Wall clock time and date at job start Wed Apr 1 2020 04:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34640 * 116.99907 * 2 1 4 4 O 1.21512 * 119.99983 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00094 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63083 * 359.97438 * 5 3 2 7 7 C 1.53185 * 108.77583 * 126.41352 * 6 5 3 8 8 C 1.53038 * 109.31475 * 54.63536 * 7 6 5 9 9 C 1.53043 * 109.53863 * 298.63324 * 8 7 6 10 10 H 1.08995 * 109.52447 * 301.39567 * 9 8 7 11 11 N 1.46501 * 109.49477 * 181.31342 * 9 8 7 12 12 C 1.34777 * 119.99499 * 155.16419 * 11 9 8 13 13 O 1.21588 * 120.00022 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99888 * 179.97438 * 12 11 9 15 15 C 1.39250 * 120.00027 * 175.71129 * 14 12 11 16 16 C 1.39480 * 119.83087 * 215.02214 * 15 14 12 17 17 C 1.36372 * 120.16424 * 179.76077 * 16 15 14 18 18 C 1.40872 * 119.83125 * 0.49042 * 17 16 15 19 19 C 1.41152 * 120.16986 * 179.74216 * 18 17 16 20 20 H 1.07998 * 120.00629 * 214.81020 * 19 18 17 21 21 C 1.39900 * 119.99717 * 34.80015 * 19 18 17 22 22 N 1.30881 * 119.99981 * 355.56725 * 21 19 18 23 23 Si 1.86799 * 120.00060 * 175.56085 * 21 19 18 24 24 H 1.48498 * 109.47257 * 60.00032 * 23 21 19 25 25 H 1.48492 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47038 * 300.00477 * 23 21 19 27 27 C 1.40871 * 119.67031 * 359.76204 * 18 17 16 28 28 C 1.36378 * 119.82797 * 0.02562 * 27 18 17 29 29 C 1.46923 * 120.63200 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.46998 * 300.00238 * 1 2 3 31 31 H 1.08996 * 109.47016 * 60.00107 * 1 2 3 32 32 H 1.08997 * 109.46860 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.58657 * 246.20051 * 6 5 3 34 34 H 1.09006 * 109.58463 * 6.62406 * 6 5 3 35 35 H 1.09004 * 109.50008 * 174.58692 * 7 6 5 36 36 H 1.09007 * 109.50015 * 294.68248 * 7 6 5 37 37 H 1.09004 * 109.46287 * 178.61490 * 8 7 6 38 38 H 1.08998 * 109.44752 * 58.64543 * 8 7 6 39 39 H 0.96999 * 120.00296 * 335.16140 * 11 9 8 40 40 H 0.96994 * 120.00006 * 355.71474 * 14 12 11 41 41 H 1.07991 * 119.91768 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.08768 * 180.25777 * 17 16 15 43 43 H 0.97000 * 119.99639 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.08737 * 180.02562 * 27 18 17 45 45 H 1.08003 * 119.91511 * 180.02562 * 28 27 18 46 46 H 1.09003 * 109.58680 * 353.37309 * 29 5 3 47 47 H 1.09000 * 109.59045 * 113.80159 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2229 0.0469 -0.0005 7 6 5.2124 0.1130 -1.1681 8 6 6.0233 1.4072 -1.0718 9 6 5.0815 2.6097 -1.1682 10 1 4.5352 2.5698 -2.1106 11 7 5.8619 3.8481 -1.1074 12 6 5.3742 4.9794 -1.6541 13 8 4.2864 4.9722 -2.1973 14 7 6.0919 6.1188 -1.5978 15 6 5.6298 7.2651 -2.2393 16 6 6.5386 8.1470 -2.8239 17 6 6.0932 9.2691 -3.4582 18 6 4.7122 9.5418 -3.5129 19 6 4.2438 10.7039 -4.1628 20 1 3.3773 11.2237 -3.7817 21 6 4.9023 11.1826 -5.3006 22 7 6.0022 10.6046 -5.7119 23 14 4.2116 12.6466 -6.2328 24 1 4.1520 13.8246 -5.3307 25 1 5.0880 12.9537 -7.3916 26 1 2.8453 12.3249 -6.7177 27 6 3.8010 8.6489 -2.9155 28 6 4.2610 7.5286 -2.2886 29 6 4.0905 2.5719 0.0000 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 4.7707 -0.0276 0.9389 34 1 3.5759 -0.8224 -0.1185 35 1 5.8862 -0.7427 -1.1229 36 1 4.6648 0.0960 -2.1105 37 1 6.7452 1.4451 -1.8876 38 1 6.5509 1.4348 -0.1184 39 1 6.7295 3.8538 -0.6738 40 1 6.9302 6.1403 -1.1104 41 1 7.5972 7.9390 -2.7772 42 1 6.7977 9.9491 -3.9140 43 1 6.4585 10.9363 -6.5010 44 1 2.7408 8.8511 -2.9538 45 1 3.5636 6.8429 -1.8304 46 1 3.3562 3.3688 -0.1177 47 1 4.6276 2.7029 0.9395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726694888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:27 Heat of formation + Delta-G solvation = -78.707807 kcal Electronic energy + Delta-G solvation = -30023.406598 eV Core-core repulsion = 25785.313697 eV Total energy + Delta-G solvation = -4238.092901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.92184 -39.99458 -38.54218 -37.27199 -36.40604 -34.79136 -34.24596 -32.93854 -32.52663 -30.20500 -29.46765 -28.54949 -27.91822 -25.54130 -24.95864 -23.41346 -21.93200 -21.44686 -20.80285 -20.32454 -19.91587 -18.35723 -17.92536 -17.24262 -17.19037 -16.85524 -16.50645 -15.52350 -15.28129 -15.08531 -14.97441 -14.55581 -14.32426 -14.27693 -13.89645 -13.83985 -13.49396 -13.21016 -12.99245 -12.88983 -12.61634 -12.32842 -12.05992 -11.93724 -11.63507 -11.48357 -11.41406 -11.28160 -11.08214 -10.99135 -10.96991 -10.88658 -10.67481 -10.63307 -10.06565 -9.48901 -9.41921 -9.37891 -9.17326 -8.85139 -8.75085 -7.47363 -6.77440 -6.55400 -4.27431 1.86042 2.63337 2.72383 2.98452 3.12570 3.14605 3.16862 3.22209 3.64415 3.71163 4.03169 4.39591 4.44054 4.49370 4.66355 4.75329 4.79466 4.91062 4.97152 5.00031 5.07487 5.16893 5.26084 5.37922 5.42917 5.56091 5.64341 5.71307 5.79126 5.93598 6.04832 6.10371 6.24761 6.50291 6.57903 6.82623 6.86461 7.06929 7.11006 7.21029 7.33208 7.45634 7.71957 7.92549 8.02499 8.08617 8.15824 8.37766 8.50124 8.70326 8.98004 8.99683 9.13473 10.35868 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.002089 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.142518 B =13403.286252 C =14492.962072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.647 3.353 4 O -0.561 6.561 5 N -0.592 5.592 6 C 0.110 3.890 7 C -0.132 4.132 8 C -0.128 4.128 9 C 0.154 3.846 10 H 0.094 0.906 11 N -0.746 5.746 12 C 0.693 3.307 13 O -0.571 6.571 14 N -0.666 5.666 15 C 0.023 3.977 16 C -0.123 4.123 17 C -0.141 4.141 18 C 0.098 3.902 19 C -0.462 4.462 20 H 0.075 0.925 21 C 0.069 3.931 22 N -0.814 5.814 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.204 4.204 28 C -0.086 4.086 29 C 0.115 3.885 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.394 0.606 40 H 0.391 0.609 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.277 0.723 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -22.791 11.642 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.449 6.449 5 N -0.333 5.333 6 C -0.013 4.013 7 C -0.171 4.171 8 C -0.166 4.166 9 C 0.047 3.953 10 H 0.112 0.888 11 N -0.403 5.403 12 C 0.394 3.606 13 O -0.447 6.447 14 N -0.312 5.312 15 C -0.070 4.070 16 C -0.144 4.144 17 C -0.161 4.161 18 C 0.095 3.905 19 C -0.493 4.493 20 H 0.093 0.907 21 C -0.145 4.145 22 N -0.442 5.442 23 Si 0.740 3.260 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.191 1.191 27 C -0.224 4.224 28 C -0.106 4.106 29 C -0.008 4.008 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.227 0.773 40 H 0.224 0.776 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.831 -22.484 10.925 25.012 hybrid contribution 0.507 0.577 -0.145 0.782 sum 1.338 -21.907 10.780 24.452 Atomic orbital electron populations 1.23199 0.74409 1.03332 1.02956 1.86197 1.24166 1.31099 1.87256 1.18034 0.83152 0.82183 0.76517 1.91058 1.63998 1.34818 1.55029 1.46790 1.01925 1.08254 1.76315 1.21784 0.93923 0.86731 0.98829 1.21900 0.98146 0.97750 0.99261 1.21835 0.98109 0.93506 1.03169 1.21007 0.91975 0.82710 0.99639 0.88808 1.45063 1.22797 1.08503 1.63934 1.16066 0.84709 0.80132 0.79711 1.90951 1.20476 1.84284 1.48967 1.42101 1.25189 1.08573 1.55294 1.17067 0.93267 0.89144 1.07498 1.20280 0.96418 0.97069 1.00604 1.21167 0.96583 0.97672 1.00692 1.17715 0.91294 0.91991 0.89475 1.19445 1.11824 1.08726 1.09279 0.90722 1.25865 0.94001 0.97101 0.97570 1.69761 1.14677 1.37597 1.22147 0.86259 0.79630 0.81165 0.78916 1.19105 1.20508 1.19146 1.20820 0.98057 0.96043 1.07448 1.20442 0.93496 0.96689 0.99968 1.22159 0.96206 0.83917 0.98475 0.91865 0.91699 0.88013 0.90988 0.88809 0.89782 0.90880 0.90487 0.91013 0.77256 0.77556 0.89195 0.85063 0.91206 0.88645 0.87279 0.87672 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.56 101.05 1.07 1.51 16 2 O -0.37 -3.99 9.20 -40.32 -0.37 -4.36 16 3 C 0.65 8.73 8.43 54.06 0.46 9.18 16 4 O -0.56 -9.87 15.54 -19.28 -0.30 -10.17 16 5 N -0.59 -6.47 2.97 -178.53 -0.53 -7.00 16 6 C 0.11 0.75 6.45 -3.71 -0.02 0.73 16 7 C -0.13 -0.79 6.08 -26.62 -0.16 -0.95 16 8 C -0.13 -0.88 5.35 -26.69 -0.14 -1.02 16 9 C 0.15 1.71 2.61 -67.78 -0.18 1.53 16 10 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 11 N -0.75 -8.84 5.09 -58.53 -0.30 -9.14 16 12 C 0.69 12.24 8.36 -86.92 -0.73 11.51 16 13 O -0.57 -12.91 13.42 5.29 0.07 -12.83 16 14 N -0.67 -11.70 5.31 -14.10 -0.07 -11.78 16 15 C 0.02 0.52 6.31 -83.57 -0.53 -0.01 16 16 C -0.12 -2.84 9.90 -39.79 -0.39 -3.24 16 17 C -0.14 -3.69 8.62 -39.26 -0.34 -4.03 16 18 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 19 C -0.46 -12.62 9.02 -37.85 -0.34 -12.96 16 20 H 0.07 1.96 7.85 -52.49 -0.41 1.55 16 21 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 22 N -0.81 -21.60 10.60 55.55 0.59 -21.01 16 23 Si 0.92 19.47 29.56 -169.99 -5.03 14.45 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 C -0.20 -5.35 9.74 -39.26 -0.38 -5.73 16 28 C -0.09 -2.13 8.61 -39.79 -0.34 -2.48 16 29 C 0.12 1.37 6.01 -3.69 -0.02 1.34 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.60 6.93 -51.93 -0.36 0.24 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.39 3.24 8.62 -40.82 -0.35 2.88 16 40 H 0.39 5.24 8.83 -40.82 -0.36 4.88 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 43 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 44 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.11 2.74 6.22 -52.48 -0.33 2.41 16 46 H 0.10 1.70 7.00 -51.93 -0.36 1.34 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -35.31 386.87 -9.53 -44.83 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.67 Total: 12.00 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.74 Total: -0.82 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.31 Total: -48.93 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.60 Total: -27.37 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.31 -9.53 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726694888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.875 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds