 10.78 -17.11 -0.18 1.08 16 7 N -0.47 -4.73 10.34 -12.75 -0.13 -4.86 16 8 C 0.11 1.00 11.11 -17.27 -0.19 0.81 16 9 C 0.11 1.25 6.31 -83.58 -0.53 0.72 16 10 N -0.68 -7.28 5.27 -14.16 -0.07 -7.35 16 11 C 0.71 9.89 8.15 -86.92 -0.71 9.18 16 12 O -0.58 -9.96 13.28 5.29 0.07 -9.89 16 13 N -0.61 -8.18 2.97 -178.23 -0.53 -8.71 16 14 C 0.11 1.24 6.46 -3.49 -0.02 1.21 16 15 C -0.12 -1.84 5.21 -26.39 -0.14 -1.98 16 16 C -0.08 -1.45 2.10 -90.58 -0.19 -1.64 16 17 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 18 C -0.52 -13.55 8.39 -34.44 -0.29 -13.84 16 19 H 0.06 1.37 7.05 -52.49 -0.37 1.00 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 22 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 27 C 0.13 1.80 6.41 -3.72 -0.02 1.77 16 28 C -0.02 -0.20 8.34 -38.66 -0.32 -0.52 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 1.18 7.62 -52.49 -0.40 0.78 16 33 H 0.17 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.41 3.20 6.28 -40.82 -0.26 2.94 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.57 5.56 -51.93 -0.29 0.28 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.43 6.91 -51.93 -0.36 1.07 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.29 7.04 -51.92 -0.37 0.92 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.17 2.46 6.02 -52.48 -0.32 2.14 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -33.54 387.33 -8.62 -42.17 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.56 Total: 1.69 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.24 Total: 1.67 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.00 Total: -46.16 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.64 Total: -20.90 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.54 -8.62 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582001598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.874 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds