Wall clock time and date at job start Wed Apr 1 2020 04:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46867 * 2 1 4 4 C 1.52996 * 109.47115 * 240.00255 * 2 1 3 5 5 C 1.50706 * 109.47217 * 60.00208 * 4 2 1 6 6 H 1.07999 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00249 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00228 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99742 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47108 * 90.00597 * 9 7 5 11 11 H 1.48497 * 109.47070 * 210.00134 * 9 7 5 12 12 H 1.48497 * 109.47113 * 330.00253 * 9 7 5 13 13 C 1.52998 * 109.47296 * 119.99891 * 2 1 3 14 14 N 1.46496 * 109.47517 * 300.00355 * 13 2 1 15 15 C 1.34776 * 120.00221 * 179.97438 * 14 13 2 16 16 O 1.21586 * 119.99937 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00045 * 180.02562 * 15 14 13 18 18 N 1.36607 * 119.99771 * 359.97438 * 17 15 14 19 19 C 1.46901 * 110.99672 * 180.02562 * 18 17 15 20 20 C 1.53004 * 108.89042 * 300.70137 * 19 18 17 21 21 C 1.52378 * 108.92525 * 182.03519 * 19 18 17 22 22 C 1.54211 * 112.29419 * 239.25394 * 21 19 18 23 23 S 1.83825 * 102.86011 * 25.04461 * 22 21 19 24 24 O 1.42098 * 109.81024 * 77.68519 * 23 22 21 25 25 O 1.42104 * 109.81011 * 212.03118 * 23 22 21 26 26 C 1.54207 * 108.92698 * 59.36842 * 19 18 17 27 27 H 1.08993 * 109.46830 * 299.99624 * 1 2 3 28 28 H 1.08995 * 109.47248 * 59.99966 * 1 2 3 29 29 H 1.08995 * 109.46633 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47352 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47677 * 300.00612 * 3 2 1 32 32 H 1.09004 * 109.47440 * 60.00182 * 3 2 1 33 33 H 1.08997 * 109.47066 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47365 * 299.99991 * 4 2 1 35 35 H 0.96995 * 120.00062 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47374 * 179.97438 * 13 2 1 37 37 H 1.09008 * 109.46865 * 60.00382 * 13 2 1 38 38 H 0.97001 * 119.99609 * 0.02562 * 14 13 2 39 39 H 0.96995 * 120.00267 * 180.02562 * 17 15 14 40 40 H 1.00901 * 110.99866 * 56.05216 * 18 17 15 41 41 H 1.09001 * 109.47434 * 59.30394 * 20 19 18 42 42 H 1.09005 * 109.47145 * 179.30307 * 20 19 18 43 43 H 1.09002 * 109.47147 * 299.30127 * 20 19 18 44 44 H 1.09007 * 108.92542 * 359.97438 * 21 19 18 45 45 H 1.08993 * 108.92796 * 118.51149 * 21 19 18 46 46 H 1.09002 * 110.73301 * 143.38527 * 22 21 19 47 47 H 1.08997 * 110.73494 * 266.52125 * 22 21 19 48 48 H 1.08995 * 110.73710 * 214.03858 * 26 19 18 49 49 H 1.08999 * 110.73896 * 337.36089 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0107 -2.4797 6 1 0.9165 0.8672 -2.3806 7 6 1.8704 -0.4819 -3.7320 8 7 1.4316 0.1378 -4.8058 9 14 2.9443 -2.0008 -3.9034 10 1 2.0857 -3.2116 -3.9485 11 1 3.7358 -1.9085 -5.1565 12 1 3.8650 -2.0897 -2.7418 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4915 3.6695 16 8 2.5753 -1.4806 3.7810 17 7 1.4273 0.1435 4.7700 18 7 0.6423 1.2544 4.6446 19 6 0.2669 1.7851 5.9620 20 6 -0.4938 0.7043 6.7330 21 6 -0.6466 2.9891 5.7679 22 6 -0.0661 4.2714 6.3978 23 16 1.7420 3.9401 6.4078 24 8 2.2744 4.1338 5.1047 25 8 2.3419 4.5759 7.5282 26 6 1.5487 2.1457 6.7398 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6768 -1.7488 -1.2493 35 1 1.6660 -0.1935 -5.6868 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7490 1.2492 38 1 0.9938 0.7577 2.3564 39 1 1.6616 -0.1879 5.6509 40 1 -0.1755 1.0583 4.0871 41 1 0.1396 -0.1756 6.8456 42 1 -0.7664 1.0842 7.7177 43 1 -1.3965 0.4344 6.1850 44 1 -0.7915 3.1544 4.7002 45 1 -1.6131 2.7770 6.2249 46 1 -0.2956 5.1415 5.7826 47 1 -0.4419 4.4075 7.4118 48 1 1.4172 1.9634 7.8063 49 1 2.4033 1.5895 6.3546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807591486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:36 Heat of formation + Delta-G solvation = -67.620714 kcal Electronic energy + Delta-G solvation = -29924.498810 eV Core-core repulsion = 25822.330633 eV Total energy + Delta-G solvation = -4102.168177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.71932 -39.05229 -37.38828 -37.20089 -36.33822 -35.26868 -33.47923 -32.03559 -31.27574 -29.20647 -28.38382 -27.74678 -26.49255 -26.11369 -24.75219 -22.59292 -20.84469 -20.73584 -19.38113 -18.95643 -18.06426 -17.67460 -16.91702 -16.84951 -16.61260 -16.33271 -15.73996 -15.31870 -15.00621 -14.59241 -14.47775 -14.31571 -13.98913 -13.75877 -13.63926 -13.42588 -13.32517 -13.14086 -12.65690 -12.65337 -12.44742 -12.36898 -12.35962 -12.34919 -12.22396 -11.73856 -11.37757 -11.20036 -11.09390 -10.99169 -10.96073 -10.64303 -10.56997 -10.42966 -10.28111 -9.91823 -9.71744 -9.48049 -8.95496 -8.84599 -8.50419 -8.31855 -6.01210 -3.98109 -0.37995 2.02083 2.40934 3.06091 3.16263 3.33998 3.38512 3.42231 3.46896 3.51036 3.72574 3.85295 3.96481 4.26546 4.33937 4.43752 4.48726 4.71619 4.83167 4.93117 4.97406 5.06557 5.14271 5.31277 5.31830 5.40775 5.45383 5.59210 5.70038 5.86952 6.14716 6.21009 6.22992 6.39413 6.54648 6.66235 6.76785 6.90118 6.95094 7.05441 7.07564 7.12471 7.24971 7.41535 7.81702 8.17335 8.56081 8.65871 9.03305 9.61756 11.11584 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.002462 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.051096 B =11371.281218 C =11875.752547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.062 4.062 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.509 4.509 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.141 3.859 14 N -0.724 5.724 15 C 0.713 3.287 16 O -0.593 6.593 17 N -0.598 5.598 18 N -0.439 5.439 19 C 0.105 3.895 20 C -0.178 4.178 21 C -0.112 4.112 22 C -0.577 4.577 23 S 2.388 3.612 24 O -0.905 6.905 25 O -0.941 6.941 26 C -0.584 4.584 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.019 0.981 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.402 0.598 39 H 0.411 0.589 40 H 0.343 0.657 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.141 0.859 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 6.487 28.104 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.547 4.547 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.189 1.189 13 C 0.018 3.982 14 N -0.380 5.380 15 C 0.413 3.587 16 O -0.468 6.468 17 N -0.353 5.353 18 N -0.169 5.169 19 C 0.012 3.988 20 C -0.238 4.238 21 C -0.151 4.151 22 C -0.707 4.707 23 S 2.569 3.431 24 O -0.902 6.902 25 O -0.938 6.938 26 C -0.713 4.713 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.238 0.762 39 H 0.254 0.746 40 H 0.164 0.836 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.159 0.841 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.982 6.767 27.545 28.988 hybrid contribution -1.123 -1.748 0.518 2.141 sum -7.105 5.019 28.063 29.380 Atomic orbital electron populations 1.21763 0.94946 1.01060 1.00679 1.20690 0.95707 0.96112 0.93770 1.21772 1.00567 0.95390 1.00922 1.19593 0.96367 0.95426 0.92616 1.21086 1.31722 1.13290 0.88598 0.90362 1.24996 0.95713 0.96753 0.95996 1.69901 1.46028 1.40614 0.97864 0.86862 0.81364 0.83897 0.77665 1.20451 1.21559 1.18933 1.21545 0.98885 0.95523 0.82283 1.45290 1.55622 1.32984 1.04146 1.15718 0.80393 0.82177 0.80449 1.90978 1.43345 1.27469 1.85042 1.44775 1.53341 1.28576 1.08593 1.62491 1.21978 1.18569 1.13817 1.21339 0.92223 0.96740 0.88461 1.22652 1.00742 0.98737 1.01637 1.21652 0.99689 0.89279 1.04523 1.30361 1.24929 1.05253 1.10123 1.09317 0.79090 0.78922 0.75732 1.93710 1.75539 1.83523 1.37448 1.93623 1.74407 1.72676 1.53080 1.30635 1.05153 1.26711 1.08777 0.95140 0.90895 0.93532 0.93391 0.91018 0.94568 0.96300 0.96864 0.92838 0.91880 0.92055 0.76186 0.74638 0.83612 0.91518 0.90588 0.91146 0.87821 0.88218 0.84126 0.84573 0.83856 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.61 8.20 -34.44 -0.28 -13.90 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.14 2.39 4.56 -4.05 -0.02 2.37 16 14 N -0.72 -10.13 4.89 -65.23 -0.32 -10.45 16 15 C 0.71 10.17 8.63 -86.92 -0.75 9.42 16 16 O -0.59 -10.92 17.18 5.29 0.09 -10.83 16 17 N -0.60 -5.68 4.80 27.63 0.13 -5.55 16 18 N -0.44 -3.08 5.61 1.00 0.01 -3.07 16 19 C 0.10 0.44 0.81 -131.29 -0.11 0.34 16 20 C -0.18 -0.55 7.84 37.16 0.29 -0.25 16 21 C -0.11 -0.30 5.74 -26.42 -0.15 -0.46 16 22 C -0.58 -1.62 7.40 37.79 0.28 -1.34 16 23 S 2.39 15.94 6.07 -107.50 -0.65 15.29 16 24 O -0.91 -10.31 18.16 -57.66 -1.05 -11.36 16 25 O -0.94 -9.50 18.16 -57.66 -1.05 -10.55 16 26 C -0.58 -2.65 6.11 37.79 0.23 -2.42 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 28 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 32 H 0.04 0.55 6.86 -51.93 -0.36 0.19 16 33 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 34 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.40 4.86 4.83 -40.82 -0.20 4.66 16 39 H 0.41 3.31 6.25 -185.16 -1.16 2.15 16 40 H 0.34 2.01 8.09 -181.36 -1.47 0.54 16 41 H 0.07 0.26 6.72 -51.93 -0.35 -0.09 16 42 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.10 0.30 7.70 -51.92 -0.40 -0.10 16 45 H 0.10 0.09 7.52 -51.93 -0.39 -0.30 16 46 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.14 0.10 8.14 -51.93 -0.42 -0.32 16 48 H 0.14 0.25 7.85 -51.93 -0.41 -0.15 16 49 H 0.15 0.84 6.75 -51.93 -0.35 0.49 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -38.51 388.38 -10.80 -49.31 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -9.75 Total: 0.63 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.18 Total: -9.67 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.59 Total: -45.60 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -2.00 Total: -32.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 15.94 SS G_CDS: -0.65 Total: 15.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.51 -10.80 -49.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.311 kcal (2) G-P(sol) polarization free energy of solvation -38.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds