Wall clock time and date at job start Wed Apr 1 2020 04:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00246 * 2 1 4 4 N 1.46501 * 109.47115 * 79.16776 * 3 2 1 5 5 C 1.34567 * 119.77611 * 254.43019 * 4 3 2 6 6 O 1.21292 * 119.62222 * 0.80303 * 5 4 3 7 7 C 1.50469 * 120.74912 * 180.82780 * 5 4 3 8 8 C 1.52896 * 109.91800 * 324.72574 * 7 5 4 9 9 C 1.50676 * 109.52667 * 48.66559 * 8 7 5 10 10 C 1.38041 * 120.12368 * 146.06136 * 9 8 7 11 11 C 1.38851 * 119.97733 * 179.97438 * 10 9 8 12 12 N 1.40108 * 120.00156 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99819 * 33.57914 * 12 11 10 14 14 O 1.21589 * 120.00282 * 4.72427 * 13 12 11 15 15 N 1.34780 * 119.99733 * 184.72959 * 13 12 11 16 16 C 1.46502 * 119.99727 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.46945 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47526 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99651 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00608 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00272 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47085 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47251 * 119.99656 * 22 20 18 25 25 H 1.48502 * 109.46978 * 240.00263 * 22 20 18 26 26 C 1.38879 * 119.99817 * 0.02562 * 11 10 9 27 27 C 1.38044 * 120.01624 * 359.97438 * 26 11 10 28 28 C 1.38858 * 119.83662 * 326.04640 * 9 8 7 29 29 H 1.09003 * 109.46937 * 54.84153 * 1 2 3 30 30 H 1.08997 * 109.47249 * 174.83729 * 1 2 3 31 31 H 1.08999 * 109.47504 * 294.84313 * 1 2 3 32 32 H 1.09000 * 109.46777 * 319.16583 * 3 2 1 33 33 H 1.08995 * 109.47063 * 199.16554 * 3 2 1 34 34 H 1.08998 * 109.37500 * 204.59964 * 7 5 4 35 35 H 1.09007 * 109.41290 * 84.87389 * 7 5 4 36 36 H 1.08997 * 109.45896 * 288.65636 * 8 7 5 37 37 H 1.08996 * 109.46341 * 168.67989 * 8 7 5 38 38 H 1.07999 * 120.00990 * 359.96045 * 10 9 8 39 39 H 0.97000 * 120.00105 * 213.57449 * 12 11 10 40 40 H 0.96996 * 120.00054 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.47125 * 299.99928 * 16 15 13 42 42 H 1.09001 * 109.46823 * 60.00146 * 16 15 13 43 43 H 1.09007 * 109.47416 * 299.99905 * 17 16 15 44 44 H 1.08999 * 109.47579 * 60.00110 * 17 16 15 45 45 H 0.97000 * 119.99701 * 179.97438 * 21 20 18 46 46 H 1.08001 * 119.99304 * 180.02562 * 26 11 10 47 47 H 1.07996 * 120.00487 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 1.9718 1.8571 1.3566 5 6 1.0829 2.8203 1.6613 6 8 0.3105 3.2135 0.8128 7 6 1.0367 3.4155 3.0426 8 6 1.3531 2.3412 4.0835 9 6 2.5952 1.5932 3.6736 10 6 3.4685 1.1220 4.6333 11 6 4.6119 0.4326 4.2522 12 7 5.4989 -0.0454 5.2257 13 6 5.0292 -0.4655 6.4172 14 8 3.8307 -0.5106 6.6165 15 7 5.8882 -0.8354 7.3877 16 6 5.3777 -1.2914 8.6829 17 6 6.5517 -1.6486 9.5966 18 6 6.0267 -2.1184 10.9288 19 1 4.9620 -2.1577 11.1062 20 6 6.9053 -2.4969 11.9216 21 7 8.2018 -2.4485 11.7058 22 14 6.2545 -3.0784 13.5731 23 1 4.7700 -3.0398 13.5616 24 1 6.7119 -4.4688 13.8237 25 1 6.7639 -2.1884 14.6472 26 6 4.8770 0.2178 2.9059 27 6 4.0036 0.6891 1.9464 28 6 2.8597 1.3784 2.3275 29 1 -0.3633 0.5918 -0.8402 30 1 -0.3633 -1.0235 -0.0925 31 1 -0.3634 0.4317 0.9325 32 1 1.4477 1.9536 -0.6720 33 1 3.0448 1.2425 -0.3374 34 1 0.0414 3.8187 3.2295 35 1 1.7706 4.2181 3.1160 36 1 0.5168 1.6457 4.1533 37 1 1.5160 2.8118 5.0531 38 1 3.2625 1.2897 5.6801 39 1 6.4510 -0.0742 5.0423 40 1 6.8444 -0.7996 7.2285 41 1 4.7886 -0.4971 9.1413 42 1 4.7506 -2.1710 8.5370 43 1 7.1405 -2.4432 9.1380 44 1 7.1792 -0.7694 9.7426 45 1 8.8199 -2.7144 12.4044 46 1 5.7662 -0.3188 2.6096 47 1 4.2096 0.5216 0.8996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801782249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:19 Heat of formation + Delta-G solvation = -105.500903 kcal Electronic energy + Delta-G solvation = -29767.574122 eV Core-core repulsion = 25528.319385 eV Total energy + Delta-G solvation = -4239.254737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.35874 -41.42081 -39.66545 -38.80519 -37.19353 -36.37951 -35.21184 -34.94375 -34.55831 -31.60980 -31.08718 -29.47325 -28.77538 -26.76524 -26.60199 -25.28564 -24.12133 -22.97802 -22.80168 -21.89150 -20.35524 -19.49316 -18.91688 -18.46629 -18.26684 -18.12667 -17.64676 -16.85549 -16.63676 -16.49173 -16.42845 -16.15005 -15.81618 -15.56844 -15.24097 -15.11977 -14.97362 -14.85581 -14.48661 -14.28554 -14.24174 -13.95478 -13.48770 -13.19769 -13.08249 -12.96366 -12.86978 -12.72270 -12.50473 -12.45078 -12.25261 -11.98984 -11.88971 -11.65195 -11.56277 -11.46505 -11.18849 -10.87025 -10.59913 -10.55509 -10.00057 -9.76318 -8.59164 -8.23143 -6.32715 0.13151 0.37858 1.31139 1.41888 1.43204 1.55160 1.60575 1.71651 2.07637 2.42005 2.69790 2.86619 3.12114 3.22915 3.33903 3.65579 3.74280 3.94291 4.04010 4.07300 4.22731 4.26935 4.31768 4.35313 4.39632 4.45673 4.52147 4.54110 4.71010 4.73489 4.79599 4.83978 4.89214 4.90814 5.04472 5.10060 5.28747 5.34248 5.47806 5.50275 5.54698 5.61582 5.78950 5.80707 5.93946 6.02424 6.18398 6.24488 6.75385 6.80885 7.03631 7.36542 7.50842 8.88790 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023171 B = 0.001802 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.099618 B =15532.836839 C =15900.742942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.398 6.398 3 C 0.256 3.744 4 N -0.561 5.561 5 C 0.517 3.483 6 O -0.561 6.561 7 C -0.131 4.131 8 C -0.075 4.075 9 C -0.107 4.107 10 C -0.105 4.105 11 C 0.140 3.860 12 N -0.672 5.672 13 C 0.698 3.302 14 O -0.617 6.617 15 N -0.726 5.726 16 C 0.160 3.840 17 C 0.023 3.977 18 C -0.544 4.544 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.277 1.277 26 C -0.112 4.112 27 C -0.116 4.116 28 C 0.130 3.870 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.023 0.977 32 H 0.092 0.908 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.424 0.576 40 H 0.409 0.591 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.265 0.735 46 H 0.160 0.840 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 10.678 -25.673 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C 0.098 3.902 4 N -0.294 5.294 5 C 0.309 3.691 6 O -0.440 6.440 7 C -0.170 4.170 8 C -0.112 4.112 9 C -0.110 4.110 10 C -0.126 4.126 11 C 0.044 3.956 12 N -0.321 5.321 13 C 0.398 3.602 14 O -0.497 6.497 15 N -0.381 5.381 16 C 0.036 3.964 17 C -0.015 4.015 18 C -0.582 4.582 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.565 5.565 22 Si 0.788 3.212 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.133 4.133 27 C -0.136 4.136 28 C 0.037 3.963 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.263 0.737 40 H 0.245 0.755 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.178 0.822 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.525 10.600 -25.878 29.543 hybrid contribution 0.572 -0.296 1.105 1.278 sum -8.953 10.304 -24.774 28.286 Atomic orbital electron populations 1.22858 0.80045 1.03639 0.99913 1.88022 1.21213 1.28516 1.93440 1.23161 1.01906 0.83338 0.81836 1.46317 1.33776 1.36558 1.12726 1.21305 0.78054 0.78267 0.91457 1.90709 1.40426 1.61537 1.51321 1.21737 1.06961 0.99498 0.88820 1.20431 0.94479 0.96512 0.99802 1.19489 0.98148 1.02387 0.90973 1.20819 0.94682 0.97514 0.99547 1.17678 0.92495 0.96955 0.88446 1.42435 1.10991 1.66238 1.12471 1.16113 0.85174 0.78085 0.80822 1.90893 1.15274 1.61952 1.81630 1.45223 1.09727 1.69664 1.13444 1.21111 0.97087 0.97476 0.80700 1.19141 0.93036 0.96027 0.93295 1.21491 0.93480 1.44360 0.98895 0.92282 1.25848 0.95074 0.95591 1.02703 1.70058 1.02476 1.48872 1.35140 0.85419 0.78810 0.77957 0.78996 1.18981 1.20350 1.20310 1.20933 1.01872 1.01144 0.89378 1.20810 0.92142 0.99662 1.00987 1.17674 0.91493 0.99841 0.87335 0.92673 0.88101 0.95793 0.88963 0.83704 0.86088 0.86135 0.90455 0.87868 0.86117 0.73747 0.75470 0.93436 0.93680 0.97194 0.97116 0.92595 0.82207 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.92 113.37 1.24 1.76 16 2 O -0.40 -7.30 10.92 -148.98 -1.63 -8.93 16 3 C 0.26 3.83 5.99 127.77 0.76 4.60 16 4 N -0.56 -10.09 2.90 -748.69 -2.17 -12.26 16 5 C 0.52 10.15 7.40 87.62 0.65 10.80 16 6 O -0.56 -13.83 16.41 -3.07 -0.05 -13.88 16 7 C -0.13 -1.88 6.07 29.74 0.18 -1.70 16 8 C -0.08 -1.27 6.00 29.81 0.18 -1.09 16 9 C -0.11 -2.25 5.66 -19.77 -0.11 -2.36 16 10 C -0.10 -2.62 8.29 22.37 0.19 -2.43 16 11 C 0.14 3.13 6.28 38.12 0.24 3.37 16 12 N -0.67 -15.14 5.35 -317.05 -1.70 -16.83 16 13 C 0.70 22.32 8.31 179.05 1.49 23.81 16 14 O -0.62 -24.69 14.02 -4.00 -0.06 -24.74 16 15 N -0.73 -23.52 5.56 -478.54 -2.66 -26.18 16 16 C 0.16 6.62 5.61 86.38 0.48 7.10 16 17 C 0.02 1.10 5.09 29.84 0.15 1.25 16 18 C -0.54 -29.71 9.11 25.60 0.23 -29.47 16 19 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 20 C 0.01 0.36 5.46 84.65 0.46 0.82 16 21 N -0.93 -53.27 13.29 21.45 0.28 -52.99 16 22 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.11 -1.82 9.96 22.38 0.22 -1.60 16 27 C -0.12 -1.80 9.31 22.38 0.21 -1.59 16 28 C 0.13 2.46 6.32 38.14 0.24 2.70 16 29 H 0.05 0.81 7.99 -2.39 -0.02 0.79 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.02 0.46 8.08 -2.39 -0.02 0.44 16 32 H 0.09 1.42 6.73 -2.39 -0.02 1.40 16 33 H 0.15 1.27 6.49 -2.39 -0.02 1.25 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.54 8.06 -2.39 -0.02 1.52 16 38 H 0.12 3.60 6.41 -2.91 -0.02 3.58 16 39 H 0.42 6.31 8.83 -92.71 -0.82 5.49 16 40 H 0.41 10.90 8.49 -92.71 -0.79 10.11 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.16 1.57 6.29 -2.91 -0.02 1.56 16 Total: -1.00 -73.78 391.70 0.28 -73.50 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.58 Total: 21.30 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 6.82 Total: 15.97 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -6.24 Total: -108.26 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.73 Total: -47.55 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -73.78 0.28 -73.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801782249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.004 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds