Wall clock time and date at job start Wed Apr 1 2020 04:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34640 * 116.99907 * 2 1 4 4 O 1.21512 * 119.99983 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00094 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63083 * 359.97438 * 5 3 2 7 7 C 1.53185 * 108.77583 * 126.41352 * 6 5 3 8 8 C 1.53038 * 109.31475 * 54.63536 * 7 6 5 9 9 C 1.53043 * 109.53863 * 298.63324 * 8 7 6 10 10 H 1.08995 * 109.52447 * 301.39567 * 9 8 7 11 11 N 1.46501 * 109.49477 * 181.31342 * 9 8 7 12 12 C 1.34777 * 119.99499 * 155.16419 * 11 9 8 13 13 O 1.21588 * 120.00022 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99888 * 179.97438 * 12 11 9 15 15 C 1.39250 * 120.00027 * 175.71129 * 14 12 11 16 16 C 1.39480 * 119.83087 * 215.02214 * 15 14 12 17 17 C 1.36372 * 120.16424 * 179.76077 * 16 15 14 18 18 C 1.40872 * 119.83125 * 0.49042 * 17 16 15 19 19 C 1.41152 * 120.16986 * 179.74216 * 18 17 16 20 20 H 1.07998 * 120.00629 * 214.81020 * 19 18 17 21 21 C 1.39900 * 119.99717 * 34.80015 * 19 18 17 22 22 N 1.30881 * 119.99981 * 355.56725 * 21 19 18 23 23 Si 1.86799 * 120.00060 * 175.56085 * 21 19 18 24 24 H 1.48498 * 109.47257 * 60.00032 * 23 21 19 25 25 H 1.48492 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47038 * 300.00477 * 23 21 19 27 27 C 1.40871 * 119.67031 * 359.76204 * 18 17 16 28 28 C 1.36378 * 119.82797 * 0.02562 * 27 18 17 29 29 C 1.46923 * 120.63200 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.46998 * 300.00238 * 1 2 3 31 31 H 1.08996 * 109.47016 * 60.00107 * 1 2 3 32 32 H 1.08997 * 109.46860 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.58657 * 246.20051 * 6 5 3 34 34 H 1.09006 * 109.58463 * 6.62406 * 6 5 3 35 35 H 1.09004 * 109.50008 * 174.58692 * 7 6 5 36 36 H 1.09007 * 109.50015 * 294.68248 * 7 6 5 37 37 H 1.09004 * 109.46287 * 178.61490 * 8 7 6 38 38 H 1.08998 * 109.44752 * 58.64543 * 8 7 6 39 39 H 0.96999 * 120.00296 * 335.16140 * 11 9 8 40 40 H 0.96994 * 120.00006 * 355.71474 * 14 12 11 41 41 H 1.07991 * 119.91768 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.08768 * 180.25777 * 17 16 15 43 43 H 0.97000 * 119.99639 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.08737 * 180.02562 * 27 18 17 45 45 H 1.08003 * 119.91511 * 180.02562 * 28 27 18 46 46 H 1.09003 * 109.58680 * 353.37309 * 29 5 3 47 47 H 1.09000 * 109.59045 * 113.80159 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2229 0.0469 -0.0005 7 6 5.2124 0.1130 -1.1681 8 6 6.0233 1.4072 -1.0718 9 6 5.0815 2.6097 -1.1682 10 1 4.5352 2.5698 -2.1106 11 7 5.8619 3.8481 -1.1074 12 6 5.3742 4.9794 -1.6541 13 8 4.2864 4.9722 -2.1973 14 7 6.0919 6.1188 -1.5978 15 6 5.6298 7.2651 -2.2393 16 6 6.5386 8.1470 -2.8239 17 6 6.0932 9.2691 -3.4582 18 6 4.7122 9.5418 -3.5129 19 6 4.2438 10.7039 -4.1628 20 1 3.3773 11.2237 -3.7817 21 6 4.9023 11.1826 -5.3006 22 7 6.0022 10.6046 -5.7119 23 14 4.2116 12.6466 -6.2328 24 1 4.1520 13.8246 -5.3307 25 1 5.0880 12.9537 -7.3916 26 1 2.8453 12.3249 -6.7177 27 6 3.8010 8.6489 -2.9155 28 6 4.2610 7.5286 -2.2886 29 6 4.0905 2.5719 0.0000 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 4.7707 -0.0276 0.9389 34 1 3.5759 -0.8224 -0.1185 35 1 5.8862 -0.7427 -1.1229 36 1 4.6648 0.0960 -2.1105 37 1 6.7452 1.4451 -1.8876 38 1 6.5509 1.4348 -0.1184 39 1 6.7295 3.8538 -0.6738 40 1 6.9302 6.1403 -1.1104 41 1 7.5972 7.9390 -2.7772 42 1 6.7977 9.9491 -3.9140 43 1 6.4585 10.9363 -6.5010 44 1 2.7408 8.8511 -2.9538 45 1 3.5636 6.8429 -1.8304 46 1 3.3562 3.3688 -0.1177 47 1 4.6276 2.7029 0.9395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726694888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:26 Heat of formation + Delta-G solvation = -103.670854 kcal Electronic energy + Delta-G solvation = -30024.489077 eV Core-core repulsion = 25785.313697 eV Total energy + Delta-G solvation = -4239.175380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.91800 -41.37901 -39.69959 -38.87355 -37.42430 -36.24469 -35.72118 -34.69476 -33.37810 -31.56074 -31.26403 -30.21869 -28.68286 -26.77126 -26.30079 -24.44671 -23.31196 -22.74738 -22.47223 -21.66593 -21.03761 -19.45486 -19.21401 -19.05539 -18.24445 -18.18857 -17.61664 -17.06370 -16.63543 -16.35409 -15.88626 -15.73617 -15.60595 -15.46891 -15.15166 -14.87035 -14.71984 -14.51628 -14.32116 -14.00169 -13.90164 -13.80323 -13.58754 -13.21397 -13.07109 -12.89895 -12.77995 -12.63921 -12.47141 -12.16672 -12.04299 -11.86754 -11.84105 -11.69649 -11.59482 -11.39649 -11.23717 -11.00589 -10.66832 -10.44991 -9.74495 -9.45598 -8.68335 -8.49113 -6.31461 0.84070 0.99442 1.15244 1.39143 1.48999 1.51694 1.60911 1.75582 2.19317 2.25375 2.81919 2.88728 3.36117 3.66063 3.69271 3.77186 3.97371 4.03096 4.16739 4.30875 4.31831 4.40478 4.46512 4.53230 4.54646 4.65466 4.69963 4.75306 4.89668 4.94002 5.02074 5.12087 5.14528 5.15797 5.21540 5.23017 5.33037 5.36828 5.45353 5.54349 5.70271 5.84013 6.04214 6.12408 6.16167 6.26954 6.41362 6.69199 6.97835 7.02049 7.10617 7.17785 7.66433 8.43598 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.002089 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.142518 B =13403.286252 C =14492.962072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.365 6.365 3 C 0.638 3.362 4 O -0.616 6.616 5 N -0.587 5.587 6 C 0.104 3.896 7 C -0.127 4.127 8 C -0.117 4.117 9 C 0.155 3.845 10 H 0.052 0.948 11 N -0.717 5.717 12 C 0.691 3.309 13 O -0.624 6.624 14 N -0.656 5.656 15 C 0.043 3.957 16 C -0.117 4.117 17 C -0.157 4.157 18 C 0.066 3.934 19 C -0.500 4.500 20 H 0.070 0.930 21 C 0.027 3.973 22 N -0.841 5.841 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.266 1.266 26 H -0.268 1.268 27 C -0.222 4.222 28 C -0.099 4.099 29 C 0.119 3.881 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.419 0.581 40 H 0.417 0.583 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.052 0.948 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -25.293 12.616 28.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.278 6.278 3 C 0.393 3.607 4 O -0.508 6.508 5 N -0.328 5.328 6 C -0.016 4.016 7 C -0.165 4.165 8 C -0.155 4.155 9 C 0.049 3.951 10 H 0.071 0.929 11 N -0.375 5.375 12 C 0.391 3.609 13 O -0.504 6.504 14 N -0.304 5.304 15 C -0.052 4.052 16 C -0.138 4.138 17 C -0.177 4.177 18 C 0.063 3.937 19 C -0.530 4.530 20 H 0.088 0.912 21 C -0.184 4.184 22 N -0.469 5.469 23 Si 0.809 3.191 24 H -0.182 1.182 25 H -0.190 1.190 26 H -0.193 1.193 27 C -0.242 4.242 28 C -0.120 4.120 29 C -0.004 4.004 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.257 0.743 40 H 0.254 0.746 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.119 0.881 46 H 0.071 0.929 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.635 -25.082 11.961 28.025 hybrid contribution -0.336 1.138 -0.350 1.237 sum 3.300 -23.944 11.611 26.815 Atomic orbital electron populations 1.23502 0.73052 1.05795 1.02185 1.86211 1.25473 1.29302 1.86798 1.18394 0.83974 0.82209 0.76148 1.91021 1.65443 1.36719 1.57592 1.46967 1.01410 1.09359 1.75036 1.22157 0.93910 0.84832 1.00730 1.21924 0.98198 0.98558 0.97860 1.21838 0.97181 0.91131 1.05339 1.21089 0.92772 0.83932 0.97345 0.92942 1.44769 1.23511 1.06906 1.62290 1.16286 0.83877 0.81210 0.79503 1.90936 1.23004 1.85212 1.51271 1.41835 1.26130 1.07239 1.55176 1.17062 0.92266 0.90076 1.05759 1.20537 0.98399 0.95774 0.99064 1.21174 0.95854 0.98908 1.01775 1.18022 0.92305 0.92794 0.90560 1.19670 1.12738 1.09741 1.10899 0.91164 1.26726 0.94118 0.99823 0.97772 1.69817 1.15540 1.38844 1.22718 0.85161 0.78732 0.77448 0.77738 1.18186 1.19047 1.19253 1.20910 0.97980 0.96859 1.08478 1.20499 0.94881 0.96142 1.00428 1.22019 0.95139 0.83223 1.00055 0.92261 0.92994 0.83795 0.88002 0.88133 0.86079 0.92795 0.89612 0.87708 0.74340 0.74581 0.85307 0.86088 0.90465 0.89148 0.88119 0.92947 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 10.56 113.37 1.20 1.97 16 2 O -0.36 -7.65 9.20 -55.49 -0.51 -8.16 16 3 C 0.64 17.71 8.43 129.79 1.09 18.80 16 4 O -0.62 -23.29 15.54 19.80 0.31 -22.99 16 5 N -0.59 -12.41 2.97 -949.15 -2.82 -15.23 16 6 C 0.10 1.09 6.45 86.36 0.56 1.64 16 7 C -0.13 -1.05 6.08 30.67 0.19 -0.86 16 8 C -0.12 -1.13 5.35 30.62 0.16 -0.97 16 9 C 0.16 3.26 2.61 45.09 0.12 3.38 16 10 H 0.05 1.57 7.58 -2.39 -0.02 1.55 16 11 N -0.72 -15.57 5.09 -457.36 -2.33 -17.89 16 12 C 0.69 24.07 8.36 179.06 1.50 25.57 16 13 O -0.62 -29.36 13.42 -3.99 -0.05 -29.42 16 14 N -0.66 -22.04 5.31 -316.78 -1.68 -23.72 16 15 C 0.04 1.92 6.31 38.56 0.24 2.16 16 16 C -0.12 -5.33 9.90 22.13 0.22 -5.11 16 17 C -0.16 -8.38 8.62 22.48 0.19 -8.19 16 18 C 0.07 3.76 5.55 -21.27 -0.12 3.65 16 19 C -0.50 -28.49 9.02 23.39 0.21 -28.27 16 20 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 21 C 0.03 1.44 5.42 85.24 0.46 1.90 16 22 N -0.84 -45.36 10.60 21.82 0.23 -45.13 16 23 Si 0.99 40.40 29.56 68.60 2.03 42.42 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 27 C -0.22 -12.32 9.74 22.48 0.22 -12.10 16 28 C -0.10 -5.12 8.61 22.13 0.19 -4.93 16 29 C 0.12 2.78 6.01 86.38 0.52 3.30 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 0.97 6.93 -2.38 -0.02 0.95 16 35 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 36 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.42 5.19 8.62 -92.71 -0.80 4.39 16 40 H 0.42 9.80 8.83 -92.71 -0.82 8.98 16 41 H 0.13 4.79 8.06 -2.92 -0.02 4.76 16 42 H 0.12 6.66 6.13 -2.91 -0.02 6.65 16 43 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 44 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 45 H 0.10 5.35 6.22 -2.91 -0.02 5.33 16 46 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 47 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -85.23 386.87 1.53 -83.70 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.60 Total: 34.47 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.95 Total: 1.94 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -6.60 Total: -101.97 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.26 Total: -60.56 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -85.23 1.53 -83.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726694888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.970 kcal (2) G-P(sol) polarization free energy of solvation -85.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds