Wall clock time and date at job start Wed Apr 1 2020 04:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99911 * 2 1 4 4 C 1.52997 * 109.46967 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47737 * 64.99821 * 4 3 2 6 6 C 1.46507 * 119.99643 * 270.00160 * 5 4 3 7 7 C 1.50696 * 109.46908 * 269.99356 * 6 5 4 8 8 H 1.07998 * 119.99954 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99704 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99473 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99992 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47134 * 89.99757 * 11 9 7 13 13 H 1.48498 * 109.46854 * 209.99668 * 11 9 7 14 14 H 1.48501 * 109.46983 * 329.99536 * 11 9 7 15 15 C 1.34771 * 120.00382 * 89.99329 * 5 4 3 16 16 O 1.21582 * 119.99684 * 0.02562 * 15 5 4 17 17 N 1.34771 * 120.00315 * 180.02562 * 15 5 4 18 18 C 1.39431 * 120.00218 * 185.30913 * 17 15 5 19 19 C 1.39160 * 119.86163 * 213.83581 * 18 17 15 20 20 C 1.37778 * 120.11073 * 180.30250 * 19 18 17 21 21 C 1.39434 * 119.67095 * 359.72160 * 20 19 18 22 22 C 1.39902 * 120.13501 * 359.95876 * 21 20 19 23 23 C 1.37473 * 119.91622 * 0.06024 * 22 21 20 24 24 C 1.50571 * 119.19422 * 180.11402 * 22 21 20 25 25 C 1.52695 * 109.89757 * 325.95656 * 24 22 21 26 26 N 1.46033 * 111.03355 * 51.12855 * 25 24 22 27 27 C 1.34795 * 121.21378 * 322.29221 * 26 25 24 28 28 O 1.21589 * 120.42756 * 182.74147 * 27 26 25 29 29 H 1.08995 * 109.46787 * 60.00392 * 1 2 3 30 30 H 1.09002 * 109.47040 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47357 * 300.00195 * 1 2 3 32 32 H 1.08996 * 109.47582 * 59.99738 * 3 2 1 33 33 H 1.08999 * 109.46664 * 299.99415 * 3 2 1 34 34 H 1.09006 * 109.47282 * 304.99318 * 4 3 2 35 35 H 1.08999 * 109.47037 * 185.00052 * 4 3 2 36 36 H 1.09004 * 109.47184 * 29.99684 * 6 5 4 37 37 H 1.09000 * 109.47036 * 149.99724 * 6 5 4 38 38 H 0.96999 * 119.99382 * 180.02562 * 10 9 7 39 39 H 0.97004 * 119.99959 * 5.30756 * 17 15 5 40 40 H 1.08004 * 119.94080 * 0.02584 * 19 18 17 41 41 H 1.07999 * 120.16181 * 179.70585 * 20 19 18 42 42 H 1.08007 * 120.05820 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.40160 * 86.08719 * 24 22 21 44 44 H 1.08996 * 109.40364 * 205.82695 * 24 22 21 45 45 H 1.09000 * 109.17058 * 290.72541 * 25 24 22 46 46 H 1.09006 * 109.12658 * 171.49879 * 25 24 22 47 47 H 0.97009 * 119.39534 * 142.31889 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1053 -0.8922 -1.3426 7 6 5.5010 -1.2978 -0.9447 8 1 6.2196 -0.5459 -0.6536 9 6 5.8604 -2.6290 -0.9514 10 7 7.0783 -2.9830 -0.6036 11 14 4.6173 -3.9294 -1.4542 12 1 4.7025 -4.1554 -2.9194 13 1 4.9113 -5.1977 -0.7398 14 1 3.2498 -3.4690 -1.1031 15 6 4.2615 1.3336 -2.3218 16 8 4.1543 2.5423 -2.2470 17 7 4.6661 0.7629 -3.4737 18 6 5.0677 1.5614 -4.5439 19 6 4.8160 1.1488 -5.8489 20 6 5.2161 1.9307 -6.9104 21 6 5.8686 3.1393 -6.6700 22 6 6.1148 3.5556 -5.3572 23 6 5.7135 2.7707 -4.3024 24 6 6.8187 4.8657 -5.1220 25 6 7.8416 5.1121 -6.2286 26 7 7.2347 4.9556 -7.5476 27 6 6.3129 4.0009 -7.7836 28 8 5.8533 3.8510 -8.8993 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 3.3853 -1.3630 -0.6732 37 1 3.9121 -1.2116 -2.3666 38 1 7.3312 -3.9194 -0.6087 39 1 4.6780 -0.2034 -3.5583 40 1 4.3102 0.2118 -6.0300 41 1 5.0255 1.6091 -7.9236 42 1 5.9027 3.0897 -3.2880 43 1 6.0875 5.6741 -5.1183 44 1 7.3278 4.8354 -4.1587 45 1 8.6601 4.3999 -6.1245 46 1 8.2341 6.1245 -6.1332 47 1 7.5001 5.5494 -8.2673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596972068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:18 Heat of formation + Delta-G solvation = -73.546968 kcal Electronic energy + Delta-G solvation = -30806.301655 eV Core-core repulsion = 26568.432545 eV Total energy + Delta-G solvation = -4237.869110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80659 -39.97070 -38.20198 -37.49618 -36.27020 -35.18268 -34.35417 -32.63700 -32.03506 -30.45670 -29.22532 -29.04890 -27.63417 -26.08479 -24.26153 -23.92731 -22.63135 -22.32909 -21.72363 -19.75560 -19.21465 -17.88658 -17.23936 -17.16478 -17.10166 -16.68059 -16.10410 -15.88912 -15.56272 -15.21100 -15.00576 -14.76985 -14.30647 -14.27601 -14.19925 -13.93154 -13.64847 -13.27350 -13.11851 -12.90310 -12.65242 -12.59482 -12.34477 -12.28461 -11.90446 -11.82778 -11.63255 -11.57200 -11.10986 -11.03269 -10.91062 -10.65511 -10.31132 -10.12369 -9.93373 -9.72135 -9.61752 -9.45331 -9.25659 -8.76761 -8.69080 -8.08418 -7.67049 -6.25792 -4.28285 0.93690 1.50154 2.80300 3.07473 3.14564 3.15771 3.25458 3.27334 3.57699 3.97529 4.03941 4.23546 4.32001 4.50302 4.59024 4.68046 4.99671 5.04397 5.05307 5.18056 5.25994 5.34388 5.35261 5.46622 5.50106 5.52625 5.57264 5.58563 5.70239 5.71009 5.80087 5.89379 6.10017 6.22302 6.23839 6.33639 6.43398 6.46706 6.65714 6.71316 6.75876 7.05978 7.08852 7.20200 7.29849 7.38954 7.52866 8.16214 8.17588 8.42906 8.79217 8.98183 9.33325 10.86608 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003128 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.852116 B = 8948.305199 C =10071.570548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.045 3.955 4 C 0.139 3.861 5 N -0.594 5.594 6 C 0.212 3.788 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.889 5.889 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.260 1.260 15 C 0.709 3.291 16 O -0.600 6.600 17 N -0.680 5.680 18 C 0.223 3.777 19 C -0.172 4.172 20 C -0.030 4.030 21 C -0.178 4.178 22 C -0.030 4.030 23 C -0.129 4.129 24 C -0.100 4.100 25 C 0.116 3.884 26 N -0.730 5.730 27 C 0.573 3.427 28 O -0.546 6.546 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.267 0.733 39 H 0.418 0.582 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 12.213 -5.433 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.033 4.033 4 C 0.015 3.985 5 N -0.326 5.326 6 C 0.091 3.909 7 C -0.584 4.584 8 H 0.096 0.904 9 C -0.126 4.126 10 N -0.526 5.526 11 Si 0.694 3.306 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.184 1.184 15 C 0.412 3.588 16 O -0.481 6.481 17 N -0.327 5.327 18 C 0.124 3.876 19 C -0.193 4.193 20 C -0.049 4.049 21 C -0.182 4.182 22 C -0.032 4.032 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.009 4.009 26 N -0.383 5.383 27 C 0.362 3.638 28 O -0.425 6.425 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.258 0.742 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.545 12.447 -5.611 14.390 hybrid contribution -0.619 -1.017 -0.341 1.239 sum -5.164 11.430 -5.952 13.883 Atomic orbital electron populations 1.22686 0.82032 1.02344 0.99397 1.88008 1.18808 1.27778 1.95273 1.23100 0.95317 0.84794 1.00079 1.21296 0.90790 0.99791 0.86591 1.47044 1.67462 1.08336 1.09748 1.19801 0.98631 0.75618 0.96832 1.21407 0.95838 0.93776 1.47330 0.90367 1.24867 0.95067 0.98287 0.94391 1.69890 1.18119 1.17575 1.47004 0.86971 0.82614 0.81838 0.79205 1.19942 1.20829 1.18406 1.15777 0.77789 0.84958 0.80299 1.90837 1.61407 1.12268 1.83541 1.42850 1.67324 1.10739 1.11740 1.17784 0.91701 0.91430 0.86678 1.20862 1.05341 1.02479 0.90625 1.20803 0.93224 0.91847 0.99066 1.19491 1.08158 0.98167 0.92413 1.19724 0.96134 0.95467 0.91859 1.20954 0.99406 0.94665 0.99975 1.20814 0.98326 0.94989 0.99623 1.21298 0.95389 1.02468 0.81722 1.45700 1.43376 1.35794 1.13408 1.18246 0.78132 0.79617 0.87797 1.90785 1.56962 1.70391 1.24365 0.94569 0.89979 0.94494 0.92853 0.93204 0.88986 0.88923 0.92933 0.96667 0.92330 0.74204 0.85049 0.84727 0.83748 0.89514 0.88389 0.91365 0.89491 0.76310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.11 9.53 -35.23 -0.34 -6.44 16 3 C 0.05 0.67 6.28 37.16 0.23 0.90 16 4 C 0.14 2.35 5.81 -4.04 -0.02 2.33 16 5 N -0.59 -11.60 2.42 -180.80 -0.44 -12.04 16 6 C 0.21 4.55 3.86 -5.19 -0.02 4.53 16 7 C -0.55 -13.89 9.94 -34.44 -0.34 -14.23 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -25.31 13.96 55.43 0.77 -24.53 16 11 Si 0.87 19.40 27.47 -169.99 -4.67 14.73 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 15 C 0.71 13.90 8.00 -86.93 -0.70 13.20 16 16 O -0.60 -12.29 13.60 5.29 0.07 -12.22 16 17 N -0.68 -12.22 5.19 -14.20 -0.07 -12.29 16 18 C 0.22 3.69 6.27 -83.70 -0.53 3.16 16 19 C -0.17 -2.49 9.94 -39.41 -0.39 -2.88 16 20 C -0.03 -0.42 9.63 -39.30 -0.38 -0.80 16 21 C -0.18 -2.57 5.78 -104.99 -0.61 -3.17 16 22 C -0.03 -0.41 5.68 -104.34 -0.59 -1.01 16 23 C -0.13 -2.06 8.30 -39.50 -0.33 -2.39 16 24 C -0.10 -0.98 6.04 -28.10 -0.17 -1.15 16 25 C 0.12 0.91 7.04 -4.45 -0.03 0.88 16 26 N -0.73 -7.41 5.58 -61.79 -0.34 -7.75 16 27 C 0.57 8.09 7.78 -12.41 -0.10 8.00 16 28 O -0.55 -9.36 17.45 5.29 0.09 -9.27 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 35 H 0.09 1.49 7.42 -51.93 -0.39 1.10 16 36 H 0.05 1.17 6.17 -51.93 -0.32 0.85 16 37 H 0.02 0.32 5.72 -51.93 -0.30 0.02 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.42 7.39 6.51 -40.82 -0.27 7.13 16 40 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.13 1.76 7.84 -52.49 -0.41 1.35 16 42 H 0.14 2.47 6.41 -52.48 -0.34 2.14 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.40 3.28 8.92 -40.82 -0.36 2.91 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -32.91 387.48 -8.65 -41.56 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.61 Total: 11.58 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -2.95 Total: 10.82 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.08 Total: -56.61 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.17 Total: -27.93 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.67 Total: 14.73 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.91 -8.65 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596972068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.984 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds