Wall clock time and date at job start Wed Apr 1 2020 04:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00422 * 2 1 4 4 C 1.52999 * 109.47394 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47073 * 64.99976 * 4 3 2 6 6 C 1.46500 * 119.99998 * 270.00355 * 5 4 3 7 7 C 1.50695 * 109.46929 * 269.99683 * 6 5 4 8 8 H 1.08001 * 120.00166 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00009 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99880 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99847 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47006 * 90.00166 * 11 9 7 13 13 H 1.48494 * 109.47252 * 209.99670 * 11 9 7 14 14 H 1.48497 * 109.47445 * 329.99904 * 11 9 7 15 15 C 1.34775 * 119.99884 * 89.99892 * 5 4 3 16 16 O 1.21580 * 120.00168 * 180.02562 * 15 5 4 17 17 N 1.34785 * 119.99879 * 0.02562 * 15 5 4 18 18 C 1.39945 * 119.99664 * 184.58925 * 17 15 5 19 19 C 1.38933 * 120.03013 * 144.90543 * 18 17 15 20 20 C 1.38146 * 120.07912 * 179.97438 * 19 18 17 21 21 C 1.38163 * 120.12253 * 0.02562 * 20 19 18 22 22 C 1.38920 * 120.07499 * 359.97438 * 21 20 19 23 23 C 1.38731 * 120.03186 * 324.87819 * 18 17 15 24 24 N 1.39836 * 119.93048 * 179.97438 * 22 21 20 25 25 C 1.34560 * 120.45873 * 18.54029 * 24 22 21 26 26 O 1.21284 * 119.62096 * 180.79727 * 25 24 22 27 27 C 1.50495 * 120.76286 * 0.79045 * 25 24 22 28 28 C 1.50684 * 120.11194 * 179.97438 * 21 20 19 29 29 H 1.09008 * 109.47258 * 59.99720 * 1 2 3 30 30 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47204 * 300.00217 * 1 2 3 32 32 H 1.09007 * 109.47057 * 59.99609 * 3 2 1 33 33 H 1.08996 * 109.47191 * 300.00194 * 3 2 1 34 34 H 1.09001 * 109.46870 * 305.00516 * 4 3 2 35 35 H 1.08996 * 109.47556 * 185.00062 * 4 3 2 36 36 H 1.09004 * 109.47226 * 29.99975 * 6 5 4 37 37 H 1.08997 * 109.46853 * 149.99754 * 6 5 4 38 38 H 0.96994 * 119.99864 * 180.02562 * 10 9 7 39 39 H 0.96998 * 119.99848 * 4.58615 * 17 15 5 40 40 H 1.08010 * 119.96120 * 359.69886 * 19 18 17 41 41 H 1.08001 * 119.94163 * 180.02562 * 20 19 18 42 42 H 1.08002 * 120.07508 * 0.02562 * 23 18 17 43 43 H 0.96992 * 119.77127 * 198.53226 * 24 22 21 44 44 H 1.09000 * 109.40270 * 204.65227 * 27 25 24 45 45 H 1.09005 * 109.39862 * 84.91820 * 27 25 24 46 46 H 1.09006 * 109.45724 * 266.07588 * 28 21 20 47 47 H 1.08993 * 109.46273 * 26.05134 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3403 7 6 5.5016 -1.2984 -0.9413 8 1 6.2200 -0.5465 -0.6498 9 6 5.8609 -2.6295 -0.9473 10 7 7.0788 -2.9835 -0.5995 11 14 4.6181 -3.9300 -1.4508 12 1 4.7046 -4.1564 -2.9159 13 1 4.9114 -5.1981 -0.7359 14 1 3.2504 -3.4695 -1.1010 15 6 4.2634 1.3327 -2.3200 16 8 4.6291 0.8176 -3.3588 17 7 4.1446 2.6728 -2.2376 18 6 4.3489 3.4645 -3.3733 19 6 3.5955 4.6163 -3.5627 20 6 3.7967 5.3989 -4.6832 21 6 4.7471 5.0385 -5.6191 22 6 5.5037 3.8880 -5.4354 23 6 5.3044 3.1003 -4.3109 24 7 6.4644 3.5258 -6.3848 25 6 6.9308 4.4321 -7.2633 26 8 7.7533 4.0979 -8.0896 27 6 6.4434 5.8557 -7.2325 28 6 4.9660 5.8919 -6.8415 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8507 0.5683 0.8427 35 1 3.9786 2.1763 0.0902 36 1 3.3856 -1.3633 -0.6714 37 1 3.9137 -1.2123 -2.3645 38 1 7.3317 -3.9199 -0.6041 39 1 3.9175 3.0884 -1.3910 40 1 2.8484 4.8979 -2.8352 41 1 3.2100 6.2940 -4.8280 42 1 5.8914 2.2054 -4.1658 43 1 6.7971 2.6151 -6.4101 44 1 6.5681 6.3025 -8.2189 45 1 7.0244 6.4215 -6.5041 46 1 4.3632 5.5084 -7.6647 47 1 4.6729 6.9191 -6.6245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610559514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:23 Heat of formation + Delta-G solvation = -98.816239 kcal Electronic energy + Delta-G solvation = -30710.339049 eV Core-core repulsion = 26471.374181 eV Total energy + Delta-G solvation = -4238.964868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.13614 -41.41877 -39.67964 -38.78692 -37.13885 -36.52486 -35.32799 -34.80815 -34.11235 -31.41362 -30.76669 -30.18162 -28.95438 -27.10301 -25.60438 -24.46850 -24.06557 -23.95466 -23.40885 -20.99001 -20.34751 -19.49064 -19.13827 -18.64773 -18.21710 -17.51132 -17.09409 -17.05401 -16.89220 -16.49839 -16.35747 -16.27529 -15.77249 -15.65007 -15.24496 -15.08791 -14.97056 -14.50771 -14.48540 -14.36827 -13.90158 -13.80492 -13.56530 -13.47047 -13.15298 -12.92613 -12.74918 -12.71385 -12.48149 -12.36648 -12.18272 -12.02067 -11.96298 -11.87819 -11.74022 -11.17613 -11.07703 -10.85456 -10.81353 -10.54090 -9.56756 -9.27109 -8.77020 -8.34018 -6.37482 0.18027 0.39243 1.31372 1.34758 1.44896 1.46007 1.67394 2.02844 2.15133 2.30982 2.84236 2.92258 2.94591 3.03138 3.41551 3.81748 3.84430 4.09531 4.11794 4.19136 4.28663 4.33251 4.35730 4.38742 4.47351 4.48367 4.55605 4.61189 4.76937 4.83422 4.88342 4.91032 4.91912 4.97397 4.98711 5.11075 5.14569 5.36531 5.39915 5.46880 5.52126 5.59335 5.65982 5.97149 6.01782 6.23958 6.26637 6.35523 6.63208 6.87092 7.00842 7.24049 7.58177 8.82915 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.003166 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.172573 B = 8842.178679 C =10830.907173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.047 3.953 4 C 0.102 3.898 5 N -0.601 5.601 6 C 0.253 3.747 7 C -0.533 4.533 8 H 0.030 0.970 9 C 0.013 3.987 10 N -0.946 5.946 11 Si 0.943 3.057 12 H -0.279 1.279 13 H -0.274 1.274 14 H -0.240 1.240 15 C 0.694 3.306 16 O -0.618 6.618 17 N -0.674 5.674 18 C 0.179 3.821 19 C -0.155 4.155 20 C -0.051 4.051 21 C -0.144 4.144 22 C 0.157 3.843 23 C -0.182 4.182 24 N -0.668 5.668 25 C 0.512 3.488 26 O -0.582 6.582 27 C -0.131 4.131 28 C -0.066 4.066 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.054 0.946 37 H 0.010 0.990 38 H 0.267 0.733 39 H 0.421 0.579 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.103 0.897 43 H 0.403 0.597 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.084 0.916 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 24.838 -2.600 29.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.030 4.030 4 C -0.020 4.020 5 N -0.335 5.335 6 C 0.130 3.870 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.766 3.234 12 H -0.205 1.205 13 H -0.199 1.199 14 H -0.163 1.163 15 C 0.396 3.604 16 O -0.498 6.498 17 N -0.325 5.325 18 C 0.083 3.917 19 C -0.176 4.176 20 C -0.069 4.069 21 C -0.147 4.147 22 C 0.061 3.939 23 C -0.206 4.206 24 N -0.310 5.310 25 C 0.304 3.696 26 O -0.462 6.462 27 C -0.170 4.170 28 C -0.102 4.102 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.261 0.739 40 H 0.181 0.819 41 H 0.198 0.802 42 H 0.121 0.879 43 H 0.239 0.761 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.103 0.897 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.529 24.093 -3.709 28.903 hybrid contribution 0.552 -1.955 0.360 2.063 sum -14.977 22.138 -3.349 26.937 Atomic orbital electron populations 1.22864 0.79872 1.03191 1.00878 1.87988 1.21219 1.28862 1.95565 1.23164 0.92671 0.85034 1.02141 1.21882 0.93711 0.99870 0.86584 1.47073 1.68141 1.07144 1.11104 1.19122 0.94924 0.76592 0.96319 1.21625 0.97606 0.92850 1.45065 0.95214 1.25766 0.97235 1.00930 0.94564 1.70046 1.20442 1.18033 1.50095 0.85786 0.80731 0.78466 0.78443 1.20456 1.19886 1.16272 1.16143 0.78549 0.81785 0.83961 1.90860 1.54286 1.73555 1.31116 1.42564 1.73857 1.03622 1.12452 1.17538 0.94262 0.92324 0.87543 1.21190 1.00535 0.94786 1.01097 1.21069 0.95366 0.99777 0.90737 1.19867 0.98850 0.95737 1.00277 1.17610 0.91382 0.95929 0.88984 1.20833 1.01694 1.01896 0.96142 1.43850 1.40491 1.14271 1.32351 1.21751 0.79608 0.90003 0.78285 1.90742 1.35124 1.81853 1.38460 1.21789 0.98766 0.89388 1.07061 1.20483 0.93741 1.01855 0.94148 0.93744 0.89932 0.91966 0.88585 0.92605 0.89942 0.86690 0.92826 0.97216 0.92373 0.73855 0.81902 0.80226 0.87935 0.76100 0.85699 0.86198 0.89735 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.42 -11.90 9.53 -148.98 -1.42 -13.32 16 3 C 0.05 1.02 6.28 71.98 0.45 1.47 16 4 C 0.10 2.84 5.62 86.38 0.49 3.33 16 5 N -0.60 -24.35 2.42 -844.20 -2.04 -26.39 16 6 C 0.25 12.78 4.05 85.63 0.35 13.13 16 7 C -0.53 -32.09 9.94 25.60 0.25 -31.84 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.01 0.78 5.47 84.66 0.46 1.25 16 10 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 11 Si 0.94 46.39 27.47 68.60 1.88 48.28 16 12 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 13 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 15 C 0.69 28.33 8.12 179.05 1.45 29.79 16 16 O -0.62 -31.67 13.36 -3.97 -0.05 -31.72 16 17 N -0.67 -18.98 5.22 -317.23 -1.65 -20.64 16 18 C 0.18 4.78 6.30 38.13 0.24 5.02 16 19 C -0.15 -2.48 9.96 22.41 0.22 -2.26 16 20 C -0.05 -0.63 9.68 22.23 0.22 -0.41 16 21 C -0.14 -2.48 5.66 -19.72 -0.11 -2.59 16 22 C 0.16 4.15 6.50 38.15 0.25 4.40 16 23 C -0.18 -5.95 8.57 22.51 0.19 -5.76 16 24 N -0.67 -18.90 5.36 -304.12 -1.63 -20.53 16 25 C 0.51 13.46 7.72 87.63 0.68 14.13 16 26 O -0.58 -20.10 17.91 -3.04 -0.05 -20.15 16 27 C -0.13 -1.86 6.07 29.74 0.18 -1.68 16 28 C -0.07 -0.68 5.99 29.80 0.18 -0.50 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 35 H 0.12 2.23 6.30 -2.39 -0.02 2.21 16 36 H 0.05 2.61 6.17 -2.38 -0.01 2.60 16 37 H 0.01 0.54 6.85 -2.39 -0.02 0.52 16 38 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 39 H 0.42 8.11 6.52 -92.71 -0.60 7.50 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 42 H 0.10 4.35 6.22 -2.91 -0.02 4.33 16 43 H 0.40 12.55 8.83 -92.71 -0.82 11.73 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.13 0.32 8.06 -2.39 -0.02 0.30 16 Total: -1.00 -93.08 387.55 1.62 -91.46 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.46 Total: 24.64 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 6.75 Total: 29.27 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -5.03 Total: -128.45 kcal Atomic # 8 Polarization: -63.67 SS G_CDS: -1.53 Total: -65.20 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.88 Total: 48.28 kcal Total: -93.08 1.62 -91.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610559514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.357 kcal (2) G-P(sol) polarization free energy of solvation -93.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds