Wall clock time and date at job start Wed Apr 1 2020 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46867 * 2 1 4 4 C 1.52996 * 109.47115 * 240.00255 * 2 1 3 5 5 C 1.50706 * 109.47217 * 60.00208 * 4 2 1 6 6 H 1.07999 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00249 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00228 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99742 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47108 * 90.00597 * 9 7 5 11 11 H 1.48497 * 109.47070 * 210.00134 * 9 7 5 12 12 H 1.48497 * 109.47113 * 330.00253 * 9 7 5 13 13 C 1.52998 * 109.47296 * 119.99891 * 2 1 3 14 14 N 1.46496 * 109.47517 * 300.00355 * 13 2 1 15 15 C 1.34776 * 120.00221 * 179.97438 * 14 13 2 16 16 O 1.21586 * 119.99937 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00045 * 180.02562 * 15 14 13 18 18 N 1.36607 * 119.99771 * 359.97438 * 17 15 14 19 19 C 1.46901 * 110.99672 * 180.02562 * 18 17 15 20 20 C 1.53004 * 108.89042 * 300.70137 * 19 18 17 21 21 C 1.52378 * 108.92525 * 182.03519 * 19 18 17 22 22 C 1.54211 * 112.29419 * 239.25394 * 21 19 18 23 23 S 1.83825 * 102.86011 * 25.04461 * 22 21 19 24 24 O 1.42098 * 109.81024 * 77.68519 * 23 22 21 25 25 O 1.42104 * 109.81011 * 212.03118 * 23 22 21 26 26 C 1.54207 * 108.92698 * 59.36842 * 19 18 17 27 27 H 1.08993 * 109.46830 * 299.99624 * 1 2 3 28 28 H 1.08995 * 109.47248 * 59.99966 * 1 2 3 29 29 H 1.08995 * 109.46633 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47352 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47677 * 300.00612 * 3 2 1 32 32 H 1.09004 * 109.47440 * 60.00182 * 3 2 1 33 33 H 1.08997 * 109.47066 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47365 * 299.99991 * 4 2 1 35 35 H 0.96995 * 120.00062 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47374 * 179.97438 * 13 2 1 37 37 H 1.09008 * 109.46865 * 60.00382 * 13 2 1 38 38 H 0.97001 * 119.99609 * 0.02562 * 14 13 2 39 39 H 0.96995 * 120.00267 * 180.02562 * 17 15 14 40 40 H 1.00901 * 110.99866 * 56.05216 * 18 17 15 41 41 H 1.09001 * 109.47434 * 59.30394 * 20 19 18 42 42 H 1.09005 * 109.47145 * 179.30307 * 20 19 18 43 43 H 1.09002 * 109.47147 * 299.30127 * 20 19 18 44 44 H 1.09007 * 108.92542 * 359.97438 * 21 19 18 45 45 H 1.08993 * 108.92796 * 118.51149 * 21 19 18 46 46 H 1.09002 * 110.73301 * 143.38527 * 22 21 19 47 47 H 1.08997 * 110.73494 * 266.52125 * 22 21 19 48 48 H 1.08995 * 110.73710 * 214.03858 * 26 19 18 49 49 H 1.08999 * 110.73896 * 337.36089 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0107 -2.4797 6 1 0.9165 0.8672 -2.3806 7 6 1.8704 -0.4819 -3.7320 8 7 1.4316 0.1378 -4.8058 9 14 2.9443 -2.0008 -3.9034 10 1 2.0857 -3.2116 -3.9485 11 1 3.7358 -1.9085 -5.1565 12 1 3.8650 -2.0897 -2.7418 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4915 3.6695 16 8 2.5753 -1.4806 3.7810 17 7 1.4273 0.1435 4.7700 18 7 0.6423 1.2544 4.6446 19 6 0.2669 1.7851 5.9620 20 6 -0.4938 0.7043 6.7330 21 6 -0.6466 2.9891 5.7679 22 6 -0.0661 4.2714 6.3978 23 16 1.7420 3.9401 6.4078 24 8 2.2744 4.1338 5.1047 25 8 2.3419 4.5759 7.5282 26 6 1.5487 2.1457 6.7398 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6768 -1.7488 -1.2493 35 1 1.6660 -0.1935 -5.6868 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7490 1.2492 38 1 0.9938 0.7577 2.3564 39 1 1.6616 -0.1879 5.6509 40 1 -0.1755 1.0583 4.0871 41 1 0.1396 -0.1756 6.8456 42 1 -0.7664 1.0842 7.7177 43 1 -1.3965 0.4344 6.1850 44 1 -0.7915 3.1544 4.7002 45 1 -1.6131 2.7770 6.2249 46 1 -0.2956 5.1415 5.7826 47 1 -0.4419 4.4075 7.4118 48 1 1.4172 1.9634 7.8063 49 1 2.4033 1.5895 6.3546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807591486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:34 Heat of formation + Delta-G solvation = -99.141394 kcal Electronic energy + Delta-G solvation = -29925.865650 eV Core-core repulsion = 25822.330633 eV Total energy + Delta-G solvation = -4103.535017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.56133 -39.86988 -38.64360 -37.98757 -36.96795 -35.97870 -35.06481 -33.81379 -31.70574 -29.85829 -29.58550 -28.71814 -27.93813 -27.44314 -25.12894 -24.37270 -21.86900 -21.29246 -20.28105 -19.77921 -19.02447 -18.84554 -18.62747 -17.38934 -17.28268 -16.86742 -16.65316 -16.48669 -16.06199 -15.88751 -15.39018 -15.21477 -15.09543 -14.92257 -14.68929 -14.20465 -14.13176 -14.06924 -13.90043 -13.62941 -13.53802 -13.15846 -13.00891 -12.91604 -12.86420 -12.81053 -12.65093 -12.57648 -12.26499 -12.12828 -12.06715 -11.84726 -11.75954 -11.54799 -11.48638 -11.45507 -11.13785 -11.04006 -10.87414 -10.67899 -10.04783 -9.04144 -8.20017 -6.19635 -0.83056 1.37099 1.40414 1.50623 1.59375 1.64308 2.10224 2.41248 2.50740 2.66993 3.07062 3.15611 3.32939 3.55340 3.65864 3.84077 3.96929 4.08060 4.08738 4.11067 4.21337 4.33215 4.59449 4.68373 4.73521 4.76238 4.77223 4.79794 4.83849 4.95984 5.00935 5.05944 5.13429 5.14160 5.23166 5.34280 5.34548 5.41539 5.45112 5.54077 5.60779 5.73780 5.79547 6.12126 6.22644 6.41368 6.87253 7.22455 7.43010 7.61562 8.95615 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.002462 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.051096 B =11371.281218 C =11875.752547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 C -0.123 4.123 4 C -0.004 4.004 5 C -0.499 4.499 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.933 3.067 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.253 1.253 13 C 0.155 3.845 14 N -0.717 5.717 15 C 0.710 3.290 16 O -0.638 6.638 17 N -0.579 5.579 18 N -0.454 5.454 19 C 0.106 3.894 20 C -0.177 4.177 21 C -0.115 4.115 22 C -0.545 4.545 23 S 2.367 3.633 24 O -0.967 6.967 25 O -0.988 6.988 26 C -0.574 4.574 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.012 0.988 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.412 0.588 39 H 0.419 0.581 40 H 0.354 0.646 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.168 0.832 48 H 0.176 0.824 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 6.044 31.070 33.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.042 4.042 5 C -0.538 4.538 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.594 5.594 9 Si 0.758 3.242 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.177 1.177 13 C 0.030 3.970 14 N -0.374 5.374 15 C 0.410 3.590 16 O -0.518 6.518 17 N -0.332 5.332 18 N -0.185 5.185 19 C 0.014 3.986 20 C -0.236 4.236 21 C -0.154 4.154 22 C -0.678 4.678 23 S 2.556 3.444 24 O -0.964 6.964 25 O -0.985 6.985 26 C -0.704 4.704 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.250 0.750 39 H 0.264 0.736 40 H 0.176 0.824 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.151 0.849 46 H 0.171 0.829 47 H 0.186 0.814 48 H 0.193 0.807 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.064 6.378 30.563 32.246 hybrid contribution -0.597 -1.518 -0.304 1.659 sum -8.661 4.860 30.259 31.847 Atomic orbital electron populations 1.21682 0.93515 1.01344 1.01312 1.20544 0.96806 0.95793 0.92566 1.21695 0.99997 0.95222 1.01154 1.19569 0.95858 0.95591 0.93145 1.21373 1.30120 1.12235 0.90031 0.92851 1.25815 0.97435 0.99879 0.95915 1.70039 1.48217 1.42697 0.98408 0.85912 0.79917 0.80536 0.77801 1.19536 1.21625 1.17714 1.21158 0.97919 0.95322 0.82623 1.44991 1.55824 1.33124 1.03447 1.15792 0.80170 0.81936 0.81134 1.90948 1.45376 1.29614 1.85831 1.44468 1.52752 1.28392 1.07570 1.62459 1.22695 1.17150 1.16150 1.21514 0.92245 0.97819 0.87070 1.22664 1.00479 0.97713 1.02768 1.21796 1.00442 0.88090 1.05106 1.30201 1.18996 1.06072 1.12534 1.09497 0.81263 0.79790 0.73803 1.93631 1.78306 1.84850 1.39608 1.93556 1.76966 1.74225 1.53756 1.30572 1.05150 1.23773 1.10942 0.91145 0.93597 0.93414 0.94235 0.93519 0.91512 0.96975 0.96600 0.92910 0.93388 0.92413 0.74962 0.73645 0.82356 0.92493 0.88180 0.90398 0.87691 0.84853 0.82895 0.81387 0.80661 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.06 -2.03 0.54 -52.18 -0.03 -2.05 16 3 C -0.12 -4.35 8.05 71.98 0.58 -3.78 16 4 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 5 C -0.50 -27.22 8.20 25.60 0.21 -27.01 16 6 H 0.05 3.12 5.92 -2.91 -0.02 3.11 16 7 C 0.01 0.33 5.47 84.65 0.46 0.79 16 8 N -0.95 -58.95 13.96 21.45 0.30 -58.66 16 9 Si 0.93 44.80 27.47 68.60 1.88 46.68 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 13 C 0.15 5.06 4.56 86.38 0.39 5.45 16 14 N -0.72 -18.76 4.89 -478.54 -2.34 -21.09 16 15 C 0.71 19.25 8.63 179.05 1.54 20.79 16 16 O -0.64 -23.16 17.18 -3.99 -0.07 -23.23 16 17 N -0.58 -9.81 4.80 -184.74 -0.89 -10.70 16 18 N -0.45 -5.06 5.61 -150.76 -0.85 -5.91 16 19 C 0.11 0.50 0.81 3.73 0.00 0.50 16 20 C -0.18 -0.27 7.84 71.98 0.56 0.29 16 21 C -0.11 -0.08 5.74 30.80 0.18 0.09 16 22 C -0.54 -0.94 7.40 72.39 0.54 -0.40 16 23 S 2.37 29.59 6.07 -56.49 -0.34 29.25 16 24 O -0.97 -22.60 18.16 -127.53 -2.32 -24.91 16 25 O -0.99 -20.08 18.16 -127.53 -2.32 -22.40 16 26 C -0.57 -3.86 6.11 72.39 0.44 -3.42 16 27 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 28 H 0.04 1.73 6.62 -2.39 -0.02 1.71 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.05 1.87 6.62 -2.39 -0.02 1.86 16 32 H 0.07 1.91 6.86 -2.39 -0.02 1.90 16 33 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 34 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.41 8.86 4.83 -92.71 -0.45 8.41 16 39 H 0.42 5.92 6.25 -215.50 -1.35 4.57 16 40 H 0.35 2.86 8.09 -210.55 -1.70 1.15 16 41 H 0.06 0.24 6.72 -2.39 -0.02 0.22 16 42 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 43 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.10 0.15 7.70 -2.38 -0.02 0.13 16 45 H 0.13 -0.64 7.52 -2.39 -0.02 -0.66 16 46 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.17 -0.66 8.14 -2.39 -0.02 -0.68 16 48 H 0.18 0.01 7.85 -2.39 -0.02 -0.01 16 49 H 0.13 1.37 6.75 -2.39 -0.02 1.35 16 Total: -1.00 -88.18 388.38 -3.94 -92.12 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.56 Total: 10.98 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 5.56 Total: -12.13 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -3.77 Total: -96.36 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -4.70 Total: -70.54 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Atomic # 16 Polarization: 29.59 SS G_CDS: -0.34 Total: 29.25 kcal Total: -88.18 -3.94 -92.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807591486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.020 kcal (2) G-P(sol) polarization free energy of solvation -88.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds