Wall clock time and date at job start Wed Apr 1 2020 04:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47482 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46674 * 65.00325 * 4 3 2 6 6 C 1.46501 * 119.99622 * 269.99814 * 5 4 3 7 7 C 1.50701 * 109.47045 * 269.99797 * 6 5 4 8 8 H 1.07998 * 120.00548 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00069 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99606 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00200 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47098 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47515 * 119.99975 * 11 9 7 14 14 H 1.48500 * 109.47283 * 240.00025 * 11 9 7 15 15 C 1.34775 * 119.99999 * 90.00431 * 5 4 3 16 16 O 1.21576 * 119.99850 * 180.02562 * 15 5 4 17 17 N 1.34774 * 120.00229 * 359.97438 * 15 5 4 18 18 C 1.38818 * 119.99885 * 185.09916 * 17 15 5 19 19 C 1.39368 * 119.38731 * 174.83214 * 18 17 15 20 20 C 1.36908 * 119.10775 * 180.02562 * 19 18 17 21 21 C 1.40383 * 118.34796 * 0.02562 * 20 19 18 22 22 C 1.39599 * 119.74488 * 359.81540 * 21 20 19 23 23 N 1.32144 * 119.62895 * 0.26319 * 22 21 20 24 24 C 1.50516 * 121.39797 * 180.31326 * 22 21 20 25 25 C 1.52619 * 111.23831 * 337.23644 * 24 22 21 26 26 C 1.53435 * 109.41318 * 54.68635 * 25 24 22 27 27 C 1.47161 * 119.89264 * 179.52522 * 21 20 19 28 28 O 1.21294 * 121.17283 * 348.91374 * 27 21 20 29 29 H 1.09005 * 109.47058 * 59.99696 * 1 2 3 30 30 H 1.08994 * 109.47549 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47337 * 300.00070 * 1 2 3 32 32 H 1.09005 * 109.46888 * 59.99559 * 3 2 1 33 33 H 1.09000 * 109.47175 * 300.00422 * 3 2 1 34 34 H 1.08998 * 109.47084 * 305.00384 * 4 3 2 35 35 H 1.08997 * 109.47165 * 184.99727 * 4 3 2 36 36 H 1.08996 * 109.47667 * 30.00005 * 6 5 4 37 37 H 1.09005 * 109.47012 * 150.00618 * 6 5 4 38 38 H 0.97008 * 119.99979 * 180.02562 * 10 9 7 39 39 H 0.96997 * 119.99499 * 5.09852 * 17 15 5 40 40 H 1.08002 * 120.44705 * 0.09063 * 19 18 17 41 41 H 1.07996 * 120.82587 * 180.02562 * 20 19 18 42 42 H 1.08996 * 109.12519 * 216.78135 * 24 22 21 43 43 H 1.08999 * 109.07886 * 97.65414 * 24 22 21 44 44 H 1.08999 * 109.48595 * 174.67455 * 25 24 22 45 45 H 1.09002 * 109.48334 * 294.70042 * 25 24 22 46 46 H 1.08997 * 109.88193 * 55.52965 * 26 25 24 47 47 H 1.08995 * 109.88586 * 176.61003 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9765 0.5640 -1.2510 6 6 4.1061 -0.8926 -1.3404 7 6 5.5016 -1.2982 -0.9414 8 1 6.2200 -0.5463 -0.6499 9 6 5.8612 -2.6292 -0.9484 10 7 4.9863 -3.5448 -1.3028 11 14 7.5907 -3.1321 -0.4532 12 1 8.3760 -1.9222 -0.1000 13 1 7.5255 -4.0403 0.7198 14 1 8.2459 -3.8335 -1.5864 15 6 4.2633 1.3330 -2.3200 16 8 4.6289 0.8179 -3.3588 17 7 4.1437 2.6729 -2.2379 18 6 4.3360 3.4574 -3.3668 19 6 4.1037 4.8296 -3.2938 20 6 4.2947 5.5978 -4.4108 21 6 4.7188 4.9654 -5.5902 22 6 4.9373 3.5866 -5.5967 23 7 4.7375 2.8883 -4.4928 24 6 5.3989 2.8717 -6.8382 25 6 5.0496 3.6643 -8.0948 26 6 5.6214 5.0834 -7.9781 27 6 4.9246 5.7569 -6.8136 28 8 4.5491 6.9079 -6.8873 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8507 0.5684 0.8426 35 1 3.9784 2.1765 0.0902 36 1 3.3857 -1.3632 -0.6714 37 1 3.9137 -1.2122 -2.3646 38 1 5.2391 -4.4814 -1.3074 39 1 3.9232 3.0890 -1.3899 40 1 3.7784 5.2811 -2.3682 41 1 4.1233 6.6638 -4.3853 42 1 4.9184 1.8946 -6.8872 43 1 6.4794 2.7362 -6.7904 44 1 5.4779 3.1704 -8.9670 45 1 3.9662 3.7166 -8.2022 46 1 6.6942 5.0365 -7.7909 47 1 5.4284 5.6376 -8.8965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000653689319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:26 Heat of formation + Delta-G solvation = -79.759879 kcal Electronic energy + Delta-G solvation = -30773.952073 eV Core-core repulsion = 26535.813551 eV Total energy + Delta-G solvation = -4238.138522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.24082 -41.14538 -39.71684 -38.77072 -37.14593 -36.47665 -35.55235 -34.60488 -33.64423 -31.16947 -30.86394 -29.44284 -28.85484 -27.12674 -25.80450 -24.75623 -24.25933 -23.78444 -22.71760 -21.03310 -20.69265 -19.28897 -18.58647 -18.49597 -17.71553 -17.53272 -17.29244 -16.95546 -16.70682 -16.43221 -16.12734 -15.82653 -15.66760 -15.58074 -15.25222 -15.09384 -14.82791 -14.73058 -14.29819 -14.27451 -13.85927 -13.67148 -13.58136 -13.29554 -13.07088 -12.91013 -12.78502 -12.75564 -12.55302 -12.17756 -12.16091 -12.00677 -11.98008 -11.72654 -11.58598 -11.27216 -10.83516 -10.73131 -10.61189 -10.54965 -10.05600 -9.56246 -9.19728 -8.16481 -6.30887 -0.50908 0.26607 1.31071 1.37219 1.39850 1.47814 1.53542 2.20943 2.40850 2.76133 2.83237 2.94445 3.06979 3.13045 3.26720 3.62923 3.80049 3.89841 3.99921 4.06870 4.12147 4.17833 4.22678 4.30415 4.42550 4.43307 4.51865 4.56539 4.58161 4.69122 4.74482 4.84887 4.86043 4.90596 4.98269 5.03182 5.11030 5.20698 5.23087 5.26785 5.31685 5.58612 5.70401 5.76882 5.94877 6.12598 6.33724 6.46081 6.77754 6.81268 7.19661 7.35733 7.68889 8.90380 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.003140 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.131002 B = 8915.286273 C =10671.689410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.044 3.956 4 C 0.102 3.898 5 N -0.605 5.605 6 C 0.291 3.709 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.967 3.033 12 H -0.268 1.268 13 H -0.270 1.270 14 H -0.283 1.283 15 C 0.682 3.318 16 O -0.573 6.573 17 N -0.654 5.654 18 C 0.399 3.601 19 C -0.214 4.214 20 C 0.008 3.992 21 C -0.280 4.280 22 C 0.208 3.792 23 N -0.533 5.533 24 C -0.081 4.081 25 C -0.100 4.100 26 C -0.157 4.157 27 C 0.414 3.586 28 O -0.492 6.492 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.032 0.968 37 H -0.012 1.012 38 H 0.265 0.735 39 H 0.428 0.572 40 H 0.182 0.818 41 H 0.167 0.833 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.121 0.879 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 20.598 -3.505 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C -0.033 4.033 4 C -0.020 4.020 5 N -0.340 5.340 6 C 0.169 3.831 7 C -0.579 4.579 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.791 3.209 12 H -0.192 1.192 13 H -0.195 1.195 14 H -0.209 1.209 15 C 0.383 3.617 16 O -0.447 6.447 17 N -0.305 5.305 18 C 0.165 3.835 19 C -0.237 4.237 20 C -0.017 4.017 21 C -0.285 4.285 22 C 0.069 3.931 23 N -0.249 5.249 24 C -0.118 4.118 25 C -0.138 4.138 26 C -0.194 4.194 27 C 0.294 3.706 28 O -0.370 6.370 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.074 0.926 39 H 0.270 0.730 40 H 0.200 0.800 41 H 0.184 0.816 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.085 0.915 46 H 0.139 0.861 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.323 19.420 -4.189 20.332 hybrid contribution 0.212 0.100 0.853 0.885 sum -4.111 19.520 -3.336 20.225 Atomic orbital electron populations 1.22843 0.80078 1.03082 1.00707 1.88044 1.21071 1.28826 1.95501 1.23204 0.93400 0.84995 1.01716 1.21873 0.93253 0.99883 0.87026 1.47425 1.68006 1.07734 1.10817 1.18555 0.95452 0.73869 0.95197 1.21785 0.98321 0.92524 1.45256 0.93012 1.25830 1.01684 0.96418 0.95214 1.70082 1.36401 1.01367 1.48908 0.85385 0.79232 0.78263 0.77978 1.19222 1.19472 1.20885 1.16258 0.79541 0.81389 0.84488 1.90977 1.51132 1.72338 1.30212 1.42814 1.71337 1.04884 1.11445 1.18819 0.90021 0.88539 0.86170 1.21457 1.09087 0.90347 1.02794 1.21553 0.88675 1.01424 0.90079 1.21236 1.13576 0.95268 0.98447 1.21881 0.88511 0.89513 0.93193 1.67670 1.17278 1.40515 0.99428 1.20540 1.02892 0.99038 0.89378 1.21493 1.01820 0.93360 0.97154 1.22372 1.02541 0.97013 0.97508 1.22813 0.74134 0.85726 0.87907 1.90508 1.43478 1.19391 1.83664 0.94147 0.90106 0.91730 0.88491 0.93467 0.89641 0.86413 0.94959 0.99357 0.92573 0.72989 0.80034 0.81572 0.90452 0.88009 0.86734 0.91506 0.86071 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -13.82 9.53 -148.98 -1.42 -15.23 16 3 C 0.04 1.10 6.28 71.98 0.45 1.55 16 4 C 0.10 3.01 5.62 86.38 0.49 3.50 16 5 N -0.60 -25.99 2.42 -844.22 -2.04 -28.03 16 6 C 0.29 16.20 4.98 85.63 0.43 16.62 16 7 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.01 0.43 5.46 84.66 0.46 0.89 16 10 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 11 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 15 C 0.68 29.69 8.23 179.06 1.47 31.17 16 16 O -0.57 -31.31 14.15 -3.95 -0.06 -31.36 16 17 N -0.65 -19.99 5.24 -322.39 -1.69 -21.68 16 18 C 0.40 12.18 7.41 133.18 0.99 13.16 16 19 C -0.21 -4.41 9.88 22.23 0.22 -4.19 16 20 C 0.01 0.17 9.66 22.48 0.22 0.38 16 21 C -0.28 -6.83 5.82 -20.08 -0.12 -6.94 16 22 C 0.21 6.02 6.69 42.78 0.29 6.31 16 23 N -0.53 -19.52 7.72 -180.19 -1.39 -20.91 16 24 C -0.08 -1.87 5.91 29.66 0.18 -1.70 16 25 C -0.10 -1.50 5.89 30.61 0.18 -1.32 16 26 C -0.16 -2.23 6.19 30.25 0.19 -2.04 16 27 C 0.41 8.95 6.88 28.29 0.19 9.15 16 28 O -0.49 -12.93 17.30 -3.07 -0.05 -12.99 16 29 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 2.75 8.07 -2.39 -0.02 2.73 16 35 H 0.12 2.29 6.29 -2.39 -0.02 2.27 16 36 H 0.03 1.88 7.11 -2.39 -0.02 1.86 16 37 H -0.01 -0.77 7.42 -2.38 -0.02 -0.78 16 38 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 39 H 0.43 8.71 6.38 -92.71 -0.59 8.11 16 40 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.17 2.74 7.77 -2.91 -0.02 2.71 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 43 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -89.32 392.58 3.19 -86.13 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.41 Total: 16.47 kcal Atomic # 6 Polarization: 29.79 SS G_CDS: 7.12 Total: 36.91 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -4.84 Total: -127.87 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.53 Total: -59.58 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -89.32 3.19 -86.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000653689319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.371 kcal (2) G-P(sol) polarization free energy of solvation -89.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds