Wall clock time and date at job start Wed Apr 1 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47309 * 2 1 4 4 C 1.52998 * 109.47149 * 119.99606 * 2 1 3 5 5 C 1.50706 * 109.47348 * 300.00078 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 C 1.52996 * 109.47350 * 239.99526 * 2 1 3 14 14 N 1.46506 * 109.46955 * 59.99944 * 13 2 1 15 15 C 1.34778 * 119.99945 * 179.97438 * 14 13 2 16 16 O 1.21585 * 120.00103 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99898 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00017 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.64370 * 31.85684 * 18 17 15 20 20 C 1.55163 * 110.71568 * 268.52332 * 18 17 15 21 21 C 1.54909 * 101.57952 * 277.13475 * 20 18 17 22 22 N 1.47426 * 104.83411 * 322.99331 * 21 20 18 23 23 S 1.65600 * 125.64998 * 204.16032 * 22 21 20 24 24 C 1.81397 * 104.45204 * 269.96202 * 23 22 21 25 25 O 1.42106 * 104.27458 * 26.03453 * 23 22 21 26 26 O 1.42102 * 104.27658 * 153.88646 * 23 22 21 27 27 C 1.47024 * 108.70188 * 24.12843 * 22 21 20 28 28 H 1.09002 * 109.47144 * 300.00262 * 1 2 3 29 29 H 1.08995 * 109.46867 * 60.00304 * 1 2 3 30 30 H 1.08994 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47381 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46541 * 300.00101 * 3 2 1 33 33 H 1.09001 * 109.47046 * 59.99028 * 3 2 1 34 34 H 1.09001 * 109.47671 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47297 * 60.00006 * 4 2 1 36 36 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 37 37 H 1.09000 * 109.47441 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.47087 * 300.00409 * 13 2 1 39 39 H 0.96998 * 119.99895 * 0.02562 * 14 13 2 40 40 H 0.96998 * 119.99942 * 0.02562 * 17 15 14 41 41 H 1.08991 * 111.00870 * 35.21075 * 20 18 17 42 42 H 1.09006 * 111.00172 * 159.06715 * 20 18 17 43 43 H 1.08999 * 110.36960 * 204.15410 * 21 20 18 44 44 H 1.08996 * 110.46042 * 81.88021 * 21 20 18 45 45 H 1.08996 * 109.47084 * 59.99576 * 24 23 22 46 46 H 1.08999 * 109.47127 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.46999 * 299.99537 * 24 23 22 48 48 H 1.08998 * 109.88012 * 239.51790 * 27 22 21 49 49 H 1.08999 * 109.88062 * 118.35691 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0107 2.4798 6 1 0.9171 0.8677 2.3806 7 6 1.8703 -0.4820 3.7320 8 7 2.6264 -1.5512 3.8528 9 14 1.2482 0.3991 5.2571 10 1 1.7421 -0.3016 6.4697 11 1 1.7442 1.7989 5.2572 12 1 -0.2368 0.4002 5.2571 13 6 2.0401 -0.7213 -1.2491 14 7 1.5517 -0.0308 -2.4454 15 6 1.8778 -0.4910 -3.6695 16 8 2.5768 -1.4796 -3.7810 17 7 1.4289 0.1445 -4.7700 18 6 1.7829 -0.3560 -6.1005 19 1 1.8900 -1.4406 -6.0870 20 6 3.0808 0.3214 -6.6144 21 6 2.5313 1.6514 -7.1879 22 7 1.2355 1.2944 -7.7936 23 16 0.4745 2.1275 -9.0057 24 6 -0.5643 3.3371 -8.1406 25 8 1.5297 2.7810 -9.6978 26 8 -0.3301 1.1502 -9.6512 27 6 0.7311 0.0758 -7.1439 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7489 1.2494 36 1 2.9498 -2.0085 3.0608 37 1 3.1301 -0.7209 -1.2494 38 1 1.6767 -1.7490 -1.2491 39 1 0.9943 0.7581 -2.3564 40 1 0.8716 0.9334 -4.6810 41 1 3.7756 0.5066 -5.7953 42 1 3.5505 -0.2764 -7.3956 43 1 3.2082 2.0462 -7.9455 44 1 2.3892 2.3804 -6.3902 45 1 0.0646 3.9872 -7.5326 46 1 -1.1081 3.9369 -8.8704 47 1 -1.2735 2.8140 -7.4991 48 1 0.5992 -0.7122 -7.8854 49 1 -0.2175 0.2849 -6.6494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593405569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:46 Heat of formation + Delta-G solvation = -110.052456 kcal Electronic energy + Delta-G solvation = -29041.210344 eV Core-core repulsion = 24937.202188 eV Total energy + Delta-G solvation = -4104.008156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.37743 -38.78774 -37.60409 -37.23658 -36.43124 -34.11434 -33.76118 -32.18680 -30.51090 -29.93993 -29.08766 -26.71002 -26.63414 -26.05425 -23.15522 -22.99656 -21.64979 -20.64065 -19.45309 -19.01281 -18.30562 -17.95447 -17.27755 -16.69841 -16.50340 -16.09938 -15.53517 -15.17246 -14.78271 -14.42434 -14.24609 -14.13000 -13.90453 -13.81529 -13.70294 -13.61720 -13.47558 -13.21614 -12.84097 -12.62381 -12.52817 -12.42735 -12.18912 -12.00688 -11.79994 -11.76303 -11.56207 -11.50842 -11.25060 -11.21188 -11.06005 -10.68708 -10.28732 -10.17893 -10.12651 -10.03563 -9.57313 -9.49471 -9.33035 -8.71352 -8.50595 -8.34184 -6.35308 -4.04726 -0.30642 2.08224 2.65495 3.22455 3.35923 3.41341 3.42658 3.53569 3.61477 3.92225 4.19349 4.23676 4.25324 4.47996 4.52957 4.70159 4.77672 4.93697 5.01537 5.10639 5.29341 5.34542 5.38215 5.43896 5.51673 5.52300 5.60013 5.64154 5.67331 5.81612 6.04853 6.07430 6.13904 6.27736 6.33949 6.46106 6.51129 6.66340 6.86823 6.94499 6.94843 6.99981 7.31772 7.46499 8.03112 8.18854 8.44678 8.64222 8.87605 9.66232 11.04564 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.001871 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.242395 B =14962.648286 C =15461.697567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.125 4.125 4 C 0.023 3.977 5 C -0.592 4.592 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.147 3.853 14 N -0.736 5.736 15 C 0.701 3.299 16 O -0.591 6.591 17 N -0.744 5.744 18 C 0.156 3.844 19 H 0.112 0.888 20 C -0.139 4.139 21 C 0.114 3.886 22 N -1.015 6.015 23 S 2.629 3.371 24 C -0.674 4.674 25 O -0.952 6.952 26 O -0.952 6.952 27 C 0.113 3.887 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.269 0.731 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.394 0.606 40 H 0.394 0.606 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.090 0.910 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 10.194 -24.896 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.066 4.066 3 C -0.182 4.182 4 C -0.015 4.015 5 C -0.630 4.630 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.216 1.216 13 C 0.023 3.977 14 N -0.391 5.391 15 C 0.401 3.599 16 O -0.468 6.468 17 N -0.400 5.400 18 C 0.049 3.951 19 H 0.130 0.870 20 C -0.180 4.180 21 C -0.011 4.011 22 N -0.854 5.854 23 S 2.723 3.277 24 C -0.824 4.824 25 O -0.943 6.943 26 O -0.942 6.942 27 C -0.013 4.013 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.228 0.772 40 H 0.227 0.773 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.147 0.853 48 H 0.109 0.891 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.211 9.129 -24.298 26.474 hybrid contribution -0.893 1.226 -0.928 1.778 sum -6.104 10.355 -25.226 27.943 Atomic orbital electron populations 1.21741 0.95113 1.01141 1.00254 1.20763 0.95563 0.95826 0.94423 1.21742 1.00448 0.95784 1.00247 1.19215 0.95701 0.95198 0.91368 1.21958 1.34918 1.14354 0.91763 0.92921 1.25786 0.95336 0.96578 1.01388 1.70775 1.32408 1.18233 1.33542 0.83581 0.75825 0.75286 0.75847 1.20885 1.21562 1.21567 1.21493 0.98606 0.95628 0.81972 1.45362 1.56085 1.33129 1.04557 1.15994 0.80441 0.82922 0.80526 1.90931 1.42551 1.27459 1.85905 1.45132 1.57310 1.33113 1.04482 1.21708 0.92939 1.00296 0.80176 0.87009 1.23216 0.97649 0.95681 1.01438 1.22112 0.83447 0.97919 0.97576 1.58696 1.31800 1.38182 1.56730 1.04387 0.74798 0.75152 0.73406 1.30586 1.17031 1.18951 1.15825 1.93616 1.53547 1.77272 1.69818 1.93619 1.71376 1.57446 1.71797 1.22064 0.96854 0.87064 0.95312 0.91356 0.95234 0.93450 0.93464 0.95252 0.91355 0.97267 0.97263 0.92045 0.92063 0.92052 0.77164 0.77277 0.89191 0.89454 0.89503 0.91512 0.85308 0.85348 0.85329 0.89141 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 2 C -0.07 -1.18 0.54 -154.51 -0.08 -1.26 16 3 C -0.12 -2.09 8.05 37.16 0.30 -1.79 16 4 C 0.02 0.54 3.35 -27.88 -0.09 0.44 16 5 C -0.59 -15.50 7.65 -34.44 -0.26 -15.76 16 6 H 0.05 1.34 5.68 -52.48 -0.30 1.04 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.91 -27.31 13.65 55.43 0.76 -26.55 16 9 Si 1.07 24.45 29.90 -169.99 -5.08 19.37 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.15 2.45 4.56 -4.04 -0.02 2.43 16 14 N -0.74 -9.61 4.96 -65.22 -0.32 -9.93 16 15 C 0.70 9.32 8.57 -86.92 -0.74 8.58 16 16 O -0.59 -10.44 15.99 5.29 0.08 -10.35 16 17 N -0.74 -6.35 5.10 -56.89 -0.29 -6.64 16 18 C 0.16 1.21 3.33 -66.10 -0.22 0.99 16 19 H 0.11 1.04 7.55 -51.93 -0.39 0.65 16 20 C -0.14 -1.00 6.77 -24.58 -0.17 -1.16 16 21 C 0.11 0.67 7.05 -2.53 -0.02 0.65 16 22 N -1.02 -5.95 3.62 -111.42 -0.40 -6.36 16 23 S 2.63 16.74 6.29 -107.50 -0.68 16.07 16 24 C -0.67 -1.96 10.99 101.05 1.11 -0.85 16 25 O -0.95 -9.31 17.28 -57.54 -0.99 -10.30 16 26 O -0.95 -9.32 17.60 -57.54 -1.01 -10.33 16 27 C 0.11 0.67 6.54 -3.07 -0.02 0.65 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 34 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 35 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 36 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.39 4.19 6.18 -40.82 -0.25 3.94 16 40 H 0.39 2.28 8.63 -40.82 -0.35 1.93 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.53 7.67 -51.93 -0.40 0.13 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.13 0.26 8.14 -51.92 -0.42 -0.17 16 47 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.31 8.00 -51.93 -0.42 -0.10 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -36.69 400.09 -10.01 -46.70 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.08 Total: 0.94 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.02 Total: -8.63 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.26 Total: -49.49 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.92 Total: -30.99 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Atomic # 16 Polarization: 16.74 SS G_CDS: -0.68 Total: 16.07 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.69 -10.01 -46.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593405569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.351 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds