Wall clock time and date at job start Wed Apr 1 2020 04:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34710 * 117.00056 * 2 1 4 4 O 1.21467 * 119.99963 * 0.02562 * 3 2 1 5 5 C 1.47736 * 120.00046 * 179.97438 * 3 2 1 6 6 C 1.39631 * 120.52924 * 0.02562 * 5 3 2 7 7 N 1.31651 * 120.71230 * 180.02562 * 6 5 3 8 8 C 1.31887 * 121.96539 * 359.97021 * 7 6 5 9 9 C 1.38942 * 120.99303 * 359.97438 * 8 7 6 10 10 N 1.40008 * 120.41982 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00510 * 144.93495 * 10 9 8 12 12 O 1.21590 * 119.99451 * 4.48611 * 11 10 9 13 13 N 1.34776 * 120.00693 * 184.49213 * 11 10 9 14 14 C 1.46934 * 120.62452 * 354.64850 * 13 11 10 15 15 C 1.53616 * 108.54003 * 126.37210 * 14 13 11 16 16 C 1.53039 * 109.24480 * 54.85485 * 15 14 13 17 17 C 1.52995 * 109.46515 * 178.49016 * 16 15 14 18 18 C 1.50710 * 109.47212 * 295.06966 * 17 16 15 19 19 H 1.07997 * 119.99367 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99955 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00271 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47166 * 59.99648 * 22 20 18 24 24 H 1.48494 * 109.47078 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46888 * 299.99698 * 22 20 18 26 26 C 1.53041 * 109.54109 * 298.51308 * 16 15 14 27 27 C 1.46915 * 120.63434 * 174.93355 * 13 11 10 28 28 C 1.39008 * 119.16797 * 0.29523 * 9 8 7 29 29 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46805 * 300.00079 * 1 2 3 31 31 H 1.09001 * 109.46860 * 59.99909 * 1 2 3 32 32 H 1.08000 * 119.64523 * 359.97438 * 6 5 3 33 33 H 1.08005 * 119.50821 * 180.02562 * 8 7 6 34 34 H 0.97005 * 120.00051 * 324.94313 * 10 9 8 35 35 H 1.09002 * 109.58352 * 246.20436 * 14 13 11 36 36 H 1.09004 * 109.58645 * 6.62760 * 14 13 11 37 37 H 1.09002 * 109.64103 * 294.86172 * 15 14 13 38 38 H 1.09002 * 109.46054 * 174.73575 * 15 14 13 39 39 H 1.09004 * 109.45015 * 58.52040 * 16 15 14 40 40 H 1.09005 * 109.47464 * 55.06423 * 17 16 15 41 41 H 1.08999 * 109.47568 * 175.07090 * 17 16 15 42 42 H 0.97004 * 119.99771 * 180.02562 * 21 20 18 43 43 H 1.09013 * 109.49292 * 301.41371 * 26 16 15 44 44 H 1.08997 * 109.52749 * 181.33097 * 26 16 15 45 45 H 1.09007 * 109.59010 * 353.36726 * 27 13 11 46 46 H 1.09002 * 109.59333 * 113.65384 * 27 13 11 47 47 H 1.08009 * 120.88857 * 179.70449 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3102 0.1136 0.0006 7 7 5.6251 0.1783 0.0016 8 6 6.2675 1.3302 0.0021 9 6 5.5758 2.5352 0.0010 10 7 6.2699 3.7510 0.0009 11 6 5.7750 4.8097 -0.6705 12 8 4.6869 4.7340 -1.2079 13 7 6.4860 5.9521 -0.7463 14 6 7.7468 6.0996 -0.0064 15 6 8.8462 6.5202 -0.9934 16 6 8.4018 7.7828 -1.7353 17 6 9.5090 8.2278 -2.6929 18 6 10.7244 8.6359 -1.9006 19 1 10.7087 8.5827 -0.8221 20 6 11.8565 9.0760 -2.5528 21 7 11.8761 9.1393 -3.8663 22 14 13.3632 9.5811 -1.5708 23 1 13.8387 8.4278 -0.7653 24 1 14.4383 10.0120 -2.5002 25 1 13.0106 10.7048 -0.6662 26 6 7.1281 7.4877 -2.5307 27 6 6.0121 7.0759 -1.5655 28 6 4.1858 2.5184 0.0056 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 3.8228 -0.8502 0.0006 33 1 7.3475 1.3369 0.0025 34 1 7.1072 3.8315 0.4841 35 1 7.6316 6.8626 0.7634 36 1 8.0127 5.1487 0.4556 37 1 9.0201 5.7187 -1.7114 38 1 9.7665 6.7246 -0.4464 39 1 8.2042 8.5765 -1.0148 40 1 9.7683 7.4031 -3.3569 41 1 9.1597 9.0743 -3.2841 42 1 12.6729 9.4487 -4.3251 43 1 7.3182 6.6769 -3.2342 44 1 6.8251 8.3804 -3.0777 45 1 5.1330 6.7695 -2.1327 46 1 5.7559 7.9161 -0.9201 47 1 3.6202 3.4386 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582001598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:45 Heat of formation + Delta-G solvation = -95.838472 kcal Electronic energy + Delta-G solvation = -29844.834978 eV Core-core repulsion = 25605.999235 eV Total energy + Delta-G solvation = -4238.835743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.35042 -41.57596 -40.59798 -38.95038 -37.62820 -36.38997 -35.76218 -34.08182 -33.59514 -32.21189 -31.15040 -29.66724 -28.78981 -26.49343 -25.79888 -24.94459 -24.23323 -23.44337 -22.38693 -21.56274 -20.64934 -19.76687 -19.14224 -18.38904 -18.34091 -18.02161 -17.50814 -17.35653 -17.13795 -16.57133 -16.50490 -16.20010 -15.43170 -15.22449 -15.12598 -14.78822 -14.70919 -14.53423 -14.44895 -14.29037 -14.18480 -13.90476 -13.63138 -13.35943 -13.09997 -12.96142 -12.77448 -12.47826 -12.33968 -12.22780 -12.08958 -12.04304 -11.87890 -11.75800 -11.53446 -11.29807 -11.04820 -10.97723 -10.84348 -10.63781 -10.49494 -9.86649 -9.36413 -8.14062 -6.23708 -0.67529 -0.01205 1.28382 1.31956 1.43881 1.45766 1.53189 1.53346 1.91257 2.44616 2.62191 2.65687 3.19897 3.29319 3.59608 3.64380 3.75053 3.83371 3.89623 4.01976 4.06742 4.17839 4.20816 4.31433 4.32791 4.40143 4.50802 4.65425 4.70160 4.77466 4.81237 4.86835 4.90157 4.93894 5.01239 5.09359 5.17359 5.28684 5.33365 5.39527 5.51459 5.54777 5.58932 5.75937 5.84510 5.92016 6.30704 6.50730 6.67156 6.69638 6.93502 7.27429 7.45287 8.97513 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.001942 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.246886 B =14414.089319 C =15111.036752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.517 3.483 4 O -0.534 6.534 5 C -0.173 4.173 6 C 0.149 3.851 7 N -0.477 5.477 8 C 0.125 3.875 9 C 0.103 3.897 10 N -0.667 5.667 11 C 0.703 3.297 12 O -0.615 6.615 13 N -0.614 5.614 14 C 0.113 3.887 15 C -0.113 4.113 16 C -0.074 4.074 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.070 0.930 20 C -0.004 4.004 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.263 1.263 24 H -0.292 1.292 25 H -0.268 1.268 26 C -0.122 4.122 27 C 0.137 3.863 28 C -0.032 4.032 29 H 0.142 0.858 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.198 0.802 33 H 0.200 0.800 34 H 0.428 0.572 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.065 0.935 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.260 0.740 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 -19.626 13.077 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.362 3.638 4 O -0.425 6.425 5 C -0.177 4.177 6 C -0.009 4.009 7 N -0.185 5.185 8 C -0.035 4.035 9 C 0.005 3.995 10 N -0.320 5.320 11 C 0.405 3.595 12 O -0.495 6.495 13 N -0.350 5.350 14 C -0.008 4.008 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.088 0.912 20 C -0.202 4.202 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.188 1.188 24 H -0.218 1.218 25 H -0.193 1.193 26 C -0.160 4.160 27 C 0.014 3.986 28 C -0.060 4.060 29 H 0.159 0.841 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.215 0.785 33 H 0.217 0.783 34 H 0.271 0.729 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.621 -20.035 12.547 28.898 hybrid contribution 0.564 1.828 -0.206 1.924 sum -16.058 -18.208 12.342 27.234 Atomic orbital electron populations 1.23658 0.73870 1.06279 1.02643 1.86512 1.25483 1.30702 1.83692 1.21046 0.88845 0.81816 0.72049 1.90863 1.67322 1.37326 1.46977 1.20047 0.90554 0.95544 1.11579 1.23496 0.88869 0.98281 0.90271 1.67909 1.09959 1.27560 1.13075 1.23424 1.02336 0.84874 0.92818 1.18507 0.90932 0.87010 1.03086 1.42487 1.27392 1.08000 1.54119 1.15960 0.83604 0.80715 0.79213 1.90921 1.21975 1.83044 1.53531 1.47400 1.24204 1.13324 1.50036 1.22052 0.81506 1.03365 0.93915 1.21866 0.98275 0.96840 0.98177 1.21039 0.93685 0.97316 0.97181 1.19030 0.93353 0.93983 0.94219 1.21647 0.98396 1.42447 0.93831 0.91191 1.25974 1.02332 0.96099 0.95753 1.70113 1.29900 1.48778 1.09079 0.85575 0.78484 0.79118 0.78307 1.18792 1.21818 1.19284 1.21932 0.95349 1.00950 0.97816 1.21500 0.96528 0.87588 0.93005 1.21808 0.94065 0.98146 0.92002 0.84051 0.91742 0.92141 0.78484 0.78341 0.72945 0.89115 0.87729 0.93303 0.90184 0.91679 0.99729 0.99760 0.93163 0.93568 0.91002 0.90215 0.89801 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.80 9.84 -56.20 -0.55 -6.35 16 3 C 0.52 11.94 7.91 70.33 0.56 12.49 16 4 O -0.53 -16.07 16.21 19.94 0.32 -15.75 16 5 C -0.17 -3.74 5.89 -20.02 -0.12 -3.86 16 6 C 0.15 2.49 10.78 85.06 0.92 3.41 16 7 N -0.48 -8.29 10.34 -194.25 -2.01 -10.30 16 8 C 0.12 1.96 11.11 84.85 0.94 2.90 16 9 C 0.10 2.08 6.31 38.19 0.24 2.32 16 10 N -0.67 -12.82 5.27 -316.96 -1.67 -14.49 16 11 C 0.70 18.96 8.15 179.05 1.46 20.42 16 12 O -0.61 -21.45 13.28 -4.00 -0.05 -21.50 16 13 N -0.61 -15.40 2.97 -836.06 -2.48 -17.88 16 14 C 0.11 2.31 6.46 86.50 0.56 2.87 16 15 C -0.11 -3.35 5.21 30.81 0.16 -3.19 16 16 C -0.07 -2.64 2.10 -10.77 -0.02 -2.67 16 17 C 0.03 1.54 4.45 29.85 0.13 1.67 16 18 C -0.53 -27.55 8.39 25.60 0.21 -27.33 16 19 H 0.07 3.39 7.05 -2.91 -0.02 3.37 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.94 -56.00 13.29 21.44 0.28 -55.72 16 22 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 C -0.12 -3.91 5.36 30.67 0.16 -3.75 16 27 C 0.14 3.72 6.41 86.37 0.55 4.27 16 28 C -0.03 -0.80 8.34 22.87 0.19 -0.61 16 29 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.20 2.14 7.62 -2.91 -0.02 2.12 16 33 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.43 5.13 6.28 -92.70 -0.58 4.55 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 1.35 5.56 -2.39 -0.01 1.33 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.49 6.91 -2.39 -0.02 2.47 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 41 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.08 2.35 7.04 -2.38 -0.02 2.33 16 46 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 47 H 0.14 4.29 6.02 -2.91 -0.02 4.27 16 Total: -1.00 -76.49 387.33 3.91 -72.58 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.42 Total: 14.41 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 7.61 Total: 10.67 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -5.87 Total: -98.39 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.28 Total: -43.60 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.49 3.91 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582001598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.254 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds