Wall clock time and date at job start Wed Apr 1 2020 04:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34648 * 116.99530 * 2 1 4 4 O 1.21498 * 120.00004 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99463 * 180.02562 * 3 2 1 6 6 C 1.39451 * 119.99794 * 175.36460 * 5 3 2 7 7 C 1.39125 * 119.92597 * 215.39750 * 6 5 3 8 8 C 1.37665 * 120.07378 * 180.02562 * 7 6 5 9 9 C 1.39753 * 119.92647 * 359.97438 * 8 7 6 10 10 C 1.47588 * 120.07642 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99909 * 328.22656 * 10 9 8 12 12 N 1.34781 * 119.99764 * 148.22155 * 10 9 8 13 13 C 1.47079 * 120.88199 * 354.19041 * 12 10 9 14 14 C 1.53238 * 108.52074 * 231.20926 * 13 12 10 15 15 N 1.46906 * 109.33851 * 306.16862 * 14 13 12 16 16 C 1.46894 * 111.00035 * 187.25682 * 15 14 13 17 17 C 1.50700 * 109.47200 * 170.00072 * 16 15 14 18 18 H 1.08001 * 119.99831 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00164 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99951 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47424 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47177 * 120.00241 * 21 19 17 24 24 H 1.48508 * 109.47199 * 240.00083 * 21 19 17 25 25 C 1.46897 * 111.26922 * 63.10372 * 15 14 13 26 26 C 1.47080 * 120.87939 * 174.20995 * 12 10 9 27 27 C 1.39757 * 119.84811 * 0.27597 * 9 8 7 28 28 C 1.37658 * 119.92500 * 359.46529 * 27 9 8 29 29 H 1.08998 * 109.46641 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46868 * 300.00116 * 1 2 3 31 31 H 1.08998 * 109.47249 * 60.00306 * 1 2 3 32 32 H 0.97001 * 120.00184 * 355.36746 * 5 3 2 33 33 H 1.08003 * 119.96669 * 0.02654 * 7 6 5 34 34 H 1.07999 * 120.03973 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.63139 * 111.49500 * 13 12 10 36 36 H 1.09006 * 109.63099 * 350.91472 * 13 12 10 37 37 H 1.09003 * 109.49742 * 186.21350 * 14 13 12 38 38 H 1.08998 * 109.49893 * 66.12517 * 14 13 12 39 39 H 1.09002 * 109.47070 * 289.99671 * 16 15 14 40 40 H 1.09003 * 109.47399 * 49.99963 * 16 15 14 41 41 H 0.96996 * 119.99948 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.49072 * 56.85779 * 25 15 14 43 43 H 1.08998 * 109.49453 * 176.91093 * 25 15 14 44 44 H 1.08999 * 109.62793 * 9.08525 * 26 12 10 45 45 H 1.08993 * 109.62668 * 248.50512 * 26 12 10 46 46 H 1.08002 * 120.03393 * 179.72355 * 27 9 8 47 47 H 1.08004 * 119.96420 * 180.27445 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0423 2.5089 -0.0981 7 6 5.2359 2.6245 -0.8036 8 6 5.8639 3.8457 -0.9014 9 6 5.3009 4.9701 -0.2916 10 6 5.9716 6.2808 -0.3939 11 8 7.1842 6.3396 -0.4599 12 7 5.2398 7.4124 -0.4143 13 6 3.7708 7.3607 -0.4635 14 6 3.2903 8.2574 -1.6095 15 7 3.8594 9.6019 -1.4466 16 6 3.2888 10.5372 -2.4251 17 6 3.7032 11.9436 -2.0766 18 1 4.3276 12.1245 -1.2142 19 6 3.2851 12.9993 -2.8587 20 7 2.5243 12.7790 -3.9086 21 14 3.7982 14.7426 -2.4262 22 1 4.6468 14.7210 -1.2079 23 1 4.5674 15.3265 -3.5544 24 1 2.5887 15.5662 -2.1731 25 6 5.3253 9.5746 -1.5372 26 6 5.8892 8.7319 -0.3882 27 6 4.1045 4.8493 0.4207 28 6 3.4790 3.6263 0.5101 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9373 0.4595 0.0669 33 1 5.6703 1.7554 -1.2750 34 1 6.7901 3.9349 -1.4495 35 1 3.3598 7.7203 0.4798 36 1 3.4461 6.3352 -0.6403 37 1 2.2021 8.3185 -1.5920 38 1 3.6161 7.8375 -2.5612 39 1 3.6531 10.2875 -3.4216 40 1 2.2014 10.4637 -2.4067 41 1 2.2299 13.5218 -4.4586 42 1 5.6228 9.1363 -2.4898 43 1 5.7131 10.5909 -1.4676 44 1 6.9652 8.6129 -0.5152 45 1 5.6819 9.2232 0.5623 46 1 3.6691 5.7153 0.8970 47 1 2.5522 3.5331 1.0567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827485444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:30 Heat of formation + Delta-G solvation = -52.284939 kcal Electronic energy + Delta-G solvation = -30055.345755 eV Core-core repulsion = 25818.398636 eV Total energy + Delta-G solvation = -4236.947120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41098 -40.44340 -38.98129 -37.51700 -36.89844 -35.38507 -34.45423 -32.43932 -31.59037 -30.93346 -30.06904 -28.35750 -27.79161 -25.67139 -24.26791 -23.51456 -22.89146 -22.11938 -21.55572 -20.62115 -19.44090 -19.09410 -18.10518 -17.30048 -17.10477 -16.76081 -16.35342 -16.04421 -15.41201 -14.94076 -14.70967 -14.65228 -14.56287 -14.39733 -14.23252 -14.01412 -13.79705 -13.52811 -13.50101 -13.09354 -12.74782 -12.72408 -12.58344 -12.18821 -12.02679 -11.46218 -11.31357 -11.26392 -11.20230 -11.01933 -10.85886 -10.73086 -10.66275 -10.57818 -10.50325 -9.89132 -9.74603 -9.29188 -9.15412 -8.63554 -8.47415 -8.38282 -7.31793 -6.05321 -4.07036 0.56829 1.10362 1.57575 2.21244 2.79634 3.09275 3.30138 3.37728 3.42308 3.57174 3.66665 4.40001 4.47555 4.51526 4.64178 4.67619 4.76275 4.81707 4.97042 4.98892 5.10541 5.15554 5.27693 5.30015 5.41118 5.50983 5.61142 5.62956 5.73029 5.80305 5.84364 5.91073 5.96803 6.02139 6.07892 6.14156 6.23576 6.41790 6.53929 6.58550 6.74824 6.75511 7.23198 7.29293 7.53211 7.71488 7.75848 8.02129 8.12797 8.23545 8.48632 9.00554 9.57532 11.05564 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.002170 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.244213 B =12898.732145 C =14263.260354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.369 6.369 3 C 0.647 3.353 4 O -0.546 6.546 5 N -0.649 5.649 6 C 0.173 3.827 7 C -0.148 4.148 8 C -0.043 4.043 9 C -0.138 4.138 10 C 0.558 3.442 11 O -0.546 6.546 12 N -0.600 5.600 13 C 0.097 3.903 14 C 0.039 3.961 15 N -0.535 5.535 16 C 0.193 3.807 17 C -0.508 4.508 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.051 3.949 26 C 0.115 3.885 27 C -0.072 4.072 28 C -0.127 4.127 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.419 0.581 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.027 0.973 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.025 0.975 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.144 0.856 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -27.903 8.994 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.283 6.283 3 C 0.400 3.600 4 O -0.433 6.433 5 N -0.300 5.300 6 C 0.079 3.921 7 C -0.168 4.168 8 C -0.063 4.063 9 C -0.142 4.142 10 C 0.347 3.653 11 O -0.425 6.425 12 N -0.332 5.332 13 C -0.026 4.026 14 C -0.090 4.090 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.547 4.547 18 H 0.083 0.917 19 C -0.147 4.147 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.078 4.078 26 C -0.007 4.007 27 C -0.091 4.091 28 C -0.147 4.147 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.256 0.744 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.162 0.838 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.187 -27.173 9.265 28.710 hybrid contribution 0.279 0.334 -0.793 0.905 sum 0.093 -26.839 8.471 28.145 Atomic orbital electron populations 1.23304 0.73482 1.03891 1.03235 1.86241 1.24874 1.30414 1.86726 1.18102 0.83017 0.82616 0.76221 1.91050 1.64271 1.34493 1.53511 1.41827 1.03674 1.09270 1.75274 1.17629 0.93291 0.84220 0.96943 1.20790 0.96362 0.98676 1.00970 1.20984 0.98719 0.90248 0.96326 1.20002 0.96801 0.94206 1.03148 1.18227 0.86704 0.83761 0.76654 1.90759 1.13563 1.87127 1.51038 1.48119 1.07387 1.06084 1.71654 1.22490 0.79068 1.00762 1.00241 1.22418 1.00191 0.90768 0.95655 1.62102 1.04255 1.05812 1.53901 1.19731 0.95190 0.90300 0.87940 1.21181 1.31401 0.90621 1.11471 0.91715 1.25001 0.95236 0.99417 0.95006 1.69967 1.35610 1.31670 1.16485 0.86435 0.78335 0.84280 0.78330 1.19609 1.21134 1.21016 1.22341 0.89659 1.00604 0.95218 1.21899 0.97843 0.80959 0.99998 1.21585 0.92896 0.97850 0.96802 1.21238 1.01676 0.91397 1.00385 0.87606 0.91450 0.91402 0.74425 0.84796 0.84321 0.90321 0.88793 0.89936 0.95456 0.99106 0.95020 0.92945 0.95696 0.88422 0.89245 0.90720 0.83802 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 10.56 101.05 1.07 1.34 16 2 O -0.37 -2.72 10.62 -40.35 -0.43 -3.15 16 3 C 0.65 6.00 8.58 54.05 0.46 6.46 16 4 O -0.55 -6.70 13.56 -19.27 -0.26 -6.96 16 5 N -0.65 -4.76 5.32 -14.27 -0.08 -4.84 16 6 C 0.17 1.60 6.29 -83.73 -0.53 1.07 16 7 C -0.15 -1.26 9.94 -39.46 -0.39 -1.65 16 8 C -0.04 -0.47 9.59 -39.22 -0.38 -0.85 16 9 C -0.14 -1.74 5.39 -104.95 -0.57 -2.31 16 10 C 0.56 8.72 7.42 -12.44 -0.09 8.63 16 11 O -0.55 -10.05 16.20 5.29 0.09 -9.97 16 12 N -0.60 -9.34 3.01 -173.67 -0.52 -9.86 16 13 C 0.10 1.37 4.85 -3.60 -0.02 1.35 16 14 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 15 N -0.54 -11.24 4.62 -235.76 -1.09 -12.33 16 16 C 0.19 4.96 4.72 -4.98 -0.02 4.93 16 17 C -0.51 -14.01 8.41 -34.44 -0.29 -14.30 16 18 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.05 0.99 5.46 -3.70 -0.02 0.97 16 26 C 0.12 1.90 6.61 -3.60 -0.02 1.88 16 27 C -0.07 -0.80 7.38 -39.23 -0.29 -1.09 16 28 C -0.13 -1.34 8.66 -39.46 -0.34 -1.68 16 29 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.42 1.72 8.93 -40.82 -0.36 1.36 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.14 1.45 7.95 -52.49 -0.42 1.04 16 35 H 0.08 1.03 7.95 -51.93 -0.41 0.62 16 36 H 0.09 1.16 4.48 -51.93 -0.23 0.92 16 37 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 44 H 0.09 1.47 7.04 -51.93 -0.37 1.11 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.14 1.46 5.65 -52.49 -0.30 1.16 16 47 H 0.15 1.59 6.23 -52.48 -0.33 1.27 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -34.55 383.72 -8.82 -43.37 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.48 Total: 0.43 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.55 Total: 6.87 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.95 Total: -52.82 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.60 Total: -20.08 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.55 -8.82 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.912 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds