Wall clock time and date at job start Wed Apr 1 2020 04:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99684 * 2 1 4 4 O 1.20827 * 120.00200 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99645 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47159 * 180.02562 * 5 3 2 7 7 C 1.53039 * 109.45912 * 174.99669 * 6 5 3 8 8 C 1.53194 * 109.30940 * 181.38495 * 7 6 5 9 9 N 1.46931 * 108.77842 * 305.36812 * 8 7 6 10 10 C 1.34776 * 120.62907 * 233.58679 * 9 8 7 11 11 O 1.21568 * 120.00285 * 354.97293 * 10 9 8 12 12 N 1.34779 * 119.99761 * 174.97538 * 10 9 8 13 13 C 1.39235 * 120.00017 * 185.80335 * 12 10 9 14 14 C 1.39691 * 119.57856 * 18.18235 * 13 12 10 15 15 C 1.38640 * 119.49641 * 180.02562 * 14 13 12 16 16 C 1.38350 * 118.67472 * 359.97438 * 15 14 13 17 17 C 1.40571 * 119.12790 * 359.97438 * 16 15 14 18 18 C 1.41342 * 119.78358 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00260 * 359.97438 * 18 17 16 20 20 C 1.40023 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.30746 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47455 * 89.99485 * 22 20 18 24 24 H 1.48503 * 109.46910 * 209.99477 * 22 20 18 25 25 H 1.48499 * 109.46954 * 329.99122 * 22 20 18 26 26 N 1.31913 * 119.57752 * 197.90627 * 13 12 10 27 27 C 1.46931 * 118.73559 * 53.85871 * 9 8 7 28 28 C 1.53032 * 109.45825 * 295.06977 * 6 5 3 29 29 H 1.09000 * 109.47060 * 299.99340 * 1 2 3 30 30 H 1.08991 * 109.47474 * 59.99939 * 1 2 3 31 31 H 1.09002 * 109.46706 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47609 * 60.00120 * 5 3 2 33 33 H 1.09002 * 109.47401 * 299.99823 * 5 3 2 34 34 H 1.09005 * 109.45652 * 55.02868 * 6 5 3 35 35 H 1.09002 * 109.49424 * 61.44073 * 7 6 5 36 36 H 1.08997 * 109.52640 * 301.35069 * 7 6 5 37 37 H 1.09002 * 109.58726 * 185.58151 * 8 7 6 38 38 H 1.09000 * 109.70123 * 65.22639 * 8 7 6 39 39 H 0.97005 * 119.99602 * 5.79404 * 12 10 9 40 40 H 1.08002 * 120.24444 * 359.97438 * 14 13 12 41 41 H 1.08005 * 120.66056 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.43594 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00374 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58281 * 65.93040 * 27 9 8 45 45 H 1.08994 * 109.58295 * 186.35550 * 27 9 8 46 46 H 1.09005 * 109.49882 * 298.56201 * 28 6 5 47 47 H 1.09001 * 109.50412 * 58.62676 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5232 2.8234 0.1254 8 6 5.9509 4.2940 0.1607 9 7 5.4055 4.9736 -1.0223 10 6 6.2129 5.6678 -1.8485 11 8 7.3874 5.8131 -1.5703 12 7 5.7182 6.2010 -2.9832 13 6 6.5736 6.8133 -3.8954 14 6 7.9444 6.5506 -3.8387 15 6 8.7947 7.1616 -4.7475 16 6 8.2543 8.0186 -5.6897 17 6 6.8663 8.2412 -5.6959 18 6 6.2995 9.1136 -6.6526 19 1 6.9323 9.6070 -7.3755 20 6 4.9176 9.3390 -6.6626 21 7 4.1515 8.7422 -5.7872 22 14 4.1683 10.4914 -7.9274 23 1 3.8007 9.7211 -9.1426 24 1 2.9533 11.1281 -7.3586 25 1 5.1553 11.5412 -8.2866 26 7 6.0785 7.6298 -4.8055 27 6 3.9623 4.8871 -1.2841 28 6 3.5578 3.4052 -1.3062 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 3.5385 3.2568 0.8429 35 1 5.9853 2.3305 -0.7300 36 1 5.8400 2.3303 1.0444 37 1 7.0389 4.3585 0.1500 38 1 5.5657 4.7671 1.0639 39 1 4.7662 6.1581 -3.1643 40 1 8.3389 5.8773 -3.0921 41 1 9.8575 6.9716 -4.7210 42 1 8.8905 8.5100 -6.4109 43 1 3.1942 8.8980 -5.7942 44 1 3.4163 5.4060 -0.4963 45 1 3.7379 5.3430 -2.2484 46 1 4.0385 2.9069 -2.1481 47 1 2.4753 3.3258 -1.4063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:01 Heat of formation + Delta-G solvation = -64.418465 kcal Electronic energy + Delta-G solvation = -30329.651788 eV Core-core repulsion = 26092.178519 eV Total energy + Delta-G solvation = -4237.473269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.99466 -40.30497 -38.48396 -37.47875 -36.61742 -34.34756 -34.03988 -33.15365 -31.13755 -30.31660 -29.96684 -28.87876 -27.58740 -25.46194 -24.33069 -23.50550 -22.04744 -21.54274 -21.07593 -20.35384 -19.25936 -18.15682 -17.81371 -17.37188 -16.92039 -16.82413 -16.26685 -15.39501 -15.35211 -14.85248 -14.68707 -14.47403 -14.32293 -14.13954 -13.87439 -13.69352 -13.50392 -13.30957 -12.89892 -12.82786 -12.44653 -12.34953 -12.24954 -12.07783 -11.91464 -11.43812 -11.28458 -11.23448 -11.17420 -11.06491 -10.98068 -10.87335 -10.62721 -10.60759 -10.38111 -10.06421 -9.82411 -9.25014 -9.01021 -8.49649 -7.97799 -7.62821 -7.00523 -6.37255 -4.46226 1.88075 2.37148 2.70270 2.89322 2.99618 3.10682 3.14131 3.28585 3.71407 3.97667 4.19703 4.26675 4.43326 4.45115 4.73438 4.76990 4.81542 4.83321 4.92998 5.04389 5.13299 5.16076 5.20513 5.25437 5.40106 5.54706 5.69672 5.72980 5.80619 5.86201 5.90187 5.97100 6.11073 6.19493 6.20287 6.48149 6.56668 6.81059 6.85851 7.00734 7.11319 7.24847 7.41988 7.56544 7.65061 7.95433 8.08660 8.21524 8.44515 8.74568 8.93275 9.09034 10.10333 10.35337 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002487 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.101495 B =11255.388084 C =13035.822014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.500 6.500 5 C -0.110 4.110 6 C -0.076 4.076 7 C -0.129 4.129 8 C 0.132 3.868 9 N -0.631 5.631 10 C 0.711 3.289 11 O -0.570 6.570 12 N -0.659 5.659 13 C 0.373 3.627 14 C -0.313 4.313 15 C -0.049 4.049 16 C -0.292 4.292 17 C 0.280 3.720 18 C -0.436 4.436 19 H 0.085 0.915 20 C 0.071 3.929 21 N -0.724 5.724 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.262 1.262 26 N -0.509 5.509 27 C 0.112 3.888 28 C -0.136 4.136 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.270 0.730 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 -16.828 12.729 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.388 6.388 5 C -0.147 4.147 6 C -0.094 4.094 7 C -0.167 4.167 8 C 0.009 3.991 9 N -0.370 5.370 10 C 0.412 3.588 11 O -0.447 6.447 12 N -0.307 5.307 13 C 0.138 3.862 14 C -0.338 4.338 15 C -0.074 4.074 16 C -0.315 4.315 17 C 0.154 3.846 18 C -0.468 4.468 19 H 0.103 0.897 20 C -0.153 4.153 21 N -0.346 5.346 22 Si 0.731 3.269 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.186 1.186 26 N -0.228 5.228 27 C -0.011 4.011 28 C -0.175 4.175 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.240 0.760 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.015 -16.301 12.977 22.324 hybrid contribution -0.397 0.371 -0.636 0.836 sum -8.413 -15.930 12.342 21.837 Atomic orbital electron populations 1.23264 0.76285 1.03663 1.02663 1.86513 1.23538 1.33787 1.84192 1.23909 0.92380 0.81266 0.72257 1.90667 1.67251 1.36102 1.44748 1.21534 0.87217 0.99978 1.06017 1.21014 0.95994 0.92678 0.99738 1.22003 0.94469 0.97353 1.02921 1.21369 1.00794 0.90485 0.86444 1.47307 1.07329 1.54944 1.27415 1.15672 0.84681 0.78706 0.79713 1.90807 1.14887 1.64270 1.74690 1.42470 1.11303 1.57987 1.18988 1.18250 0.86721 0.91642 0.89591 1.21662 0.92821 1.12142 1.07132 1.20805 0.97461 0.95230 0.93920 1.21690 0.96506 1.08527 1.04764 1.18169 0.87307 0.89687 0.89478 1.19545 0.92331 1.22240 1.12686 0.89733 1.26031 0.97628 0.95765 0.95874 1.70121 1.05002 1.31530 1.27912 0.86349 0.79000 0.80687 0.80867 1.19507 1.20264 1.18597 1.68021 1.37527 1.10655 1.06573 1.21706 0.80761 0.96623 1.02023 1.22203 1.02726 0.95515 0.97018 0.91895 0.91765 0.88175 0.87472 0.87485 0.89841 0.90976 0.90445 0.88554 0.91845 0.75991 0.84859 0.88413 0.88313 0.91925 0.91111 0.89973 0.91478 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.01 10.57 -39.25 -0.41 -3.43 16 3 C 0.46 4.10 7.67 36.00 0.28 4.38 16 4 O -0.50 -5.80 13.72 -18.75 -0.26 -6.05 16 5 C -0.11 -0.72 5.29 -27.88 -0.15 -0.87 16 6 C -0.08 -0.62 1.80 -90.58 -0.16 -0.78 16 7 C -0.13 -1.06 5.36 -26.61 -0.14 -1.20 16 8 C 0.13 1.51 6.42 -3.71 -0.02 1.49 16 9 N -0.63 -9.09 2.97 -178.23 -0.53 -9.62 16 10 C 0.71 13.84 8.14 -86.92 -0.71 13.13 16 11 O -0.57 -12.78 12.55 5.31 0.07 -12.71 16 12 N -0.66 -14.00 5.33 -15.79 -0.08 -14.09 16 13 C 0.37 9.57 7.52 -155.00 -1.16 8.40 16 14 C -0.31 -7.89 8.84 -38.89 -0.34 -8.23 16 15 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 16 C -0.29 -7.51 9.83 -38.66 -0.38 -7.89 16 17 C 0.28 7.87 6.55 -85.00 -0.56 7.32 16 18 C -0.44 -11.81 9.14 -37.73 -0.34 -12.16 16 19 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 20 C 0.07 1.82 5.50 -17.35 -0.10 1.73 16 21 N -0.72 -19.07 11.46 55.55 0.64 -18.44 16 22 Si 0.91 18.73 29.56 -169.99 -5.02 13.71 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 26 N -0.51 -14.20 7.89 -10.26 -0.08 -14.28 16 27 C 0.11 1.36 6.46 -3.48 -0.02 1.34 16 28 C -0.14 -1.39 5.13 -26.39 -0.14 -1.53 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 1.25 7.04 -51.93 -0.37 0.89 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 7.82 6.28 -40.82 -0.26 7.57 16 40 H 0.13 3.33 5.29 -52.55 -0.28 3.05 16 41 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 42 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 43 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.07 5.57 -51.93 -0.29 0.78 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -33.98 381.40 -9.75 -43.73 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.53 Total: 10.63 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -3.29 Total: 4.80 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.06 Total: -56.43 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.61 Total: -22.19 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.98 -9.75 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.684 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds