Wall clock time and date at job start Wed Apr 1 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34648 * 116.99530 * 2 1 4 4 O 1.21498 * 120.00004 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99463 * 180.02562 * 3 2 1 6 6 C 1.39451 * 119.99794 * 175.36460 * 5 3 2 7 7 C 1.39125 * 119.92597 * 215.39750 * 6 5 3 8 8 C 1.37665 * 120.07378 * 180.02562 * 7 6 5 9 9 C 1.39753 * 119.92647 * 359.97438 * 8 7 6 10 10 C 1.47588 * 120.07642 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99909 * 328.22656 * 10 9 8 12 12 N 1.34781 * 119.99764 * 148.22155 * 10 9 8 13 13 C 1.47079 * 120.88199 * 354.19041 * 12 10 9 14 14 C 1.53238 * 108.52074 * 231.20926 * 13 12 10 15 15 N 1.46906 * 109.33851 * 306.16862 * 14 13 12 16 16 C 1.46894 * 111.00035 * 187.25682 * 15 14 13 17 17 C 1.50700 * 109.47200 * 170.00072 * 16 15 14 18 18 H 1.08001 * 119.99831 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00164 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99951 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47424 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47177 * 120.00241 * 21 19 17 24 24 H 1.48508 * 109.47199 * 240.00083 * 21 19 17 25 25 C 1.46897 * 111.26922 * 63.10372 * 15 14 13 26 26 C 1.47080 * 120.87939 * 174.20995 * 12 10 9 27 27 C 1.39757 * 119.84811 * 0.27597 * 9 8 7 28 28 C 1.37658 * 119.92500 * 359.46529 * 27 9 8 29 29 H 1.08998 * 109.46641 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46868 * 300.00116 * 1 2 3 31 31 H 1.08998 * 109.47249 * 60.00306 * 1 2 3 32 32 H 0.97001 * 120.00184 * 355.36746 * 5 3 2 33 33 H 1.08003 * 119.96669 * 0.02654 * 7 6 5 34 34 H 1.07999 * 120.03973 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.63139 * 111.49500 * 13 12 10 36 36 H 1.09006 * 109.63099 * 350.91472 * 13 12 10 37 37 H 1.09003 * 109.49742 * 186.21350 * 14 13 12 38 38 H 1.08998 * 109.49893 * 66.12517 * 14 13 12 39 39 H 1.09002 * 109.47070 * 289.99671 * 16 15 14 40 40 H 1.09003 * 109.47399 * 49.99963 * 16 15 14 41 41 H 0.96996 * 119.99948 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.49072 * 56.85779 * 25 15 14 43 43 H 1.08998 * 109.49453 * 176.91093 * 25 15 14 44 44 H 1.08999 * 109.62793 * 9.08525 * 26 12 10 45 45 H 1.08993 * 109.62668 * 248.50512 * 26 12 10 46 46 H 1.08002 * 120.03393 * 179.72355 * 27 9 8 47 47 H 1.08004 * 119.96420 * 180.27445 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0423 2.5089 -0.0981 7 6 5.2359 2.6245 -0.8036 8 6 5.8639 3.8457 -0.9014 9 6 5.3009 4.9701 -0.2916 10 6 5.9716 6.2808 -0.3939 11 8 7.1842 6.3396 -0.4599 12 7 5.2398 7.4124 -0.4143 13 6 3.7708 7.3607 -0.4635 14 6 3.2903 8.2574 -1.6095 15 7 3.8594 9.6019 -1.4466 16 6 3.2888 10.5372 -2.4251 17 6 3.7032 11.9436 -2.0766 18 1 4.3276 12.1245 -1.2142 19 6 3.2851 12.9993 -2.8587 20 7 2.5243 12.7790 -3.9086 21 14 3.7982 14.7426 -2.4262 22 1 4.6468 14.7210 -1.2079 23 1 4.5674 15.3265 -3.5544 24 1 2.5887 15.5662 -2.1731 25 6 5.3253 9.5746 -1.5372 26 6 5.8892 8.7319 -0.3882 27 6 4.1045 4.8493 0.4207 28 6 3.4790 3.6263 0.5101 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9373 0.4595 0.0669 33 1 5.6703 1.7554 -1.2750 34 1 6.7901 3.9349 -1.4495 35 1 3.3598 7.7203 0.4798 36 1 3.4461 6.3352 -0.6403 37 1 2.2021 8.3185 -1.5920 38 1 3.6161 7.8375 -2.5612 39 1 3.6531 10.2875 -3.4216 40 1 2.2014 10.4637 -2.4067 41 1 2.2299 13.5218 -4.4586 42 1 5.6228 9.1363 -2.4898 43 1 5.7131 10.5909 -1.4676 44 1 6.9652 8.6129 -0.5152 45 1 5.6819 9.2232 0.5623 46 1 3.6691 5.7153 0.8970 47 1 2.5522 3.5331 1.0567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827485444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:29 Heat of formation + Delta-G solvation = -77.255959 kcal Electronic energy + Delta-G solvation = -30056.428580 eV Core-core repulsion = 25818.398636 eV Total energy + Delta-G solvation = -4238.029944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.15330 -41.51953 -39.90290 -38.92412 -37.64220 -36.28056 -35.92577 -34.42415 -32.69443 -31.90544 -31.14173 -29.91388 -28.44044 -27.35099 -25.35031 -24.67641 -24.04318 -23.54908 -22.58756 -21.86565 -20.40788 -20.05671 -18.83649 -18.59306 -18.35740 -17.76216 -17.53669 -17.12721 -16.68734 -16.52896 -16.03492 -15.85326 -15.64624 -15.52626 -15.25783 -15.13505 -14.97100 -14.72469 -14.39186 -14.33762 -14.02880 -13.85906 -13.66870 -13.37239 -13.07047 -13.00584 -12.77279 -12.61593 -12.49146 -12.36136 -12.31715 -12.09838 -11.87084 -11.82031 -11.72059 -11.47792 -11.31943 -10.93191 -10.63165 -10.00636 -9.85131 -9.33095 -9.08583 -8.21452 -6.31408 -0.29231 0.32083 0.97207 1.41755 1.42351 1.43444 1.55941 1.74052 1.92207 2.40133 2.71104 3.08739 3.10876 3.21468 3.39666 3.75043 3.86397 3.96950 4.02571 4.18678 4.20272 4.25551 4.31442 4.34733 4.37636 4.38858 4.40967 4.55580 4.68419 4.72259 4.80294 4.90337 4.90975 4.97417 5.01856 5.11217 5.15305 5.17460 5.20062 5.29490 5.33619 5.44310 5.63483 5.81082 6.01510 6.15387 6.17842 6.35415 6.55185 6.84327 7.01216 7.08266 7.38389 8.90037 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.002170 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.244213 B =12898.732145 C =14263.260354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.365 6.365 3 C 0.645 3.355 4 O -0.580 6.580 5 N -0.635 5.635 6 C 0.178 3.822 7 C -0.132 4.132 8 C -0.049 4.049 9 C -0.159 4.159 10 C 0.558 3.442 11 O -0.579 6.579 12 N -0.605 5.605 13 C 0.109 3.891 14 C 0.036 3.964 15 N -0.536 5.536 16 C 0.208 3.792 17 C -0.522 4.522 18 H 0.067 0.933 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.278 1.278 25 C 0.056 3.944 26 C 0.126 3.874 27 C -0.071 4.071 28 C -0.134 4.134 29 H 0.139 0.861 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.436 0.564 33 H 0.170 0.830 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.015 0.985 39 H -0.043 1.043 40 H 0.010 0.990 41 H 0.264 0.736 42 H 0.008 0.992 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.151 0.849 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -29.831 10.318 31.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.278 6.278 3 C 0.399 3.601 4 O -0.469 6.469 5 N -0.288 5.288 6 C 0.083 3.917 7 C -0.152 4.152 8 C -0.068 4.068 9 C -0.163 4.163 10 C 0.349 3.651 11 O -0.461 6.461 12 N -0.336 5.336 13 C -0.013 4.013 14 C -0.093 4.093 15 N -0.261 5.261 16 C 0.082 3.918 17 C -0.560 4.560 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.185 1.185 23 H -0.207 1.207 24 H -0.204 1.204 25 C -0.073 4.073 26 C 0.003 3.997 27 C -0.090 4.090 28 C -0.154 4.154 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.276 0.724 33 H 0.187 0.813 34 H 0.157 0.843 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.034 0.966 39 H -0.025 1.025 40 H 0.028 0.972 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.169 0.831 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.090 -29.166 10.609 31.036 hybrid contribution 0.191 0.768 -1.231 1.464 sum 0.101 -28.398 9.378 29.906 Atomic orbital electron populations 1.23587 0.72172 1.05954 1.02869 1.86265 1.26120 1.29175 1.86280 1.18293 0.83376 0.82699 0.75716 1.91034 1.65123 1.35720 1.55062 1.41714 1.03289 1.09415 1.74382 1.17743 0.93308 0.84570 0.96074 1.21030 0.95498 0.98889 0.99802 1.21116 0.98883 0.90602 0.96202 1.19855 0.97841 0.93098 1.05467 1.18687 0.86363 0.84576 0.75478 1.90732 1.15054 1.87658 1.52622 1.48181 1.07940 1.05798 1.71702 1.22537 0.78212 1.01167 0.99414 1.22557 1.00599 0.89354 0.96795 1.62035 1.05083 1.07123 1.51874 1.19386 0.93850 0.91192 0.87380 1.21490 1.31325 0.91639 1.11525 0.91476 1.25932 0.95113 1.03975 0.94778 1.70093 1.36757 1.33123 1.17591 0.85313 0.78134 0.78663 0.78377 1.18492 1.20705 1.20410 1.22281 0.88735 1.00404 0.95887 1.21702 0.97727 0.81268 0.98971 1.21567 0.92341 0.98453 0.96595 1.21270 1.01614 0.91747 1.00783 0.84341 0.91642 0.92012 0.72358 0.81276 0.84272 0.88530 0.86498 0.89294 0.96629 1.02496 0.97172 0.92710 0.97353 0.89868 0.89172 0.89467 0.83148 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.39 10.56 113.37 1.20 1.58 16 2 O -0.37 -4.60 10.62 -55.57 -0.59 -5.19 16 3 C 0.64 10.72 8.58 129.79 1.11 11.83 16 4 O -0.58 -13.54 13.56 19.85 0.27 -13.27 16 5 N -0.64 -7.59 5.32 -429.46 -2.28 -9.87 16 6 C 0.18 2.82 6.29 38.36 0.24 3.07 16 7 C -0.13 -1.85 9.94 22.35 0.22 -1.63 16 8 C -0.05 -0.97 9.59 22.50 0.22 -0.75 16 9 C -0.16 -3.82 5.39 -20.08 -0.11 -3.93 16 10 C 0.56 17.16 7.42 86.71 0.64 17.80 16 11 O -0.58 -21.33 16.20 -3.98 -0.06 -21.39 16 12 N -0.60 -18.46 3.01 -821.63 -2.47 -20.93 16 13 C 0.11 2.94 4.85 86.35 0.42 3.36 16 14 C 0.04 1.27 5.62 86.38 0.49 1.75 16 15 N -0.54 -23.02 4.62 -899.81 -4.16 -27.18 16 16 C 0.21 11.11 4.72 85.56 0.40 11.51 16 17 C -0.52 -29.35 8.41 25.60 0.22 -29.14 16 18 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 19 C 0.00 0.00 5.46 84.66 0.46 0.46 16 20 N -0.94 -56.47 13.29 21.45 0.28 -56.18 16 21 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C 0.06 2.24 5.46 86.38 0.47 2.71 16 26 C 0.13 4.14 6.61 86.35 0.57 4.72 16 27 C -0.07 -1.45 7.38 22.50 0.17 -1.28 16 28 C -0.13 -2.58 8.66 22.35 0.19 -2.39 16 29 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.44 2.12 8.93 -92.71 -0.83 1.29 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 34 H 0.14 2.74 7.95 -2.91 -0.02 2.71 16 35 H 0.10 2.33 7.95 -2.39 -0.02 2.31 16 36 H 0.12 2.70 4.48 -2.38 -0.01 2.69 16 37 H 0.09 3.00 7.99 -2.39 -0.02 2.98 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 40 H 0.01 0.58 7.97 -2.39 -0.02 0.56 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.08 3.53 6.67 -2.39 -0.02 3.52 16 44 H 0.09 2.98 7.04 -2.39 -0.02 2.97 16 45 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.15 2.79 5.65 -2.91 -0.02 2.77 16 47 H 0.14 2.92 6.23 -2.91 -0.02 2.90 16 Total: -1.00 -76.41 383.72 0.11 -76.30 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.18 Total: 11.72 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 6.91 Total: 19.67 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -8.63 Total: -114.16 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.39 Total: -39.85 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -76.41 0.11 -76.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827485444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.954 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds