Wall clock time and date at job start Wed Apr 1 2020 04:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00422 * 2 1 4 4 C 1.52999 * 109.47394 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47073 * 64.99976 * 4 3 2 6 6 C 1.46500 * 119.99998 * 270.00355 * 5 4 3 7 7 C 1.50695 * 109.46929 * 269.99683 * 6 5 4 8 8 H 1.08001 * 120.00166 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00009 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99880 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99847 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47006 * 90.00166 * 11 9 7 13 13 H 1.48494 * 109.47252 * 209.99670 * 11 9 7 14 14 H 1.48497 * 109.47445 * 329.99904 * 11 9 7 15 15 C 1.34775 * 119.99884 * 89.99892 * 5 4 3 16 16 O 1.21580 * 120.00168 * 180.02562 * 15 5 4 17 17 N 1.34785 * 119.99879 * 0.02562 * 15 5 4 18 18 C 1.39945 * 119.99664 * 184.58925 * 17 15 5 19 19 C 1.38933 * 120.03013 * 144.90543 * 18 17 15 20 20 C 1.38146 * 120.07912 * 179.97438 * 19 18 17 21 21 C 1.38163 * 120.12253 * 0.02562 * 20 19 18 22 22 C 1.38920 * 120.07499 * 359.97438 * 21 20 19 23 23 C 1.38731 * 120.03186 * 324.87819 * 18 17 15 24 24 N 1.39836 * 119.93048 * 179.97438 * 22 21 20 25 25 C 1.34560 * 120.45873 * 18.54029 * 24 22 21 26 26 O 1.21284 * 119.62096 * 180.79727 * 25 24 22 27 27 C 1.50495 * 120.76286 * 0.79045 * 25 24 22 28 28 C 1.50684 * 120.11194 * 179.97438 * 21 20 19 29 29 H 1.09008 * 109.47258 * 59.99720 * 1 2 3 30 30 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47204 * 300.00217 * 1 2 3 32 32 H 1.09007 * 109.47057 * 59.99609 * 3 2 1 33 33 H 1.08996 * 109.47191 * 300.00194 * 3 2 1 34 34 H 1.09001 * 109.46870 * 305.00516 * 4 3 2 35 35 H 1.08996 * 109.47556 * 185.00062 * 4 3 2 36 36 H 1.09004 * 109.47226 * 29.99975 * 6 5 4 37 37 H 1.08997 * 109.46853 * 149.99754 * 6 5 4 38 38 H 0.96994 * 119.99864 * 180.02562 * 10 9 7 39 39 H 0.96998 * 119.99848 * 4.58615 * 17 15 5 40 40 H 1.08010 * 119.96120 * 359.69886 * 19 18 17 41 41 H 1.08001 * 119.94163 * 180.02562 * 20 19 18 42 42 H 1.08002 * 120.07508 * 0.02562 * 23 18 17 43 43 H 0.96992 * 119.77127 * 198.53226 * 24 22 21 44 44 H 1.09000 * 109.40270 * 204.65227 * 27 25 24 45 45 H 1.09005 * 109.39862 * 84.91820 * 27 25 24 46 46 H 1.09006 * 109.45724 * 266.07588 * 28 21 20 47 47 H 1.08993 * 109.46273 * 26.05134 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3403 7 6 5.5016 -1.2984 -0.9413 8 1 6.2200 -0.5465 -0.6498 9 6 5.8609 -2.6295 -0.9473 10 7 7.0788 -2.9835 -0.5995 11 14 4.6181 -3.9300 -1.4508 12 1 4.7046 -4.1564 -2.9159 13 1 4.9114 -5.1981 -0.7359 14 1 3.2504 -3.4695 -1.1010 15 6 4.2634 1.3327 -2.3200 16 8 4.6291 0.8176 -3.3588 17 7 4.1446 2.6728 -2.2376 18 6 4.3489 3.4645 -3.3733 19 6 3.5955 4.6163 -3.5627 20 6 3.7967 5.3989 -4.6832 21 6 4.7471 5.0385 -5.6191 22 6 5.5037 3.8880 -5.4354 23 6 5.3044 3.1003 -4.3109 24 7 6.4644 3.5258 -6.3848 25 6 6.9308 4.4321 -7.2633 26 8 7.7533 4.0979 -8.0896 27 6 6.4434 5.8557 -7.2325 28 6 4.9660 5.8919 -6.8415 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8507 0.5683 0.8427 35 1 3.9786 2.1763 0.0902 36 1 3.3856 -1.3633 -0.6714 37 1 3.9137 -1.2123 -2.3645 38 1 7.3317 -3.9199 -0.6041 39 1 3.9175 3.0884 -1.3910 40 1 2.8484 4.8979 -2.8352 41 1 3.2100 6.2940 -4.8280 42 1 5.8914 2.2054 -4.1658 43 1 6.7971 2.6151 -6.4101 44 1 6.5681 6.3025 -8.2189 45 1 7.0244 6.4215 -6.5041 46 1 4.3632 5.5084 -7.6647 47 1 4.6729 6.9191 -6.6245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610559514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:24 Heat of formation + Delta-G solvation = -70.179827 kcal Electronic energy + Delta-G solvation = -30709.097281 eV Core-core repulsion = 26471.374181 eV Total energy + Delta-G solvation = -4237.723100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.11965 -40.13099 -38.60344 -37.73724 -35.95302 -35.05180 -34.28637 -33.40933 -32.45151 -29.95698 -29.81413 -29.09860 -27.42201 -26.14818 -24.60884 -23.18947 -22.99299 -22.82961 -22.08885 -19.67787 -19.26896 -18.39910 -17.48839 -17.18448 -16.93145 -16.37689 -16.18564 -15.99982 -15.73099 -15.44910 -15.13064 -14.78362 -14.67372 -14.24699 -14.16422 -13.87153 -13.63714 -13.50830 -13.47323 -13.02738 -12.78937 -12.59933 -12.31999 -12.20423 -11.90042 -11.84641 -11.57035 -11.48395 -11.33908 -11.05250 -10.94975 -10.88123 -10.42978 -10.15566 -10.13512 -9.88071 -9.65598 -9.55190 -9.37227 -8.54370 -8.33027 -7.97102 -7.66927 -6.05228 -4.03416 1.09947 1.32527 2.43317 2.88436 3.07535 3.34320 3.40602 3.43539 3.51026 3.79696 3.91771 4.14086 4.26913 4.44478 4.50555 4.56094 4.80925 4.98999 5.09345 5.13592 5.15287 5.20221 5.27336 5.28178 5.34151 5.37175 5.39092 5.42468 5.44497 5.59585 5.68080 5.69449 5.74465 6.01427 6.08312 6.25700 6.35050 6.37769 6.62860 6.66892 6.98635 7.02281 7.18813 7.21934 7.24750 7.43661 7.66673 7.89458 8.37347 8.49962 8.96170 9.05221 9.55572 11.08132 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.003166 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.172573 B = 8842.178679 C =10830.907173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.042 3.958 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.234 3.766 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.899 5.899 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.699 3.301 16 O -0.565 6.565 17 N -0.696 5.696 18 C 0.209 3.791 19 C -0.174 4.174 20 C -0.065 4.065 21 C -0.153 4.153 22 C 0.176 3.824 23 C -0.151 4.151 24 N -0.659 5.659 25 C 0.521 3.479 26 O -0.534 6.534 27 C -0.138 4.138 28 C -0.070 4.070 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.402 0.598 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.415 0.585 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 20.797 -2.920 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.036 4.036 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.114 3.886 7 C -0.568 4.568 8 H 0.091 0.909 9 C -0.129 4.129 10 N -0.538 5.538 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.401 3.599 16 O -0.441 6.441 17 N -0.345 5.345 18 C 0.112 3.888 19 C -0.196 4.196 20 C -0.084 4.084 21 C -0.157 4.157 22 C 0.080 3.920 23 C -0.174 4.174 24 N -0.304 5.304 25 C 0.309 3.691 26 O -0.410 6.410 27 C -0.177 4.177 28 C -0.108 4.108 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.239 0.761 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.170 0.830 43 H 0.253 0.747 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.097 0.903 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.438 19.952 -4.094 23.359 hybrid contribution -0.768 -0.822 0.456 1.214 sum -12.206 19.130 -3.638 22.982 Atomic orbital electron populations 1.22716 0.81796 1.02652 0.99340 1.88059 1.18942 1.26992 1.95192 1.23144 0.95123 0.85557 0.99800 1.21511 0.91218 0.98855 0.89808 1.47177 1.67686 1.08670 1.09028 1.19651 0.97697 0.73195 0.98058 1.21370 0.96216 0.93532 1.45672 0.90905 1.24815 0.95151 0.98330 0.94607 1.69899 1.18170 1.17267 1.48445 0.86882 0.82459 0.81387 0.79255 1.20040 1.21197 1.18623 1.15917 0.79019 0.80121 0.84814 1.90888 1.52173 1.72015 1.29010 1.42971 1.74707 1.05758 1.11082 1.17231 0.93029 0.90731 0.87808 1.20781 1.01555 0.97116 1.00172 1.20481 0.96453 0.99009 0.92504 1.19383 1.00045 0.97232 0.99007 1.17425 0.90385 0.94647 0.89572 1.21057 1.00245 1.02429 0.93704 1.43657 1.40249 1.14473 1.31984 1.20747 0.80523 0.88319 0.79488 1.90775 1.32898 1.80787 1.36581 1.21681 0.97700 0.93056 1.05312 1.20335 0.94781 1.00064 0.95574 0.94489 0.89781 0.94434 0.92696 0.93579 0.88163 0.90403 0.93695 0.94811 0.92638 0.76060 0.85652 0.85272 0.82966 0.74671 0.87576 0.87917 0.90311 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.67 9.53 -35.23 -0.34 -6.00 16 3 C 0.04 0.51 6.28 37.16 0.23 0.74 16 4 C 0.11 1.59 5.62 -4.04 -0.02 1.57 16 5 N -0.59 -11.66 2.42 -180.80 -0.44 -12.10 16 6 C 0.23 5.70 4.05 -5.20 -0.02 5.68 16 7 C -0.53 -15.06 9.94 -34.44 -0.34 -15.41 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 11 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 12 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 15 C 0.70 13.70 8.12 -86.91 -0.71 12.99 16 16 O -0.57 -13.38 13.36 5.29 0.07 -13.31 16 17 N -0.70 -9.94 5.22 -14.24 -0.07 -10.02 16 18 C 0.21 2.87 6.30 -83.71 -0.53 2.34 16 19 C -0.17 -1.78 9.96 -39.36 -0.39 -2.17 16 20 C -0.07 -0.58 9.68 -39.64 -0.38 -0.97 16 21 C -0.15 -1.57 5.66 -104.40 -0.59 -2.16 16 22 C 0.18 2.29 6.50 -83.77 -0.54 1.75 16 23 C -0.15 -2.31 8.57 -39.21 -0.34 -2.65 16 24 N -0.66 -8.67 5.36 -10.02 -0.05 -8.72 16 25 C 0.52 6.70 7.72 -11.18 -0.09 6.61 16 26 O -0.53 -8.78 17.91 5.55 0.10 -8.68 16 27 C -0.14 -1.17 6.07 -28.05 -0.17 -1.34 16 28 C -0.07 -0.53 5.99 -27.95 -0.17 -0.70 16 29 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 35 H 0.08 0.83 6.30 -51.93 -0.33 0.51 16 36 H 0.05 1.08 6.17 -51.93 -0.32 0.76 16 37 H 0.03 0.89 6.85 -51.93 -0.36 0.54 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.40 4.32 6.52 -40.82 -0.27 4.06 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.15 2.81 6.22 -52.49 -0.33 2.48 16 43 H 0.41 5.58 8.83 -40.82 -0.36 5.22 16 44 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.43 8.06 -51.93 -0.42 0.02 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -37.55 387.55 -8.44 -45.99 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.61 Total: 7.07 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -3.04 Total: 9.80 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.21 Total: -57.85 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.17 Total: -27.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.55 -8.44 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610559514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.188 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds