Wall clock time and date at job start Wed Apr 1 2020 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00100 * 2 1 4 4 C 1.53000 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.47068 * 175.37491 * 4 3 2 6 6 N 1.46496 * 109.47093 * 295.36955 * 4 3 2 7 7 S 1.65595 * 120.00530 * 265.00161 * 6 4 3 8 8 O 1.42093 * 104.27882 * 308.93252 * 7 6 4 9 9 O 1.42105 * 104.27843 * 181.07108 * 7 6 4 10 10 C 1.81403 * 104.44815 * 65.00337 * 7 6 4 11 11 C 1.52998 * 109.47172 * 173.80108 * 10 7 6 12 12 C 1.50700 * 115.55296 * 40.47170 * 11 10 7 13 13 H 1.07999 * 119.99692 * 273.68474 * 12 11 10 14 14 C 1.37875 * 120.00369 * 93.67753 * 12 11 10 15 15 N 1.31517 * 119.99702 * 354.37378 * 14 12 11 16 16 Si 1.86793 * 120.00378 * 174.36858 * 14 12 11 17 17 H 1.48505 * 109.46902 * 90.00267 * 16 14 12 18 18 H 1.48498 * 109.47431 * 210.00272 * 16 14 12 19 19 H 1.48507 * 109.47198 * 330.00723 * 16 14 12 20 20 C 1.53000 * 117.49889 * 254.76182 * 11 10 7 21 21 C 1.52991 * 60.00241 * 252.51042 * 20 11 10 22 22 C 1.52992 * 109.47039 * 55.37689 * 4 3 2 23 23 H 1.08998 * 109.52196 * 304.38037 * 22 4 3 24 24 C 1.53185 * 109.52148 * 184.26078 * 22 4 3 25 25 C 1.53179 * 109.03838 * 183.11522 * 24 22 4 26 26 C 1.53087 * 109.16331 * 56.97646 * 25 24 22 27 27 O 1.42906 * 109.41992 * 302.39260 * 26 25 24 28 28 C 1.42905 * 114.09550 * 61.15739 * 27 26 25 29 29 H 1.09002 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47269 * 300.00184 * 1 2 3 31 31 H 1.09002 * 109.46795 * 60.00320 * 1 2 3 32 32 H 1.09004 * 109.47253 * 59.99342 * 3 2 1 33 33 H 1.09006 * 109.47184 * 300.00106 * 3 2 1 34 34 H 0.97006 * 119.99518 * 85.00552 * 6 4 3 35 35 H 1.09002 * 109.46929 * 293.79395 * 10 7 6 36 36 H 1.08995 * 109.47482 * 53.79826 * 10 7 6 37 37 H 0.97002 * 120.00149 * 184.99650 * 15 14 12 38 38 H 1.09000 * 117.49605 * 0.02562 * 20 11 10 39 39 H 1.09002 * 117.49921 * 145.01947 * 20 11 10 40 40 H 1.09004 * 117.50191 * 252.51051 * 21 20 11 41 41 H 1.09004 * 117.50378 * 107.48638 * 21 20 11 42 42 H 1.09003 * 109.53887 * 302.97705 * 24 22 4 43 43 H 1.08994 * 109.54607 * 63.15300 * 24 22 4 44 44 H 1.08998 * 109.52262 * 176.88492 * 25 24 22 45 45 H 1.09001 * 109.51793 * 297.07098 * 25 24 22 46 46 H 1.09002 * 109.48088 * 62.37612 * 26 25 24 47 47 H 1.09004 * 109.47860 * 182.40026 * 26 25 24 48 48 H 1.08999 * 109.48154 * 178.86307 * 28 27 26 49 49 H 1.09002 * 109.47762 * 58.82760 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1771 -0.0822 6 7 3.9750 0.5564 1.2489 7 16 4.4440 1.4966 2.5288 8 8 5.3934 2.3962 1.9735 9 8 4.8194 0.5619 3.5313 10 6 2.9375 2.3819 3.0161 11 6 3.2041 3.1758 4.2965 12 6 4.5440 3.8618 4.3690 13 1 5.4063 3.3250 4.7358 14 6 4.6690 5.1747 3.9668 15 7 3.6472 5.7942 3.4174 16 14 6.2894 6.0735 4.2025 17 1 7.1399 5.8842 2.9999 18 1 6.0279 7.5218 4.4007 19 1 6.9888 5.5290 5.3940 20 6 2.6174 2.6313 5.6004 21 6 2.0141 3.8790 4.9524 22 6 3.9796 0.3271 -1.1860 23 1 3.4762 -0.6388 -1.1460 24 6 5.4958 0.1169 -1.1266 25 6 5.9390 -0.6760 -2.3600 26 6 5.5054 0.0739 -3.6221 27 8 4.0891 0.2632 -3.5994 28 6 3.6217 1.0384 -2.4936 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.9914 -0.4105 1.3257 35 1 2.6440 3.0654 2.2194 36 1 2.1360 1.6649 3.1934 37 1 3.7553 6.6929 3.0686 38 1 2.0418 1.7073 5.5461 39 1 3.2006 2.7690 6.5110 40 1 2.2003 4.8377 5.4366 41 1 1.0412 3.7762 4.4716 42 1 5.9978 1.0844 -1.1155 43 1 5.7520 -0.4372 -0.2237 44 1 7.0237 -0.7825 -2.3541 45 1 5.4751 -1.6623 -2.3448 46 1 6.0012 1.0441 -3.6569 47 1 5.7806 -0.5068 -4.5026 48 1 2.5398 1.1524 -2.5610 49 1 4.0929 2.0211 -2.5137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885751743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:02 Heat of formation + Delta-G solvation = -174.229088 kcal Electronic energy + Delta-G solvation = -31167.111926 eV Core-core repulsion = 27028.028111 eV Total energy + Delta-G solvation = -4139.083815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.75145 -38.92669 -38.55429 -37.88962 -36.85977 -36.61401 -34.08743 -33.92951 -32.29256 -30.10186 -29.34422 -27.52838 -26.96684 -25.76382 -24.98596 -22.93815 -22.29107 -21.53974 -21.12119 -20.21802 -18.62350 -18.35592 -17.76831 -17.18679 -16.95154 -16.84290 -16.78483 -16.55410 -16.37183 -16.17253 -15.81314 -15.62241 -15.37563 -14.89415 -14.75571 -14.19350 -13.98585 -13.78427 -13.67789 -13.55833 -13.50024 -13.08724 -13.02874 -12.90488 -12.85915 -12.81784 -12.47621 -12.43143 -12.32932 -12.09009 -12.07796 -11.87453 -11.84227 -11.60136 -11.51464 -11.21357 -10.92528 -10.57175 -10.48704 -10.40779 -10.37224 -9.90081 -8.22691 -6.40344 -0.46125 1.35463 1.40315 1.46259 2.08863 2.38533 2.86513 2.94507 3.00812 3.06305 3.34662 3.52505 3.58964 3.77854 3.86521 3.96882 4.06326 4.12213 4.22456 4.27783 4.28881 4.37372 4.42836 4.53783 4.56218 4.59695 4.61274 4.66887 4.68564 4.76684 4.81640 4.84413 4.88347 4.94520 4.98969 4.99752 5.10112 5.15553 5.20297 5.27896 5.41893 5.46040 5.64552 5.66960 6.16919 6.19465 6.23896 6.27806 6.67700 7.36015 8.83373 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.004152 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.850291 B = 6742.744766 C = 7741.317752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.392 6.392 3 C 0.032 3.968 4 C 0.153 3.847 5 H 0.097 0.903 6 N -1.105 6.105 7 S 2.631 3.369 8 O -0.985 6.985 9 O -1.005 7.005 10 C -0.555 4.555 11 C 0.010 3.990 12 C -0.552 4.552 13 H 0.044 0.956 14 C 0.058 3.942 15 N -0.883 5.883 16 Si 0.925 3.075 17 H -0.277 1.277 18 H -0.269 1.269 19 H -0.270 1.270 20 C -0.196 4.196 21 C -0.128 4.128 22 C -0.108 4.108 23 H 0.097 0.903 24 C -0.127 4.127 25 C -0.150 4.150 26 C 0.054 3.946 27 O -0.394 6.394 28 C 0.066 3.934 29 H 0.097 0.903 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.422 0.578 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.267 0.733 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 -10.913 -13.638 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C -0.046 4.046 4 C 0.046 3.954 5 H 0.115 0.885 6 N -0.864 5.864 7 S 2.728 3.272 8 O -0.974 6.974 9 O -0.995 6.995 10 C -0.688 4.688 11 C 0.008 3.992 12 C -0.590 4.590 13 H 0.062 0.938 14 C -0.147 4.147 15 N -0.518 5.518 16 Si 0.750 3.250 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.194 1.194 20 C -0.233 4.233 21 C -0.167 4.167 22 C -0.129 4.129 23 H 0.115 0.885 24 C -0.165 4.165 25 C -0.187 4.187 26 C -0.023 4.023 27 O -0.312 6.312 28 C -0.012 4.012 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.257 0.743 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.896 -10.736 -13.468 17.906 hybrid contribution 0.299 0.881 0.635 1.126 sum -4.597 -9.855 -12.834 16.821 Atomic orbital electron populations 1.22942 0.80007 1.03743 1.00739 1.87853 1.20766 1.26990 1.95540 1.23321 0.93057 0.85930 1.02337 1.20988 0.92696 0.97620 0.84132 0.88503 1.55511 1.84805 1.19743 1.26332 1.04083 0.77274 0.73294 0.72501 1.93479 1.59134 1.67021 1.77792 1.93443 1.82994 1.62724 1.60377 1.29982 1.19389 1.11160 1.08257 1.18352 0.94460 0.98866 0.87511 1.20687 0.93454 0.97875 1.46951 0.93804 1.25389 0.98652 0.97443 0.93189 1.70002 1.30721 1.13935 1.37126 0.86060 0.81474 0.78524 0.78961 1.20295 1.19327 1.19425 1.23252 1.04693 0.97773 0.97632 1.22368 0.96184 0.94678 1.03456 1.21844 0.96585 1.00883 0.93563 0.88506 1.21701 0.95149 1.00787 0.98871 1.22163 1.02258 0.99805 0.94511 1.22761 0.80954 0.99934 0.98628 1.87908 1.23130 1.73846 1.46349 1.22704 1.00837 0.93267 0.84366 0.88476 0.93978 0.92807 0.92581 0.89771 0.74279 0.85538 0.84884 0.92358 0.88340 0.90451 0.91585 0.89527 0.92565 0.91837 0.89785 0.90779 0.92943 0.87181 0.87382 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.59 16 2 O -0.39 -8.32 9.70 -148.98 -1.45 -9.77 16 3 C 0.03 0.69 5.38 71.98 0.39 1.08 16 4 C 0.15 3.89 2.18 44.99 0.10 3.99 16 5 H 0.10 2.70 7.48 -2.38 -0.02 2.68 16 6 N -1.10 -32.51 4.45 -169.40 -0.75 -33.26 16 7 S 2.63 107.65 4.63 -56.49 -0.26 107.38 16 8 O -0.98 -47.81 16.53 -127.65 -2.11 -49.92 16 9 O -1.00 -46.47 18.08 -127.65 -2.31 -48.77 16 10 C -0.56 -21.85 5.00 71.98 0.36 -21.49 16 11 C 0.01 0.48 1.80 -52.93 -0.10 0.38 16 12 C -0.55 -30.52 6.97 25.60 0.18 -30.34 16 13 H 0.04 2.56 7.82 -2.91 -0.02 2.54 16 14 C 0.06 3.18 5.36 84.65 0.45 3.63 16 15 N -0.88 -47.88 12.38 21.45 0.27 -47.62 16 16 Si 0.92 44.36 29.54 68.60 2.03 46.38 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 20 C -0.20 -8.29 9.88 30.59 0.30 -7.99 16 21 C -0.13 -5.66 8.97 30.59 0.27 -5.39 16 22 C -0.11 -2.39 1.94 -10.70 -0.02 -2.41 16 23 H 0.10 2.15 7.43 -2.39 -0.02 2.13 16 24 C -0.13 -2.98 5.05 30.72 0.16 -2.82 16 25 C -0.15 -2.75 6.14 30.68 0.19 -2.56 16 26 C 0.05 0.95 6.84 72.01 0.49 1.44 16 27 O -0.39 -8.49 10.77 -148.98 -1.60 -10.10 16 28 C 0.07 1.31 5.81 72.01 0.42 1.73 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.29 5.93 -2.38 -0.01 1.27 16 33 H 0.08 1.43 6.85 -2.38 -0.02 1.41 16 34 H 0.42 10.97 8.72 -96.74 -0.84 10.12 16 35 H 0.13 4.85 7.28 -2.39 -0.02 4.84 16 36 H 0.13 4.22 7.95 -2.39 -0.02 4.21 16 37 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 38 H 0.10 3.52 8.09 -2.39 -0.02 3.50 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.07 3.21 7.98 -2.38 -0.02 3.19 16 41 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.58 7.55 -2.39 -0.02 1.56 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.11 1.85 6.79 -2.39 -0.02 1.83 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.42 397.47 -1.65 -72.08 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.09 Total: 32.76 kcal Atomic # 6 Polarization: -63.60 SS G_CDS: 4.44 Total: -59.16 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -0.49 Total: -80.88 kcal Atomic # 8 Polarization: -111.10 SS G_CDS: -7.47 Total: -118.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 107.65 SS G_CDS: -0.26 Total: 107.38 kcal Total: -70.42 -1.65 -72.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885751743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.151 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds