Wall clock time and date at job start Wed Apr 1 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00207 * 2 1 4 4 H 1.48495 * 109.47398 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46963 * 300.00109 * 3 2 1 6 6 H 1.48504 * 109.47343 * 59.99624 * 3 2 1 7 7 C 1.37873 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00538 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.88388 * 62.41846 * 9 7 2 11 11 C 1.55161 * 111.00092 * 298.54466 * 9 7 2 12 12 C 1.54316 * 102.94167 * 206.38119 * 11 9 7 13 13 N 1.47024 * 107.27063 * 22.19346 * 12 11 9 14 14 C 1.34778 * 125.64676 * 181.02554 * 13 12 11 15 15 O 1.21287 * 119.99703 * 184.70668 * 14 13 12 16 16 C 1.50697 * 120.00385 * 4.70241 * 14 13 12 17 17 C 1.53005 * 112.84953 * 290.11179 * 16 14 13 18 18 C 1.50699 * 109.47239 * 305.93675 * 17 16 14 19 19 C 1.38267 * 119.98172 * 95.56648 * 18 17 16 20 20 C 1.38229 * 120.04624 * 180.02562 * 19 18 17 21 21 C 1.38220 * 120.02682 * 359.97438 * 20 19 18 22 22 C 1.38434 * 119.97358 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.02544 * 180.02562 * 22 21 20 24 24 C 1.38173 * 119.98847 * 275.30076 * 18 17 16 25 25 C 1.53780 * 113.61412 * 61.30534 * 16 14 13 26 26 C 1.53775 * 87.08240 * 89.11620 * 25 16 14 27 27 C 1.53778 * 87.17315 * 25.39366 * 26 25 16 28 28 C 1.47425 * 108.70235 * 1.28497 * 13 12 11 29 29 H 0.97000 * 120.00214 * 359.97438 * 1 2 3 30 30 H 0.96696 * 114.00645 * 290.40367 * 10 9 7 31 31 H 1.08999 * 110.71990 * 88.01686 * 11 9 7 32 32 H 1.09003 * 110.87319 * 324.81894 * 11 9 7 33 33 H 1.09003 * 109.88443 * 262.77636 * 12 11 9 34 34 H 1.09002 * 109.88704 * 141.60813 * 12 11 9 35 35 H 1.09001 * 109.47204 * 65.93846 * 17 16 14 36 36 H 1.09005 * 109.46667 * 185.93866 * 17 16 14 37 37 H 1.07994 * 119.97672 * 0.03197 * 19 18 17 38 38 H 1.08001 * 119.98558 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.01065 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00988 * 0.02562 * 24 18 17 41 41 H 1.09007 * 113.61143 * 334.57090 * 25 16 14 42 42 H 1.09005 * 113.61849 * 203.66833 * 25 16 14 43 43 H 1.09005 * 113.61637 * 139.98291 * 26 25 16 44 44 H 1.08994 * 113.61710 * 270.80209 * 26 25 16 45 45 H 1.08994 * 113.61862 * 89.15205 * 27 26 25 46 46 H 1.08998 * 113.61803 * 220.06234 * 27 26 25 47 47 H 1.09003 * 110.36519 * 94.48434 * 28 13 12 48 48 H 1.08999 * 110.36624 * 216.80415 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4614 -2.6316 -1.1831 11 6 0.3731 -2.6345 1.2727 12 6 0.2569 -4.1628 1.4516 13 7 1.3927 -4.7726 0.7446 14 6 1.6394 -6.0940 0.6472 15 8 2.6550 -6.4833 0.1104 16 6 0.6536 -7.0878 1.2052 17 6 0.6072 -7.0840 2.7346 18 6 1.9973 -7.2874 3.2798 19 6 2.7648 -6.1952 3.6404 20 6 4.0402 -6.3802 4.1401 21 6 4.5496 -7.6575 4.2804 22 6 3.7820 -8.7517 3.9198 23 9 4.2787 -10.0005 4.0570 24 6 2.5024 -8.5654 3.4244 25 6 -0.7342 -7.0150 0.5467 26 6 -0.2121 -8.0307 -0.4830 27 6 0.7845 -8.4941 0.5925 28 6 2.2204 -3.6990 0.1652 29 1 -0.4850 0.8400 0.0004 30 1 -0.2917 -2.0265 -1.2233 31 1 -0.6089 -2.1892 1.1127 32 1 0.8646 -2.1816 2.1338 33 1 -0.6803 -4.5163 1.0217 34 1 0.3003 -4.4165 2.5108 35 1 0.2162 -6.1284 3.0839 36 1 -0.0402 -7.8899 3.0804 37 1 2.3674 -5.1970 3.5315 38 1 4.6390 -5.5264 4.4210 39 1 5.5460 -7.8017 4.6713 40 1 1.9012 -9.4184 3.1463 41 1 -0.9640 -6.0389 0.1194 42 1 -1.5364 -7.4028 1.1746 43 1 -0.9441 -8.7907 -0.7566 44 1 0.2630 -7.5697 -1.3489 45 1 0.3983 -9.2870 1.2330 46 1 1.7789 -8.7105 0.2022 47 1 3.0353 -3.4412 0.8417 48 1 2.6135 -4.0044 -0.8045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:03 Heat of formation + Delta-G solvation = -85.429060 kcal Electronic energy + Delta-G solvation = -32132.071075 eV Core-core repulsion = 27873.766757 eV Total energy + Delta-G solvation = -4258.304318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.91931 -40.85719 -38.88021 -38.02724 -36.63730 -34.31746 -32.87381 -32.27074 -30.60555 -29.85926 -28.69372 -27.99292 -25.73727 -25.33767 -24.03697 -22.86109 -22.47656 -21.31952 -20.55561 -19.65854 -18.20951 -17.42648 -17.08897 -16.39636 -16.22336 -15.96618 -15.75451 -15.54102 -15.37314 -14.96069 -14.72030 -14.44748 -14.09966 -13.85540 -13.69166 -13.47597 -13.14408 -12.99918 -12.63785 -12.39146 -12.31395 -12.13882 -11.98189 -11.81563 -11.75565 -11.45409 -11.35572 -11.28037 -11.16714 -10.93934 -10.80654 -10.59804 -10.45885 -10.34556 -10.17162 -10.01230 -9.45723 -9.25009 -8.95538 -8.70306 -8.65266 -8.26224 -7.98459 -6.31382 -4.38419 1.13705 1.19137 3.05905 3.16440 3.26001 3.30093 3.48277 3.56858 4.17175 4.24680 4.35924 4.50657 4.71766 4.74679 4.79266 4.87628 4.95110 5.02277 5.08411 5.19264 5.25510 5.41346 5.48668 5.50598 5.60114 5.65033 5.70515 5.73424 5.79857 5.87197 5.95266 6.02746 6.04705 6.06404 6.15442 6.20055 6.26693 6.33102 6.38328 6.43663 6.48985 6.63097 6.83920 6.87921 6.93912 7.22156 7.28802 7.70296 8.01269 8.14256 8.63081 8.67832 9.26887 9.35751 10.76459 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.003469 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.969842 B = 8068.711669 C = 9332.200050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.249 3.751 10 O -0.580 6.580 11 C -0.137 4.137 12 C 0.094 3.906 13 N -0.602 5.602 14 C 0.552 3.448 15 O -0.547 6.547 16 C -0.095 4.095 17 C -0.066 4.066 18 C -0.049 4.049 19 C -0.118 4.118 20 C -0.085 4.085 21 C -0.159 4.159 22 C 0.095 3.905 23 F -0.144 7.144 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.141 4.141 27 C -0.118 4.118 28 C 0.121 3.879 29 H 0.266 0.734 30 H 0.378 0.622 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -13.683 8.688 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.209 3.791 10 O -0.388 6.388 11 C -0.176 4.176 12 C -0.028 4.028 13 N -0.334 5.334 14 C 0.339 3.661 15 O -0.425 6.425 16 C -0.098 4.098 17 C -0.104 4.104 18 C -0.049 4.049 19 C -0.136 4.136 20 C -0.103 4.103 21 C -0.178 4.178 22 C 0.076 3.924 23 F -0.123 7.123 24 C -0.163 4.163 25 C -0.167 4.167 26 C -0.178 4.178 27 C -0.155 4.155 28 C 0.000 4.000 29 H 0.076 0.924 30 H 0.227 0.773 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.116 -14.359 8.270 16.607 hybrid contribution 0.105 1.278 0.241 1.305 sum -1.011 -13.081 8.511 15.638 Atomic orbital electron populations 1.69727 1.05964 1.27453 1.50184 1.24953 0.94980 0.99431 0.93450 0.86398 0.80226 0.82866 0.77698 1.19602 1.20795 1.20861 1.21462 0.93681 0.90194 1.51809 0.91793 1.19644 0.87067 0.90574 0.81808 1.86166 1.45259 1.64092 1.43322 1.23203 1.03117 0.90000 1.01269 1.22368 0.89056 0.96607 0.94810 1.48492 1.27176 1.04723 1.53003 1.19311 0.86114 0.81405 0.79243 1.90653 1.27849 1.78641 1.45381 1.21956 0.96603 0.96800 0.94460 1.20654 0.93077 1.03881 0.92753 1.19625 0.96379 0.92270 0.96666 1.21193 0.94540 0.98994 0.98869 1.20995 0.95417 0.96351 0.97586 1.21097 1.00666 0.92059 1.03931 1.17651 0.93398 0.79310 1.02033 1.91477 1.87768 1.39198 1.93828 1.20922 0.94691 0.98131 1.02550 1.23094 0.94627 1.01025 0.97963 1.22814 0.98751 0.98827 0.97416 1.22898 1.01139 0.94041 0.97454 1.22404 0.93763 0.86114 0.97745 0.92367 0.77295 0.89581 0.91384 0.92004 0.92941 0.89589 0.89660 0.85361 0.85021 0.85065 0.85023 0.90085 0.89243 0.91220 0.90013 0.89762 0.90026 0.91215 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.24 10.85 55.43 0.60 -21.64 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.53 -13.47 8.27 -34.44 -0.28 -13.76 16 8 H 0.06 1.63 7.79 -52.48 -0.41 1.22 16 9 C 0.25 5.72 0.86 -89.51 -0.08 5.64 16 10 O -0.58 -14.12 13.16 -35.23 -0.46 -14.59 16 11 C -0.14 -2.74 5.35 -24.90 -0.13 -2.87 16 12 C 0.09 1.55 5.78 -3.07 -0.02 1.53 16 13 N -0.60 -11.06 3.32 -170.39 -0.57 -11.63 16 14 C 0.55 9.86 5.28 -10.99 -0.06 9.81 16 15 O -0.55 -11.80 16.29 5.55 0.09 -11.71 16 16 C -0.10 -1.27 0.39 -154.75 -0.06 -1.33 16 17 C -0.07 -0.74 4.67 -27.88 -0.13 -0.88 16 18 C -0.05 -0.62 4.52 -104.64 -0.47 -1.10 16 19 C -0.12 -1.56 9.14 -39.57 -0.36 -1.92 16 20 C -0.09 -1.05 10.04 -39.59 -0.40 -1.45 16 21 C -0.16 -1.93 10.03 -39.52 -0.40 -2.32 16 22 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 23 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 24 C -0.14 -1.79 9.34 -39.51 -0.37 -2.16 16 25 C -0.13 -1.53 6.61 -25.92 -0.17 -1.70 16 26 C -0.14 -1.71 7.80 -25.92 -0.20 -1.91 16 27 C -0.12 -1.45 6.71 -25.83 -0.17 -1.63 16 28 C 0.12 2.61 6.08 -2.42 -0.01 2.59 16 29 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 30 H 0.38 9.09 7.65 45.56 0.35 9.44 16 31 H 0.09 1.80 7.50 -51.93 -0.39 1.41 16 32 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 33 H 0.06 0.96 5.86 -51.93 -0.30 0.65 16 34 H 0.05 0.73 6.22 -51.93 -0.32 0.41 16 35 H 0.09 0.93 5.67 -51.93 -0.29 0.64 16 36 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.08 1.10 6.06 -51.92 -0.31 0.79 16 42 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 46 H 0.08 1.20 7.36 -51.93 -0.38 0.82 16 47 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 48 H 0.07 1.58 8.08 -51.93 -0.42 1.17 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -28.46 384.50 -9.48 -37.94 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.25 Total: 13.65 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.70 Total: -10.73 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.04 Total: -33.26 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.37 Total: -26.30 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.46 -9.48 -37.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.490 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds