Wall clock time and date at job start Wed Apr 1 2020 04:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 O 1.42105 * 110.54405 * 2 1 4 4 O 1.42102 * 110.54437 * 223.25179 * 2 1 3 5 5 N 1.65594 * 104.45223 * 111.62581 * 2 1 3 6 6 C 1.46929 * 120.63261 * 90.00157 * 5 2 1 7 7 C 1.53196 * 108.77486 * 233.63338 * 6 5 2 8 8 C 1.53035 * 109.30995 * 305.36045 * 7 6 5 9 9 C 1.53042 * 109.54021 * 61.36728 * 8 7 6 10 10 H 1.09006 * 109.49541 * 58.58370 * 9 8 7 11 11 C 1.52994 * 109.49646 * 178.67720 * 9 8 7 12 12 O 1.45196 * 109.47691 * 294.99908 * 11 9 8 13 13 C 1.34235 * 117.00004 * 180.02562 * 12 11 9 14 14 O 1.20817 * 119.99981 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99707 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47079 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.47302 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47197 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.46973 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00095 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99868 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99976 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00100 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47147 * 59.99935 * 23 21 19 25 25 H 1.48491 * 109.47150 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47101 * 299.99870 * 23 21 19 27 27 C 1.46924 * 120.63330 * 270.02217 * 5 2 1 28 28 H 1.08999 * 109.47166 * 308.37209 * 1 2 3 29 29 H 1.08999 * 109.47237 * 68.37453 * 1 2 3 30 30 H 1.09007 * 109.47378 * 188.37531 * 1 2 3 31 31 H 1.08998 * 109.59209 * 113.84153 * 6 5 2 32 32 H 1.09003 * 109.58217 * 353.41434 * 6 5 2 33 33 H 1.09001 * 109.49651 * 65.31212 * 7 6 5 34 34 H 1.09001 * 109.49244 * 185.40784 * 7 6 5 35 35 H 1.09004 * 109.45792 * 181.38956 * 8 7 6 36 36 H 1.09003 * 109.46450 * 301.35739 * 8 7 6 37 37 H 1.09000 * 109.47221 * 55.00899 * 11 9 8 38 38 H 1.09008 * 109.46880 * 174.99594 * 11 9 8 39 39 H 1.09000 * 109.47521 * 300.00268 * 15 13 12 40 40 H 1.09004 * 109.47488 * 59.99926 * 15 13 12 41 41 H 1.08997 * 109.47546 * 300.00108 * 16 15 13 42 42 H 1.09000 * 109.47090 * 60.00182 * 16 15 13 43 43 H 1.08997 * 109.47163 * 300.00654 * 17 16 15 44 44 H 1.09000 * 109.46631 * 60.00777 * 17 16 15 45 45 H 1.09000 * 109.47565 * 300.00981 * 18 17 16 46 46 H 1.09004 * 109.46277 * 60.00489 * 18 17 16 47 47 H 0.96997 * 120.00258 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.58511 * 6.58033 * 27 5 2 49 49 H 1.09005 * 109.70744 * 246.22578 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 2.4141 -2.0334 1.6987 7 6 1.5304 -2.4817 2.8671 8 6 1.8424 -1.6239 4.0955 9 6 1.5300 -0.1575 3.7886 10 1 0.4808 -0.0597 3.5095 11 6 1.8109 0.6946 5.0279 12 8 0.8942 0.3211 6.0901 13 6 1.0091 0.9801 7.2539 14 8 1.8475 1.8407 7.3806 15 6 0.0922 0.6464 8.4024 16 6 0.4316 1.5351 9.6007 17 6 -0.4997 1.1967 10.7666 18 6 -0.1599 2.0850 11.9651 19 6 -1.0768 1.7513 13.1136 20 1 -1.8265 0.9823 13.0001 21 6 -0.9585 2.4278 14.3092 22 7 -0.0451 3.3639 14.4474 23 14 -2.0954 2.0146 15.7326 24 1 -1.9201 0.5887 16.1083 25 1 -1.7655 2.8767 16.8958 26 1 -3.5040 2.2497 15.3253 27 6 2.4135 0.3170 2.6306 28 1 -0.3633 0.6379 0.8057 29 1 -0.3633 0.3787 -0.9553 30 1 -0.3634 -1.0168 0.1497 31 1 3.4592 -2.2367 1.9319 32 1 2.1274 -2.5729 0.7959 33 1 0.4813 -2.3619 2.5966 34 1 1.7310 -3.5288 3.0939 35 1 1.2325 -1.9571 4.9353 36 1 2.8974 -1.7246 4.3504 37 1 2.8365 0.5289 5.3579 38 1 1.6738 1.7480 4.7832 39 1 -0.9418 0.8180 8.1036 40 1 0.2217 -0.4001 8.6784 41 1 1.4656 1.3630 9.8994 42 1 0.3024 2.5817 9.3249 43 1 -1.5336 1.3690 10.4675 44 1 -0.3709 0.1501 11.0425 45 1 0.8740 1.9123 12.2639 46 1 -0.2884 3.1317 11.6894 47 1 0.0379 3.8401 15.2884 48 1 2.1267 1.3284 2.3428 49 1 3.4585 0.3079 2.9408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:16 Heat of formation + Delta-G solvation = -187.697042 kcal Electronic energy + Delta-G solvation = -28011.704294 eV Core-core repulsion = 23872.036466 eV Total energy + Delta-G solvation = -4139.667829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.59924 -39.22574 -37.70013 -36.74729 -36.46418 -35.00203 -33.48519 -32.69432 -32.30456 -30.03980 -29.98604 -27.16872 -25.67686 -25.08156 -23.01607 -22.42594 -20.76430 -20.58994 -20.05151 -19.36256 -18.28545 -17.57837 -16.87610 -16.79832 -16.63009 -16.25757 -16.14336 -15.34728 -15.15018 -14.94321 -14.53789 -14.39783 -14.31845 -14.12428 -13.80726 -13.74028 -13.16941 -13.12898 -12.93770 -12.67167 -12.60798 -12.45155 -12.39265 -12.24391 -11.78761 -11.74303 -11.69107 -11.65788 -11.36103 -11.12238 -11.07354 -11.01545 -10.68213 -10.60733 -10.58626 -10.48498 -10.40215 -9.67233 -9.58716 -9.30466 -9.04944 -8.32905 -5.97782 -4.00583 -0.31692 1.98033 2.25586 2.58392 3.32183 3.33746 3.38376 3.40416 3.55591 3.88959 4.18353 4.20580 4.29191 4.37000 4.46649 4.48742 4.51365 4.70844 4.78789 4.86785 4.93572 5.04214 5.10522 5.15363 5.19291 5.23894 5.26509 5.28039 5.37598 5.39962 5.49793 5.62761 5.68545 5.75255 5.83525 5.94515 6.02678 6.16520 6.35994 6.44823 6.73948 6.92143 7.13822 7.70080 7.78154 7.85018 8.02693 8.44313 9.06721 9.63213 11.13427 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.001436 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.788643 B =19487.937568 C =19714.110582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.610 3.390 3 O -0.953 6.953 4 O -0.954 6.954 5 N -0.997 5.997 6 C 0.119 3.881 7 C -0.136 4.136 8 C -0.114 4.114 9 C -0.103 4.103 10 H 0.087 0.913 11 C 0.069 3.931 12 O -0.360 6.360 13 C 0.460 3.540 14 O -0.504 6.504 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.110 4.110 18 C 0.020 3.980 19 C -0.522 4.522 20 H 0.054 0.946 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.127 3.873 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.261 0.739 48 H 0.095 0.905 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 -12.339 -32.188 34.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.703 3.297 3 O -0.943 6.943 4 O -0.945 6.945 5 N -0.834 5.834 6 C -0.006 4.006 7 C -0.175 4.175 8 C -0.151 4.151 9 C -0.123 4.123 10 H 0.105 0.895 11 C -0.006 4.006 12 O -0.277 6.277 13 C 0.303 3.697 14 O -0.391 6.391 15 C -0.149 4.149 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.017 4.017 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.002 3.998 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.114 0.886 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.145 -11.676 -32.750 34.912 hybrid contribution -1.215 -0.174 1.163 1.691 sum 1.930 -11.851 -31.588 33.793 Atomic orbital electron populations 1.30595 1.28550 1.11695 1.11555 1.04972 0.77747 0.74057 0.72961 1.93627 1.77522 1.37644 1.85508 1.93614 1.77597 1.61716 1.61533 1.57726 1.84350 1.14591 1.26755 1.21506 1.00947 0.78740 0.99447 1.21958 1.00141 1.00139 0.95254 1.21533 1.02368 0.93173 0.98049 1.21584 1.01497 0.96120 0.93149 0.89469 1.22924 0.93142 0.99153 0.85360 1.86493 1.57366 1.61301 1.22561 1.24208 0.83665 0.78758 0.83093 1.90681 1.35103 1.30914 1.82382 1.21604 0.98615 1.03581 0.91074 1.21579 1.01284 0.98841 0.92934 1.21651 0.97357 1.00550 0.95191 1.19096 0.96927 0.94622 0.91079 1.21233 1.17614 1.19916 0.97304 0.92748 1.25040 0.95597 0.95152 0.98741 1.69960 1.33738 1.23934 1.25777 0.86657 0.81184 0.78268 0.81858 1.20283 1.21316 1.20283 1.21324 1.00652 0.92716 0.85138 0.85244 0.85401 0.85325 0.90596 0.89036 0.91417 0.90281 0.90444 0.91462 0.90837 0.90877 0.87926 0.87916 0.91539 0.91548 0.93218 0.93217 0.96540 0.96545 0.92962 0.88628 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.81 10.99 101.05 1.11 -0.70 16 2 S 2.61 15.63 6.05 -107.50 -0.65 14.98 16 3 O -0.95 -9.08 16.73 -57.54 -0.96 -10.04 16 4 O -0.95 -8.63 16.72 -57.54 -0.96 -9.59 16 5 N -1.00 -5.16 3.22 -113.52 -0.37 -5.52 16 6 C 0.12 0.51 6.31 -3.71 -0.02 0.48 16 7 C -0.14 -0.51 6.08 -26.61 -0.16 -0.67 16 8 C -0.11 -0.60 5.08 -26.69 -0.14 -0.73 16 9 C -0.10 -0.59 2.58 -90.50 -0.23 -0.82 16 10 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 11 C 0.07 0.58 4.84 37.15 0.18 0.76 16 12 O -0.36 -3.82 9.74 -39.27 -0.38 -4.20 16 13 C 0.46 6.06 7.96 36.00 0.29 6.35 16 14 O -0.50 -8.30 15.73 -18.74 -0.29 -8.60 16 15 C -0.11 -1.39 5.81 -27.89 -0.16 -1.55 16 16 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 17 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 18 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 19 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 20 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 23 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.13 0.69 5.60 -3.71 -0.02 0.67 16 28 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 30 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.33 7.10 -51.93 -0.37 -0.03 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 38 H 0.07 0.61 8.13 -51.92 -0.42 0.19 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 42 H 0.07 1.18 8.10 -51.93 -0.42 0.75 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.10 0.49 7.10 -51.93 -0.37 0.12 16 49 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -37.19 409.43 -10.41 -47.60 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -8.71 Total: -7.33 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 0.03 Total: -13.68 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.37 Total: -31.92 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -2.60 Total: -32.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 15.63 SS G_CDS: -0.65 Total: 14.98 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.19 -10.41 -47.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.096 kcal (2) G-P(sol) polarization free energy of solvation -37.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds