Wall clock time and date at job start Wed Apr 1 2020 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47309 * 2 1 4 4 C 1.52998 * 109.47149 * 119.99606 * 2 1 3 5 5 C 1.50706 * 109.47348 * 300.00078 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 C 1.52996 * 109.47350 * 239.99526 * 2 1 3 14 14 N 1.46506 * 109.46955 * 59.99944 * 13 2 1 15 15 C 1.34778 * 119.99945 * 179.97438 * 14 13 2 16 16 O 1.21585 * 120.00103 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99898 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00017 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.64370 * 31.85684 * 18 17 15 20 20 C 1.55163 * 110.71568 * 268.52332 * 18 17 15 21 21 C 1.54909 * 101.57952 * 277.13475 * 20 18 17 22 22 N 1.47426 * 104.83411 * 322.99331 * 21 20 18 23 23 S 1.65600 * 125.64998 * 204.16032 * 22 21 20 24 24 C 1.81397 * 104.45204 * 269.96202 * 23 22 21 25 25 O 1.42106 * 104.27458 * 26.03453 * 23 22 21 26 26 O 1.42102 * 104.27658 * 153.88646 * 23 22 21 27 27 C 1.47024 * 108.70188 * 24.12843 * 22 21 20 28 28 H 1.09002 * 109.47144 * 300.00262 * 1 2 3 29 29 H 1.08995 * 109.46867 * 60.00304 * 1 2 3 30 30 H 1.08994 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47381 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46541 * 300.00101 * 3 2 1 33 33 H 1.09001 * 109.47046 * 59.99028 * 3 2 1 34 34 H 1.09001 * 109.47671 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47297 * 60.00006 * 4 2 1 36 36 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 37 37 H 1.09000 * 109.47441 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.47087 * 300.00409 * 13 2 1 39 39 H 0.96998 * 119.99895 * 0.02562 * 14 13 2 40 40 H 0.96998 * 119.99942 * 0.02562 * 17 15 14 41 41 H 1.08991 * 111.00870 * 35.21075 * 20 18 17 42 42 H 1.09006 * 111.00172 * 159.06715 * 20 18 17 43 43 H 1.08999 * 110.36960 * 204.15410 * 21 20 18 44 44 H 1.08996 * 110.46042 * 81.88021 * 21 20 18 45 45 H 1.08996 * 109.47084 * 59.99576 * 24 23 22 46 46 H 1.08999 * 109.47127 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.46999 * 299.99537 * 24 23 22 48 48 H 1.08998 * 109.88012 * 239.51790 * 27 22 21 49 49 H 1.08999 * 109.88062 * 118.35691 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0107 2.4798 6 1 0.9171 0.8677 2.3806 7 6 1.8703 -0.4820 3.7320 8 7 2.6264 -1.5512 3.8528 9 14 1.2482 0.3991 5.2571 10 1 1.7421 -0.3016 6.4697 11 1 1.7442 1.7989 5.2572 12 1 -0.2368 0.4002 5.2571 13 6 2.0401 -0.7213 -1.2491 14 7 1.5517 -0.0308 -2.4454 15 6 1.8778 -0.4910 -3.6695 16 8 2.5768 -1.4796 -3.7810 17 7 1.4289 0.1445 -4.7700 18 6 1.7829 -0.3560 -6.1005 19 1 1.8900 -1.4406 -6.0870 20 6 3.0808 0.3214 -6.6144 21 6 2.5313 1.6514 -7.1879 22 7 1.2355 1.2944 -7.7936 23 16 0.4745 2.1275 -9.0057 24 6 -0.5643 3.3371 -8.1406 25 8 1.5297 2.7810 -9.6978 26 8 -0.3301 1.1502 -9.6512 27 6 0.7311 0.0758 -7.1439 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7489 1.2494 36 1 2.9498 -2.0085 3.0608 37 1 3.1301 -0.7209 -1.2494 38 1 1.6767 -1.7490 -1.2491 39 1 0.9943 0.7581 -2.3564 40 1 0.8716 0.9334 -4.6810 41 1 3.7756 0.5066 -5.7953 42 1 3.5505 -0.2764 -7.3956 43 1 3.2082 2.0462 -7.9455 44 1 2.3892 2.3804 -6.3902 45 1 0.0646 3.9872 -7.5326 46 1 -1.1081 3.9369 -8.8704 47 1 -1.2735 2.8140 -7.4991 48 1 0.5992 -0.7122 -7.8854 49 1 -0.2175 0.2849 -6.6494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593405569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:45 Heat of formation + Delta-G solvation = -139.421151 kcal Electronic energy + Delta-G solvation = -29042.483866 eV Core-core repulsion = 24937.202188 eV Total energy + Delta-G solvation = -4105.281678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34613 -39.64756 -38.58354 -38.20377 -37.03303 -35.41732 -34.96999 -33.81890 -31.10368 -30.22052 -29.72828 -28.57826 -28.01049 -27.39420 -24.90056 -23.63433 -22.59694 -21.52629 -20.34345 -19.94201 -19.35337 -18.72250 -18.42217 -17.91603 -17.27673 -16.74301 -16.60244 -16.13673 -16.09149 -15.59065 -15.37597 -15.14120 -15.09110 -14.85190 -14.51271 -14.25058 -14.05571 -13.92184 -13.90540 -13.70816 -13.64536 -13.24259 -13.14269 -13.02212 -12.84142 -12.77827 -12.68965 -12.57438 -12.34619 -12.34115 -12.11339 -11.96033 -11.94685 -11.82681 -11.59643 -11.39277 -11.16022 -10.47913 -10.46764 -10.36489 -9.99053 -9.75573 -8.56986 -6.26162 -0.75033 1.55977 1.61201 1.64323 1.70520 1.81860 2.17090 2.62772 2.94894 3.05203 3.25861 3.32855 3.40195 3.74554 3.92083 4.03417 4.05447 4.09362 4.14958 4.22978 4.33322 4.40662 4.54191 4.61193 4.67925 4.71749 4.81464 4.84603 4.92618 4.95604 4.99094 5.02652 5.05737 5.08066 5.14525 5.29864 5.32060 5.36049 5.36882 5.50173 5.55065 5.58964 5.69077 6.02177 6.12995 6.30120 6.67751 7.14306 7.54557 7.62102 8.82918 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.001871 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.242395 B =14962.648286 C =15461.697567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.057 4.057 3 C -0.119 4.119 4 C 0.022 3.978 5 C -0.587 4.587 6 H 0.066 0.934 7 C -0.048 4.048 8 N -0.948 5.948 9 Si 1.114 2.886 10 H -0.293 1.293 11 H -0.268 1.268 12 H -0.268 1.268 13 C 0.163 3.837 14 N -0.724 5.724 15 C 0.701 3.299 16 O -0.638 6.638 17 N -0.719 5.719 18 C 0.154 3.846 19 H 0.092 0.908 20 C -0.140 4.140 21 C 0.117 3.883 22 N -1.016 6.016 23 S 2.633 3.367 24 C -0.650 4.650 25 O -0.994 6.994 26 O -0.993 6.993 27 C 0.117 3.883 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.053 0.947 34 H -0.019 1.019 35 H -0.019 1.019 36 H 0.252 0.748 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.410 0.590 40 H 0.413 0.587 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.150 0.850 48 H 0.086 0.914 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 13.538 -25.613 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.058 4.058 3 C -0.176 4.176 4 C -0.015 4.015 5 C -0.625 4.625 6 H 0.084 0.916 7 C -0.245 4.245 8 N -0.586 5.586 9 Si 0.936 3.064 10 H -0.219 1.219 11 H -0.193 1.193 12 H -0.193 1.193 13 C 0.038 3.962 14 N -0.380 5.380 15 C 0.401 3.599 16 O -0.519 6.519 17 N -0.376 5.376 18 C 0.047 3.953 19 H 0.110 0.890 20 C -0.180 4.180 21 C -0.008 4.008 22 N -0.854 5.854 23 S 2.732 3.268 24 C -0.804 4.804 25 O -0.985 6.985 26 O -0.984 6.984 27 C -0.009 4.009 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.072 0.928 34 H -0.001 1.001 35 H -0.001 1.001 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.168 0.832 48 H 0.104 0.896 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.734 12.510 -25.092 29.085 hybrid contribution -0.118 0.192 -0.781 0.812 sum -7.851 12.702 -25.873 29.873 Atomic orbital electron populations 1.21675 0.93417 1.00853 1.01747 1.20582 0.96780 0.96269 0.92166 1.21674 0.99731 0.94504 1.01740 1.19162 0.93919 0.94335 0.94107 1.22352 1.33652 1.14152 0.92296 0.91621 1.27331 0.95103 0.96605 1.05412 1.70916 1.34922 1.20096 1.32689 0.82968 0.76518 0.75027 0.71880 1.21941 1.19292 1.19313 1.20998 0.97351 0.94868 0.83019 1.44968 1.56256 1.33367 1.03424 1.16114 0.80042 0.82518 0.81239 1.90913 1.44687 1.29763 1.86575 1.44867 1.56380 1.32994 1.03354 1.21728 0.94159 0.99389 0.80065 0.88971 1.23168 0.97170 0.96632 1.01030 1.22135 0.83320 0.97336 0.98014 1.58512 1.32000 1.38462 1.56422 1.04021 0.74333 0.75129 0.73349 1.30368 1.16511 1.17512 1.16030 1.93562 1.55580 1.77758 1.71562 1.93566 1.71871 1.59534 1.73443 1.22032 0.97103 0.87105 0.94627 0.92807 0.90685 0.94695 0.94677 0.90691 0.92814 1.00082 1.00101 0.93833 0.94009 0.94040 0.75183 0.74950 0.90432 0.89652 0.89992 0.89211 0.83303 0.83890 0.83198 0.89563 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 8.05 71.98 0.58 -3.17 16 2 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 3 C -0.12 -3.73 8.05 71.98 0.58 -3.15 16 4 C 0.02 1.10 3.35 29.85 0.10 1.20 16 5 C -0.59 -30.92 7.65 25.60 0.20 -30.72 16 6 H 0.07 3.25 5.68 -2.91 -0.02 3.23 16 7 C -0.05 -2.71 5.46 84.65 0.46 -2.25 16 8 N -0.95 -58.67 13.65 21.45 0.29 -58.38 16 9 Si 1.11 48.78 29.90 68.60 2.05 50.83 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 C 0.16 5.43 4.56 86.38 0.39 5.82 16 14 N -0.72 -17.18 4.96 -478.53 -2.37 -19.55 16 15 C 0.70 17.52 8.57 179.05 1.53 19.05 16 16 O -0.64 -22.69 15.99 -3.99 -0.06 -22.75 16 17 N -0.72 -10.31 5.10 -452.15 -2.31 -12.62 16 18 C 0.15 2.16 3.33 46.18 0.15 2.31 16 19 H 0.09 1.72 7.55 -2.39 -0.02 1.70 16 20 C -0.14 -1.87 6.77 31.99 0.22 -1.66 16 21 C 0.12 1.12 7.05 86.85 0.61 1.74 16 22 N -1.02 -9.63 3.62 -506.44 -1.83 -11.46 16 23 S 2.63 28.61 6.29 -56.49 -0.36 28.25 16 24 C -0.65 -0.84 10.99 113.37 1.25 0.41 16 25 O -0.99 -18.61 17.28 -127.65 -2.21 -20.82 16 26 O -0.99 -18.47 17.60 -127.65 -2.25 -20.72 16 27 C 0.12 1.12 6.54 86.73 0.57 1.69 16 28 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 29 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.65 6.86 -2.38 -0.02 1.63 16 33 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 34 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 35 H -0.02 -1.05 8.01 -2.38 -0.02 -1.07 16 36 H 0.25 15.96 7.22 -92.71 -0.67 15.29 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 6.87 6.18 -92.71 -0.57 6.30 16 40 H 0.41 2.87 8.63 -92.71 -0.80 2.07 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.08 0.90 7.67 -2.39 -0.02 0.88 16 44 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.15 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 0.45 8.00 -2.39 -0.02 0.44 16 Total: -1.00 -84.74 400.09 -2.74 -87.48 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.31 Total: 10.53 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 6.61 Total: -10.79 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -6.22 Total: -102.01 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -4.52 Total: -64.29 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Atomic # 16 Polarization: 28.61 SS G_CDS: -0.36 Total: 28.25 kcal Total: -84.74 -2.74 -87.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593405569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.940 kcal (2) G-P(sol) polarization free energy of solvation -84.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds