Wall clock time and date at job start Wed Apr 1 2020 04:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99911 * 2 1 4 4 C 1.52997 * 109.46967 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47737 * 64.99821 * 4 3 2 6 6 C 1.46507 * 119.99643 * 270.00160 * 5 4 3 7 7 C 1.50696 * 109.46908 * 269.99356 * 6 5 4 8 8 H 1.07998 * 119.99954 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99704 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99473 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99992 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47134 * 89.99757 * 11 9 7 13 13 H 1.48498 * 109.46854 * 209.99668 * 11 9 7 14 14 H 1.48501 * 109.46983 * 329.99536 * 11 9 7 15 15 C 1.34771 * 120.00382 * 89.99329 * 5 4 3 16 16 O 1.21582 * 119.99684 * 0.02562 * 15 5 4 17 17 N 1.34771 * 120.00315 * 180.02562 * 15 5 4 18 18 C 1.39431 * 120.00218 * 185.30913 * 17 15 5 19 19 C 1.39160 * 119.86163 * 213.83581 * 18 17 15 20 20 C 1.37778 * 120.11073 * 180.30250 * 19 18 17 21 21 C 1.39434 * 119.67095 * 359.72160 * 20 19 18 22 22 C 1.39902 * 120.13501 * 359.95876 * 21 20 19 23 23 C 1.37473 * 119.91622 * 0.06024 * 22 21 20 24 24 C 1.50571 * 119.19422 * 180.11402 * 22 21 20 25 25 C 1.52695 * 109.89757 * 325.95656 * 24 22 21 26 26 N 1.46033 * 111.03355 * 51.12855 * 25 24 22 27 27 C 1.34795 * 121.21378 * 322.29221 * 26 25 24 28 28 O 1.21589 * 120.42756 * 182.74147 * 27 26 25 29 29 H 1.08995 * 109.46787 * 60.00392 * 1 2 3 30 30 H 1.09002 * 109.47040 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47357 * 300.00195 * 1 2 3 32 32 H 1.08996 * 109.47582 * 59.99738 * 3 2 1 33 33 H 1.08999 * 109.46664 * 299.99415 * 3 2 1 34 34 H 1.09006 * 109.47282 * 304.99318 * 4 3 2 35 35 H 1.08999 * 109.47037 * 185.00052 * 4 3 2 36 36 H 1.09004 * 109.47184 * 29.99684 * 6 5 4 37 37 H 1.09000 * 109.47036 * 149.99724 * 6 5 4 38 38 H 0.96999 * 119.99382 * 180.02562 * 10 9 7 39 39 H 0.97004 * 119.99959 * 5.30756 * 17 15 5 40 40 H 1.08004 * 119.94080 * 0.02584 * 19 18 17 41 41 H 1.07999 * 120.16181 * 179.70585 * 20 19 18 42 42 H 1.08007 * 120.05820 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.40160 * 86.08719 * 24 22 21 44 44 H 1.08996 * 109.40364 * 205.82695 * 24 22 21 45 45 H 1.09000 * 109.17058 * 290.72541 * 25 24 22 46 46 H 1.09006 * 109.12658 * 171.49879 * 25 24 22 47 47 H 0.97009 * 119.39534 * 142.31889 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1053 -0.8922 -1.3426 7 6 5.5010 -1.2978 -0.9447 8 1 6.2196 -0.5459 -0.6536 9 6 5.8604 -2.6290 -0.9514 10 7 7.0783 -2.9830 -0.6036 11 14 4.6173 -3.9294 -1.4542 12 1 4.7025 -4.1554 -2.9194 13 1 4.9113 -5.1977 -0.7398 14 1 3.2498 -3.4690 -1.1031 15 6 4.2615 1.3336 -2.3218 16 8 4.1543 2.5423 -2.2470 17 7 4.6661 0.7629 -3.4737 18 6 5.0677 1.5614 -4.5439 19 6 4.8160 1.1488 -5.8489 20 6 5.2161 1.9307 -6.9104 21 6 5.8686 3.1393 -6.6700 22 6 6.1148 3.5556 -5.3572 23 6 5.7135 2.7707 -4.3024 24 6 6.8187 4.8657 -5.1220 25 6 7.8416 5.1121 -6.2286 26 7 7.2347 4.9556 -7.5476 27 6 6.3129 4.0009 -7.7836 28 8 5.8533 3.8510 -8.8993 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 3.3853 -1.3630 -0.6732 37 1 3.9121 -1.2116 -2.3666 38 1 7.3312 -3.9194 -0.6087 39 1 4.6780 -0.2034 -3.5583 40 1 4.3102 0.2118 -6.0300 41 1 5.0255 1.6091 -7.9236 42 1 5.9027 3.0897 -3.2880 43 1 6.0875 5.6741 -5.1183 44 1 7.3278 4.8354 -4.1587 45 1 8.6601 4.3999 -6.1245 46 1 8.2341 6.1245 -6.1332 47 1 7.5001 5.5494 -8.2673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596972068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:17 Heat of formation + Delta-G solvation = -96.687996 kcal Electronic energy + Delta-G solvation = -30807.305126 eV Core-core repulsion = 26568.432545 eV Total energy + Delta-G solvation = -4238.872581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.03712 -41.24396 -39.40211 -38.66426 -37.28731 -36.74152 -35.64368 -34.58315 -33.07684 -31.77633 -30.60921 -30.01795 -29.22852 -27.13754 -25.39890 -24.95156 -24.41433 -23.58052 -22.82893 -21.02174 -20.45958 -19.20561 -19.09992 -18.41370 -18.20132 -17.90577 -17.27474 -17.09051 -16.75577 -16.42536 -16.20950 -16.08422 -15.84716 -15.49278 -15.45314 -15.04512 -14.91547 -14.58042 -14.39543 -14.13665 -14.00061 -13.83110 -13.58674 -13.53622 -13.25658 -13.00284 -12.76936 -12.73786 -12.55791 -12.45281 -12.11313 -12.07262 -11.94315 -11.69650 -11.45400 -11.15229 -11.00520 -10.78493 -10.58111 -10.15776 -9.80717 -9.57597 -9.03364 -8.29951 -6.37389 -0.23321 0.35379 1.38892 1.42788 1.52664 1.58244 1.73981 2.14344 2.29723 2.34555 2.81518 2.88586 2.92932 3.05062 3.57526 3.61847 3.78033 3.98559 4.14469 4.19182 4.20119 4.32843 4.34581 4.39240 4.42881 4.53273 4.54007 4.58666 4.65772 4.69783 4.83865 4.84428 4.91403 4.93418 4.99732 5.06599 5.10711 5.21775 5.32535 5.42759 5.46950 5.58671 5.87483 5.98144 5.99049 6.14015 6.21214 6.29712 6.66805 6.84608 7.17599 7.27937 7.47896 8.86006 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003128 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.852116 B = 8948.305199 C =10071.570548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.056 3.944 4 C 0.133 3.867 5 N -0.600 5.600 6 C 0.226 3.774 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.023 3.977 10 N -0.939 5.939 11 Si 0.936 3.064 12 H -0.260 1.260 13 H -0.286 1.286 14 H -0.242 1.242 15 C 0.705 3.295 16 O -0.613 6.613 17 N -0.680 5.680 18 C 0.196 3.804 19 C -0.167 4.167 20 C -0.034 4.034 21 C -0.187 4.187 22 C -0.025 4.025 23 C -0.145 4.145 24 C -0.102 4.102 25 C 0.115 3.885 26 N -0.714 5.714 27 C 0.568 3.432 28 O -0.583 6.583 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.268 0.732 39 H 0.417 0.583 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.130 0.870 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 13.029 -6.279 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.332 5.332 6 C 0.104 3.896 7 C -0.579 4.579 8 H 0.050 0.950 9 C -0.176 4.176 10 N -0.579 5.579 11 Si 0.758 3.242 12 H -0.184 1.184 13 H -0.212 1.212 14 H -0.165 1.165 15 C 0.407 3.593 16 O -0.494 6.494 17 N -0.327 5.327 18 C 0.098 3.902 19 C -0.188 4.188 20 C -0.054 4.054 21 C -0.191 4.191 22 C -0.026 4.026 23 C -0.165 4.165 24 C -0.139 4.139 25 C -0.009 4.009 26 N -0.366 5.366 27 C 0.358 3.642 28 O -0.465 6.465 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.257 0.743 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.146 0.854 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.091 0.909 46 H 0.148 0.852 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.687 13.324 -6.457 15.861 hybrid contribution -0.174 -1.140 -0.055 1.154 sum -5.862 12.184 -6.512 15.007 Atomic orbital electron populations 1.22879 0.79957 1.03444 1.00621 1.87946 1.21136 1.28305 1.95519 1.22958 0.93376 0.84776 1.01089 1.21459 0.92791 0.99510 0.85284 1.47087 1.67805 1.07635 1.10674 1.19512 0.95780 0.76910 0.97372 1.21524 0.96944 0.92888 1.46542 0.94971 1.25728 0.96885 1.00697 0.94337 1.70046 1.20577 1.18149 1.49103 0.85886 0.80549 0.78296 0.79424 1.18414 1.21215 1.16534 1.15902 0.77787 0.84895 0.80674 1.90812 1.62050 1.12684 1.83874 1.42795 1.67350 1.10761 1.11763 1.18075 0.93077 0.91984 0.87029 1.21016 1.04959 1.03129 0.89719 1.21012 0.92956 0.91936 0.99461 1.19752 1.07956 0.98407 0.92976 1.20069 0.95158 0.96565 0.90853 1.20933 1.00509 0.95241 0.99863 1.20962 0.98882 0.92914 1.01184 1.21541 0.94484 1.05221 0.79614 1.45665 1.41765 1.34375 1.14816 1.18248 0.78764 0.80215 0.87017 1.90766 1.58651 1.71655 1.25457 0.94062 0.89026 0.92509 0.89814 0.94007 0.89776 0.88632 0.92887 0.95075 0.92299 0.74330 0.83190 0.83723 0.85403 0.88567 0.87058 0.90861 0.85191 0.74879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.51 9.53 -148.98 -1.42 -13.93 16 3 C 0.06 1.57 6.28 71.98 0.45 2.03 16 4 C 0.13 4.50 5.81 86.38 0.50 5.00 16 5 N -0.60 -23.65 2.42 -844.20 -2.04 -25.70 16 6 C 0.23 9.66 3.86 85.63 0.33 9.99 16 7 C -0.54 -28.24 9.94 25.60 0.25 -27.99 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 9 C 0.02 1.22 5.47 84.66 0.46 1.68 16 10 N -0.94 -55.00 13.96 21.45 0.30 -54.70 16 11 Si 0.94 39.62 27.47 68.60 1.88 41.51 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 13 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 15 C 0.71 28.04 8.00 179.06 1.43 29.48 16 16 O -0.61 -25.48 13.60 -3.98 -0.05 -25.53 16 17 N -0.68 -24.75 5.19 -317.11 -1.65 -26.40 16 18 C 0.20 6.54 6.27 38.39 0.24 6.78 16 19 C -0.17 -4.78 9.94 22.38 0.22 -4.55 16 20 C -0.03 -0.95 9.63 22.45 0.22 -0.74 16 21 C -0.19 -5.23 5.78 -20.10 -0.12 -5.35 16 22 C -0.02 -0.66 5.68 -19.68 -0.11 -0.77 16 23 C -0.14 -4.67 8.30 22.32 0.19 -4.48 16 24 C -0.10 -1.78 6.04 29.71 0.18 -1.60 16 25 C 0.11 1.43 7.04 86.37 0.61 2.04 16 26 N -0.71 -12.73 5.58 -467.64 -2.61 -15.34 16 27 C 0.57 15.34 7.78 86.72 0.67 16.02 16 28 O -0.58 -19.60 17.45 -4.00 -0.07 -19.67 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 2.93 8.07 -2.38 -0.02 2.92 16 35 H 0.10 3.12 7.42 -2.39 -0.02 3.10 16 36 H 0.05 2.29 6.17 -2.38 -0.01 2.28 16 37 H 0.03 1.25 5.72 -2.39 -0.01 1.24 16 38 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.42 14.83 6.51 -92.71 -0.60 14.22 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.15 3.70 7.84 -2.91 -0.02 3.67 16 42 H 0.13 4.52 6.41 -2.91 -0.02 4.50 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.13 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.41 5.63 8.92 -92.70 -0.83 4.80 16 Total: -1.00 -73.63 387.48 0.66 -72.97 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.46 Total: 37.40 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: 6.78 Total: 29.38 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -6.00 Total: -122.13 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -1.54 Total: -59.13 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.88 Total: 41.51 kcal Total: -73.63 0.66 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596972068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.713 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds