Wall clock time and date at job start Wed Apr 1 2020 04:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99684 * 2 1 4 4 O 1.20827 * 120.00200 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99645 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47159 * 180.02562 * 5 3 2 7 7 C 1.53039 * 109.45912 * 174.99669 * 6 5 3 8 8 C 1.53194 * 109.30940 * 181.38495 * 7 6 5 9 9 N 1.46931 * 108.77842 * 305.36812 * 8 7 6 10 10 C 1.34776 * 120.62907 * 233.58679 * 9 8 7 11 11 O 1.21568 * 120.00285 * 354.97293 * 10 9 8 12 12 N 1.34779 * 119.99761 * 174.97538 * 10 9 8 13 13 C 1.39235 * 120.00017 * 185.80335 * 12 10 9 14 14 C 1.39691 * 119.57856 * 18.18235 * 13 12 10 15 15 C 1.38640 * 119.49641 * 180.02562 * 14 13 12 16 16 C 1.38350 * 118.67472 * 359.97438 * 15 14 13 17 17 C 1.40571 * 119.12790 * 359.97438 * 16 15 14 18 18 C 1.41342 * 119.78358 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00260 * 359.97438 * 18 17 16 20 20 C 1.40023 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.30746 * 120.00148 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47455 * 89.99485 * 22 20 18 24 24 H 1.48503 * 109.46910 * 209.99477 * 22 20 18 25 25 H 1.48499 * 109.46954 * 329.99122 * 22 20 18 26 26 N 1.31913 * 119.57752 * 197.90627 * 13 12 10 27 27 C 1.46931 * 118.73559 * 53.85871 * 9 8 7 28 28 C 1.53032 * 109.45825 * 295.06977 * 6 5 3 29 29 H 1.09000 * 109.47060 * 299.99340 * 1 2 3 30 30 H 1.08991 * 109.47474 * 59.99939 * 1 2 3 31 31 H 1.09002 * 109.46706 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47609 * 60.00120 * 5 3 2 33 33 H 1.09002 * 109.47401 * 299.99823 * 5 3 2 34 34 H 1.09005 * 109.45652 * 55.02868 * 6 5 3 35 35 H 1.09002 * 109.49424 * 61.44073 * 7 6 5 36 36 H 1.08997 * 109.52640 * 301.35069 * 7 6 5 37 37 H 1.09002 * 109.58726 * 185.58151 * 8 7 6 38 38 H 1.09000 * 109.70123 * 65.22639 * 8 7 6 39 39 H 0.97005 * 119.99602 * 5.79404 * 12 10 9 40 40 H 1.08002 * 120.24444 * 359.97438 * 14 13 12 41 41 H 1.08005 * 120.66056 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.43594 * 179.97438 * 16 15 14 43 43 H 0.96999 * 120.00374 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58281 * 65.93040 * 27 9 8 45 45 H 1.08994 * 109.58295 * 186.35550 * 27 9 8 46 46 H 1.09005 * 109.49882 * 298.56201 * 28 6 5 47 47 H 1.09001 * 109.50412 * 58.62676 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5232 2.8234 0.1254 8 6 5.9509 4.2940 0.1607 9 7 5.4055 4.9736 -1.0223 10 6 6.2129 5.6678 -1.8485 11 8 7.3874 5.8131 -1.5703 12 7 5.7182 6.2010 -2.9832 13 6 6.5736 6.8133 -3.8954 14 6 7.9444 6.5506 -3.8387 15 6 8.7947 7.1616 -4.7475 16 6 8.2543 8.0186 -5.6897 17 6 6.8663 8.2412 -5.6959 18 6 6.2995 9.1136 -6.6526 19 1 6.9323 9.6070 -7.3755 20 6 4.9176 9.3390 -6.6626 21 7 4.1515 8.7422 -5.7872 22 14 4.1683 10.4914 -7.9274 23 1 3.8007 9.7211 -9.1426 24 1 2.9533 11.1281 -7.3586 25 1 5.1553 11.5412 -8.2866 26 7 6.0785 7.6298 -4.8055 27 6 3.9623 4.8871 -1.2841 28 6 3.5578 3.4052 -1.3062 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 3.5385 3.2568 0.8429 35 1 5.9853 2.3305 -0.7300 36 1 5.8400 2.3303 1.0444 37 1 7.0389 4.3585 0.1500 38 1 5.5657 4.7671 1.0639 39 1 4.7662 6.1581 -3.1643 40 1 8.3389 5.8773 -3.0921 41 1 9.8575 6.9716 -4.7210 42 1 8.8905 8.5100 -6.4109 43 1 3.1942 8.8980 -5.7942 44 1 3.4163 5.4060 -0.4963 45 1 3.7379 5.3430 -2.2484 46 1 4.0385 2.9069 -2.1481 47 1 2.4753 3.3258 -1.4063 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881144059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:00 Heat of formation + Delta-G solvation = -84.101048 kcal Electronic energy + Delta-G solvation = -30330.505289 eV Core-core repulsion = 26092.178519 eV Total energy + Delta-G solvation = -4238.326770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.96909 -41.47695 -40.00048 -38.79184 -37.42776 -36.09163 -35.33841 -34.75242 -32.38471 -32.02935 -31.15160 -30.28778 -28.25277 -27.37416 -25.40067 -24.46336 -23.51163 -23.41936 -22.10689 -21.30456 -20.62426 -19.52027 -19.22996 -18.51160 -18.02053 -17.56800 -17.43313 -16.96222 -16.74752 -16.35649 -16.21273 -15.72610 -15.46844 -15.27840 -14.95748 -14.76482 -14.63016 -14.53294 -14.33770 -14.01036 -13.82960 -13.73445 -13.21150 -12.93337 -12.91752 -12.84431 -12.78554 -12.65597 -12.57234 -12.24286 -11.99304 -11.86259 -11.82772 -11.71348 -11.61774 -11.45806 -11.14741 -11.06256 -10.76031 -9.98907 -9.73754 -9.60546 -8.90942 -8.29728 -6.50010 0.82231 1.13266 1.23073 1.42249 1.50183 1.54420 1.57204 1.82535 2.09411 2.24350 2.78548 2.89532 3.59071 3.69425 3.77593 3.93689 4.02238 4.08653 4.23286 4.31289 4.32744 4.33936 4.37096 4.50764 4.59963 4.60880 4.65445 4.70953 4.76810 4.85370 4.87347 4.91205 4.96694 4.96885 5.06159 5.07258 5.12521 5.24007 5.42775 5.47940 5.54764 5.65831 5.70569 5.81255 5.99822 6.17949 6.29361 6.71125 6.77947 6.84281 6.98662 7.46589 8.11637 8.45733 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002487 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.101495 B =11255.388084 C =13035.822014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.457 3.543 4 O -0.534 6.534 5 C -0.104 4.104 6 C -0.070 4.070 7 C -0.117 4.117 8 C 0.123 3.877 9 N -0.618 5.618 10 C 0.706 3.294 11 O -0.602 6.602 12 N -0.658 5.658 13 C 0.363 3.637 14 C -0.326 4.326 15 C -0.047 4.047 16 C -0.310 4.310 17 C 0.245 3.755 18 C -0.465 4.465 19 H 0.092 0.908 20 C 0.025 3.975 21 N -0.755 5.755 22 Si 0.989 3.011 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.257 1.257 26 N -0.535 5.535 27 C 0.109 3.891 28 C -0.129 4.129 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.408 0.592 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.278 0.722 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.178 -18.043 13.414 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.302 3.698 4 O -0.423 6.423 5 C -0.141 4.141 6 C -0.089 4.089 7 C -0.155 4.155 8 C 0.001 3.999 9 N -0.356 5.356 10 C 0.408 3.592 11 O -0.482 6.482 12 N -0.308 5.308 13 C 0.127 3.873 14 C -0.351 4.351 15 C -0.072 4.072 16 C -0.332 4.332 17 C 0.118 3.882 18 C -0.497 4.497 19 H 0.110 0.890 20 C -0.197 4.197 21 N -0.377 5.377 22 Si 0.809 3.191 23 H -0.187 1.187 24 H -0.194 1.194 25 H -0.180 1.180 26 N -0.255 5.255 27 C -0.014 4.014 28 C -0.167 4.167 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.247 0.753 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.707 -17.580 13.714 23.936 hybrid contribution -0.237 0.669 -0.743 1.028 sum -8.943 -16.911 12.970 23.113 Atomic orbital electron populations 1.23476 0.75284 1.05409 1.02300 1.86509 1.24630 1.33445 1.83851 1.24382 0.93263 0.80939 0.71204 1.90658 1.68137 1.37105 1.46449 1.21559 0.85597 0.98833 1.08094 1.20944 0.95877 0.93852 0.98212 1.21938 0.94197 0.94836 1.04525 1.21699 0.99954 0.92656 0.85587 1.47410 1.07801 1.53354 1.27000 1.15856 0.84786 0.78897 0.79689 1.90761 1.16462 1.65588 1.75410 1.42432 1.11209 1.58006 1.19140 1.18599 0.87742 0.91276 0.89714 1.21863 0.93038 1.12628 1.07559 1.21173 0.99108 0.94079 0.92827 1.21878 0.96061 1.09456 1.05833 1.18712 0.88669 0.90527 0.90251 1.19937 0.93730 1.22868 1.13162 0.88965 1.26979 0.97470 0.97259 0.97961 1.70207 1.05683 1.32469 1.29321 0.85111 0.78028 0.78163 0.77782 1.18678 1.19393 1.18023 1.68048 1.38189 1.11780 1.07506 1.21867 0.79340 0.98416 1.01761 1.22129 1.02288 0.93967 0.98359 0.91996 0.92443 0.85438 0.86220 0.84407 0.89833 0.91499 0.86926 0.90220 0.90030 0.75322 0.84655 0.85079 0.86787 0.91125 0.89871 0.91342 0.91981 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.37 -5.41 10.57 -51.38 -0.54 -5.96 16 3 C 0.46 7.35 7.67 71.23 0.55 7.90 16 4 O -0.53 -11.87 13.72 21.96 0.30 -11.56 16 5 C -0.10 -1.04 5.29 29.85 0.16 -0.89 16 6 C -0.07 -0.98 1.80 -10.77 -0.02 -1.00 16 7 C -0.12 -1.60 5.36 30.67 0.16 -1.43 16 8 C 0.12 2.63 6.42 86.36 0.55 3.19 16 9 N -0.62 -17.66 2.97 -836.06 -2.48 -20.14 16 10 C 0.71 28.05 8.14 179.05 1.46 29.51 16 11 O -0.60 -27.60 12.55 -3.93 -0.05 -27.65 16 12 N -0.66 -28.94 5.33 -322.13 -1.72 -30.66 16 13 C 0.36 19.20 7.52 133.26 1.00 20.20 16 14 C -0.33 -16.78 8.84 22.72 0.20 -16.58 16 15 C -0.05 -2.32 10.15 22.39 0.23 -2.09 16 16 C -0.31 -16.18 9.83 22.87 0.22 -15.95 16 17 C 0.24 14.16 6.55 40.19 0.26 14.42 16 18 C -0.47 -25.70 9.14 23.47 0.21 -25.48 16 19 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 20 C 0.02 1.28 5.50 85.29 0.47 1.75 16 21 N -0.75 -40.48 11.46 21.84 0.25 -40.23 16 22 Si 0.99 38.31 29.56 68.60 2.03 40.34 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 26 N -0.54 -30.90 7.89 -186.36 -1.47 -32.37 16 27 C 0.11 2.61 6.46 86.51 0.56 3.17 16 28 C -0.13 -2.52 5.13 30.82 0.16 -2.36 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 1.24 7.96 -2.38 -0.02 1.22 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 2.02 7.04 -2.39 -0.02 2.00 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.41 16.56 6.28 -92.70 -0.58 15.97 16 40 H 0.14 6.90 5.29 -3.86 -0.02 6.88 16 41 H 0.13 5.37 8.06 -2.91 -0.02 5.35 16 42 H 0.11 5.41 8.06 -2.91 -0.02 5.39 16 43 H 0.28 13.41 8.29 -92.71 -0.77 12.64 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.83 5.57 -2.39 -0.01 1.82 16 46 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.08 1.79 5.93 -2.39 -0.01 1.77 16 Total: -1.00 -76.16 381.40 4.12 -72.04 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: 0.42 Total: 40.34 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 7.38 Total: 15.84 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.42 Total: -123.40 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.29 Total: -45.17 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -76.16 4.12 -72.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.059 kcal (2) G-P(sol) polarization free energy of solvation -76.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds