Wall clock time and date at job start Wed Apr 1 2020 04:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00143 * 2 1 4 4 C 1.52995 * 109.47041 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47506 * 64.75423 * 4 3 2 6 6 C 1.46501 * 120.00000 * 84.45264 * 5 4 3 7 7 C 1.53176 * 109.54028 * 64.67290 * 6 5 4 8 8 C 1.53093 * 109.16008 * 183.14856 * 7 6 5 9 9 O 1.42899 * 109.41386 * 57.61258 * 8 7 6 10 10 C 1.42908 * 114.09811 * 298.83767 * 9 8 7 11 11 C 1.53087 * 109.41205 * 61.15854 * 10 9 8 12 12 S 1.65596 * 119.99590 * 264.46116 * 5 4 3 13 13 O 1.42096 * 104.28175 * 26.06633 * 12 5 4 14 14 O 1.42101 * 104.27747 * 153.92368 * 12 5 4 15 15 C 1.81405 * 104.44925 * 269.99429 * 12 5 4 16 16 C 1.53000 * 109.47008 * 173.63690 * 15 12 5 17 17 C 1.50696 * 115.55134 * 60.61174 * 16 15 12 18 18 H 1.08002 * 119.99913 * 265.09368 * 17 16 15 19 19 C 1.37878 * 120.00115 * 85.08927 * 17 16 15 20 20 N 1.31519 * 119.99662 * 177.13886 * 19 17 16 21 21 Si 1.86802 * 120.00091 * 357.14299 * 19 17 16 22 22 H 1.48494 * 109.47282 * 84.81689 * 21 19 17 23 23 H 1.48497 * 109.46924 * 204.81962 * 21 19 17 24 24 H 1.48499 * 109.46887 * 324.81738 * 21 19 17 25 25 C 1.52999 * 117.49632 * 274.93283 * 16 15 12 26 26 C 1.53006 * 117.49273 * 206.27575 * 16 15 12 27 27 H 1.08993 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46632 * 299.99580 * 1 2 3 29 29 H 1.09002 * 109.46893 * 59.99466 * 1 2 3 30 30 H 1.09003 * 109.47066 * 60.00452 * 3 2 1 31 31 H 1.08997 * 109.47384 * 300.00365 * 3 2 1 32 32 H 1.09000 * 109.47618 * 304.74789 * 4 3 2 33 33 H 1.09005 * 109.47040 * 184.74945 * 4 3 2 34 34 H 1.08999 * 109.61432 * 184.89236 * 6 5 4 35 35 H 1.09000 * 109.52408 * 63.24622 * 7 6 5 36 36 H 1.09002 * 109.52542 * 303.05774 * 7 6 5 37 37 H 1.09011 * 109.47923 * 177.59319 * 8 7 6 38 38 H 1.08996 * 109.48479 * 297.61487 * 8 7 6 39 39 H 1.08996 * 109.47961 * 181.13992 * 10 9 8 40 40 H 1.08998 * 109.47542 * 301.17811 * 10 9 8 41 41 H 1.09000 * 109.52480 * 62.29720 * 11 10 9 42 42 H 1.09004 * 109.52454 * 182.42254 * 11 10 9 43 43 H 1.09005 * 109.46986 * 293.63556 * 15 12 5 44 44 H 1.08996 * 109.46884 * 53.63136 * 15 12 5 45 45 H 0.97002 * 119.99464 * 179.97438 * 20 19 17 46 46 H 1.08996 * 117.49884 * 0.02562 * 25 16 15 47 47 H 1.09001 * 117.49164 * 145.02205 * 25 16 15 48 48 H 1.08999 * 117.49652 * 214.97855 * 26 16 15 49 49 H 1.08992 * 117.49864 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9753 0.5589 -1.2502 6 6 4.1686 1.3766 -2.4504 7 6 5.3134 2.3671 -2.2166 8 6 5.4563 3.2691 -3.4453 9 8 4.2192 3.9424 -3.6866 10 6 3.1222 3.0678 -3.9584 11 6 2.8856 2.1577 -2.7504 12 16 4.2538 -1.0725 -1.3060 13 8 3.4270 -1.6045 -0.2802 14 8 4.0442 -1.4174 -2.6685 15 6 6.0052 -1.2480 -0.8672 16 6 6.3500 -2.7322 -0.7287 17 6 6.1503 -3.5643 -1.9691 18 1 5.2274 -4.1066 -2.1128 19 6 7.1457 -3.6333 -2.9206 20 7 6.9945 -4.4037 -3.9758 21 14 8.7091 -2.6326 -2.7111 22 1 9.6653 -3.3814 -1.8565 23 1 9.3216 -2.3870 -4.0414 24 1 8.3832 -1.3340 -2.0688 25 6 6.0750 -3.3984 0.6209 26 6 7.5145 -3.1040 0.1915 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8518 0.5718 0.8435 33 1 3.9786 2.1768 0.0844 34 1 4.4101 0.7333 -3.2964 35 1 6.2422 1.8193 -2.0569 36 1 5.0941 2.9771 -1.3403 37 1 6.2415 4.0040 -3.2674 38 1 5.7157 2.6628 -4.3132 39 1 2.2259 3.6577 -4.1502 40 1 3.3509 2.4589 -4.8330 41 1 2.6172 2.7635 -1.8849 42 1 2.0772 1.4609 -2.9720 43 1 6.6218 -0.8030 -1.6482 44 1 6.1953 -0.7409 0.0788 45 1 7.6947 -4.4520 -4.6454 46 1 5.6480 -2.7794 1.4099 47 1 5.7498 -4.4387 0.6115 48 1 8.1358 -3.9507 -0.1000 49 1 8.0351 -2.2912 0.6979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867869560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:38 Heat of formation + Delta-G solvation = -150.987601 kcal Electronic energy + Delta-G solvation = -31776.511535 eV Core-core repulsion = 27638.435547 eV Total energy + Delta-G solvation = -4138.075988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.64715 -38.88800 -38.82612 -37.85035 -37.11365 -36.58750 -34.31566 -32.95524 -32.11291 -30.28158 -29.99424 -27.62103 -27.13115 -25.41183 -24.58796 -23.40153 -23.26009 -21.33860 -20.99842 -19.83694 -18.77975 -18.43033 -17.83556 -17.17135 -17.07850 -17.00422 -16.75086 -16.52365 -16.25553 -15.79786 -15.64908 -15.51033 -15.33602 -14.94609 -14.86230 -14.61478 -14.50123 -14.02835 -13.80433 -13.45063 -13.22497 -13.18112 -12.89086 -12.79497 -12.78303 -12.62434 -12.56887 -12.35403 -12.25298 -12.14218 -12.07207 -12.01514 -11.76929 -11.69487 -11.65994 -11.18919 -10.97985 -10.73350 -10.62239 -10.33843 -10.31464 -9.83839 -8.33884 -6.47769 -0.50844 1.31462 1.34496 1.45908 1.95592 2.33175 2.94948 2.97180 2.99220 3.08171 3.23383 3.41657 3.60237 3.77782 3.81553 4.00363 4.04377 4.12496 4.17145 4.19554 4.27692 4.32534 4.35055 4.39400 4.48331 4.49691 4.55068 4.60268 4.61275 4.63890 4.74864 4.79839 4.81179 4.84516 4.89474 4.89940 5.00622 5.06091 5.14413 5.14765 5.20544 5.38801 5.44214 5.60221 5.74523 6.17374 6.24364 6.45119 6.63338 7.25253 8.82849 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.005233 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.657277 B = 5349.218225 C = 6809.057069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.019 3.981 4 C 0.116 3.884 5 N -0.988 5.988 6 C 0.135 3.865 7 C -0.165 4.165 8 C 0.058 3.942 9 O -0.391 6.391 10 C 0.061 3.939 11 C -0.158 4.158 12 S 2.613 3.387 13 O -0.961 6.961 14 O -1.000 7.000 15 C -0.580 4.580 16 C -0.032 4.032 17 C -0.515 4.515 18 H 0.023 0.977 19 C 0.026 3.974 20 N -0.942 5.942 21 Si 0.933 3.067 22 H -0.256 1.256 23 H -0.294 1.294 24 H -0.218 1.218 25 C -0.170 4.170 26 C -0.169 4.169 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.047 0.953 39 H 0.117 0.883 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.154 0.846 45 H 0.268 0.732 46 H 0.113 0.887 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 22.106 9.005 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.059 4.059 4 C -0.008 4.008 5 N -0.824 5.824 6 C 0.029 3.971 7 C -0.204 4.204 8 C -0.020 4.020 9 O -0.310 6.310 10 C -0.017 4.017 11 C -0.197 4.197 12 S 2.711 3.289 13 O -0.951 6.951 14 O -0.990 6.990 15 C -0.711 4.711 16 C -0.035 4.035 17 C -0.553 4.553 18 H 0.041 0.959 19 C -0.173 4.173 20 N -0.579 5.579 21 Si 0.755 3.245 22 H -0.180 1.180 23 H -0.220 1.220 24 H -0.140 1.140 25 C -0.207 4.207 26 C -0.207 4.207 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.144 0.856 44 H 0.172 0.828 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.335 21.399 8.637 23.685 hybrid contribution 0.757 -0.680 -0.608 1.185 sum -4.579 20.718 8.029 22.686 Atomic orbital electron populations 1.22842 0.81028 1.02646 1.00723 1.88213 1.20101 1.28296 1.95449 1.23579 0.94659 0.85351 1.02306 1.21633 0.93029 1.01562 0.84606 1.57640 1.81958 1.25774 1.17074 1.21049 0.96785 0.92703 0.86572 1.22667 0.98588 0.98140 1.01032 1.22724 0.86791 0.96517 0.95935 1.87897 1.18011 1.33873 1.91170 1.22685 0.90699 0.92822 0.95469 1.22700 0.97128 0.98983 1.00871 1.04750 0.77695 0.72962 0.73476 1.93527 1.64476 1.77368 1.59776 1.93484 1.85862 1.82195 1.37499 1.30305 1.24543 1.03945 1.12310 1.18744 1.04305 0.89304 0.91133 1.20446 1.02317 1.29363 1.03147 0.95875 1.25978 1.02333 0.95334 0.93695 1.70073 1.35846 1.39916 1.12103 0.86010 0.78779 0.82061 0.77636 1.18015 1.22024 1.14020 1.23040 0.98953 1.01451 0.97244 1.23100 0.91004 1.03380 1.03216 0.90835 0.92204 0.93656 0.90148 0.91314 0.89286 0.85086 0.90881 0.89917 0.88026 0.86219 0.93506 0.86527 0.93580 0.88095 0.91654 0.85602 0.82836 0.92263 0.86902 0.90472 0.90308 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -12.19 8.57 -129.32 -1.11 -13.30 16 3 C 0.02 0.39 5.92 71.98 0.43 0.81 16 4 C 0.12 2.35 5.24 86.38 0.45 2.80 16 5 N -0.99 -27.60 2.62 -492.78 -1.29 -28.89 16 6 C 0.13 3.42 2.58 45.11 0.12 3.54 16 7 C -0.17 -3.01 5.52 30.68 0.17 -2.84 16 8 C 0.06 1.02 6.84 72.01 0.49 1.51 16 9 O -0.39 -7.75 10.77 -148.98 -1.60 -9.35 16 10 C 0.06 1.14 6.84 72.01 0.49 1.63 16 11 C -0.16 -3.28 4.14 30.68 0.13 -3.15 16 12 S 2.61 106.78 5.01 -56.49 -0.28 106.49 16 13 O -0.96 -42.66 14.94 -119.68 -1.79 -44.45 16 14 O -1.00 -51.97 16.05 -127.65 -2.05 -54.02 16 15 C -0.58 -21.57 5.80 71.98 0.42 -21.15 16 16 C -0.03 -1.48 0.86 -52.93 -0.05 -1.52 16 17 C -0.52 -30.50 8.49 25.60 0.22 -30.28 16 18 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 19 C 0.03 1.52 5.47 84.65 0.46 1.98 16 20 N -0.94 -60.81 13.96 21.45 0.30 -60.51 16 21 Si 0.93 42.65 25.12 68.60 1.72 44.37 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.22 -8.40 5.46 99.48 0.54 -7.86 16 25 C -0.17 -6.79 9.95 30.62 0.30 -6.49 16 26 C -0.17 -6.46 7.77 30.62 0.24 -6.22 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.27 4.72 -2.39 -0.01 1.26 16 32 H 0.09 1.84 7.59 -2.39 -0.02 1.82 16 33 H 0.13 1.51 6.65 -2.38 -0.02 1.50 16 34 H 0.07 2.35 6.81 -2.39 -0.02 2.33 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.37 6.76 -2.39 -0.02 1.35 16 37 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.64 5.80 -2.39 -0.01 1.63 16 42 H 0.06 1.56 8.01 -2.38 -0.02 1.54 16 43 H 0.13 4.58 6.02 -2.39 -0.01 4.56 16 44 H 0.15 4.07 8.11 -2.39 -0.02 4.05 16 45 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 47 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 48 H 0.08 3.24 7.53 -2.39 -0.02 3.22 16 49 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -85.97 385.20 -0.21 -86.19 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.77 Total: 31.05 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 5.12 Total: -57.57 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -0.99 Total: -89.41 kcal Atomic # 8 Polarization: -114.57 SS G_CDS: -6.55 Total: -121.12 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.72 Total: 44.37 kcal Atomic # 16 Polarization: 106.78 SS G_CDS: -0.28 Total: 106.49 kcal Total: -85.97 -0.21 -86.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867869560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.799 kcal (2) G-P(sol) polarization free energy of solvation -85.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds