Wall clock time and date at job start Wed Apr 1 2020 04:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99896 * 2 1 4 4 C 1.53005 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47072 * 185.00116 * 4 3 2 6 6 N 1.46507 * 109.46916 * 65.00377 * 4 3 2 7 7 S 1.65593 * 120.00100 * 94.99937 * 6 4 3 8 8 O 1.42097 * 104.27827 * 181.06895 * 7 6 4 9 9 O 1.42105 * 104.27835 * 308.92741 * 7 6 4 10 10 C 1.81402 * 104.45051 * 64.99801 * 7 6 4 11 11 C 1.53001 * 109.47108 * 172.63493 * 10 7 6 12 12 C 1.50700 * 115.55017 * 39.95075 * 11 10 7 13 13 H 1.07999 * 119.99940 * 272.10866 * 12 11 10 14 14 C 1.37876 * 120.00101 * 92.11226 * 12 11 10 15 15 N 1.31516 * 119.99954 * 174.02924 * 14 12 11 16 16 Si 1.86806 * 119.99912 * 354.02292 * 14 12 11 17 17 H 1.48497 * 109.46723 * 93.58003 * 16 14 12 18 18 H 1.48494 * 109.47084 * 213.57908 * 16 14 12 19 19 H 1.48500 * 109.47060 * 333.58114 * 16 14 12 20 20 C 1.52995 * 117.49992 * 254.24058 * 11 10 7 21 21 C 1.52989 * 60.00220 * 252.51342 * 20 11 10 22 22 C 1.52992 * 109.47173 * 305.00291 * 4 3 2 23 23 H 1.08998 * 109.52851 * 59.87636 * 22 4 3 24 24 C 1.53181 * 109.57588 * 299.71278 * 22 4 3 25 25 C 1.53174 * 109.04760 * 183.09009 * 24 22 4 26 26 C 1.53091 * 109.16282 * 56.96564 * 25 24 22 27 27 O 1.42908 * 109.42291 * 302.40678 * 26 25 24 28 28 C 1.42897 * 114.09783 * 61.15428 * 27 26 25 29 29 H 1.08998 * 109.46588 * 299.99799 * 1 2 3 30 30 H 1.09000 * 109.46837 * 59.99931 * 1 2 3 31 31 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46969 * 60.00578 * 3 2 1 33 33 H 1.08997 * 109.47588 * 299.99859 * 3 2 1 34 34 H 0.96995 * 119.99852 * 274.99503 * 6 4 3 35 35 H 1.08996 * 109.47034 * 292.63158 * 10 7 6 36 36 H 1.08997 * 109.47241 * 52.63203 * 10 7 6 37 37 H 0.97003 * 119.99825 * 179.97438 * 15 14 12 38 38 H 1.09007 * 117.49842 * 0.02562 * 20 11 10 39 39 H 1.08996 * 117.50178 * 145.01596 * 20 11 10 40 40 H 1.09007 * 117.50028 * 252.51122 * 21 20 11 41 41 H 1.08996 * 117.50531 * 107.49237 * 21 20 11 42 42 H 1.08999 * 109.54397 * 302.95267 * 24 22 4 43 43 H 1.09006 * 109.54077 * 63.22034 * 24 22 4 44 44 H 1.09002 * 109.51611 * 297.06695 * 25 24 22 45 45 H 1.08997 * 109.53488 * 176.87654 * 25 24 22 46 46 H 1.09005 * 109.47979 * 182.42411 * 26 25 24 47 47 H 1.08993 * 109.47894 * 62.39631 * 26 25 24 48 48 H 1.09005 * 109.48078 * 58.81811 * 28 27 26 49 49 H 1.08992 * 109.48228 * 178.85657 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 7 3.9767 0.5640 -1.2510 7 16 4.4474 1.5121 -2.5244 8 8 4.7756 0.5845 -3.5495 9 8 3.3800 2.4361 -2.6868 10 6 5.9378 2.3593 -1.9314 11 6 6.5782 3.1328 -3.0858 12 6 5.6168 3.8321 -4.0120 13 1 5.2050 3.3060 -4.8605 14 6 5.2630 5.1437 -3.7761 15 7 4.5185 5.7905 -4.6461 16 14 5.8410 6.0018 -2.2208 17 1 7.1038 6.7321 -2.4986 18 1 4.8023 6.9626 -1.7704 19 1 6.0765 4.9927 -1.1570 20 6 7.8575 2.5583 -3.6973 21 6 7.9239 3.8108 -2.8212 22 6 3.9781 0.3198 1.1825 23 1 3.5338 -0.6717 1.0950 24 6 3.5241 0.9703 2.4929 25 6 4.0395 0.1363 3.6698 26 6 5.5631 0.0214 3.5753 27 8 5.9188 -0.5628 2.3205 28 6 5.5042 0.1980 1.1842 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.9932 -0.4023 -1.3337 35 1 5.6689 3.0526 -1.1346 36 1 6.6461 1.6240 -1.5496 37 1 4.2693 6.7132 -4.4800 38 1 8.2428 1.6291 -3.2775 39 1 8.0040 2.6859 -4.7699 40 1 8.1142 4.7626 -3.3174 41 1 8.3531 3.7059 -1.8248 42 1 3.9281 1.9806 2.5576 43 1 2.4352 1.0090 2.5227 44 1 3.5962 -0.8589 3.6326 45 1 3.7683 0.6220 4.6071 46 1 5.9313 -0.6070 4.3863 47 1 6.0079 1.0134 3.6535 48 1 5.9481 1.1925 1.2311 49 1 5.8299 -0.3030 0.2728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885751744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:07 Heat of formation + Delta-G solvation = -144.738163 kcal Electronic energy + Delta-G solvation = -31321.480170 eV Core-core repulsion = 27183.675178 eV Total energy + Delta-G solvation = -4137.804992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.93602 -38.04590 -37.13861 -36.24016 -35.74446 -34.99929 -33.40749 -32.20499 -30.97914 -28.80555 -28.53524 -26.17567 -25.56742 -25.27095 -23.79144 -21.74946 -21.60196 -20.40619 -19.54700 -18.61061 -17.25002 -16.83175 -16.58769 -16.24234 -16.17533 -15.78648 -15.52265 -15.30621 -15.13719 -14.97268 -14.77327 -14.25532 -14.09949 -13.88615 -13.23931 -13.03928 -12.95544 -12.83970 -12.67858 -12.52655 -12.49888 -11.99754 -11.65145 -11.38175 -11.32723 -11.32018 -11.15462 -11.09904 -11.08427 -10.85265 -10.68620 -10.61657 -10.48406 -10.37120 -10.12067 -9.79792 -9.67478 -9.61616 -9.26028 -9.11140 -8.68659 -8.50256 -6.22004 -4.33014 1.01533 3.19090 3.27230 3.29979 3.41405 3.68558 3.77253 4.30791 4.42911 4.49179 4.56753 4.63968 4.68419 4.73896 4.90359 4.98157 5.04960 5.10443 5.13076 5.15756 5.19835 5.27966 5.32141 5.39614 5.44155 5.46823 5.53174 5.60201 5.62591 5.67782 5.74517 5.79142 5.86576 5.92295 5.97806 6.03988 6.09024 6.15754 6.28851 6.39807 6.58931 6.80553 7.01550 7.04915 7.12691 7.27171 7.56311 8.30902 8.81929 9.39995 10.89519 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.004514 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.198217 B = 6200.793378 C = 6978.541604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.040 3.960 4 C 0.166 3.834 5 H 0.095 0.905 6 N -1.127 6.127 7 S 2.626 3.374 8 O -0.964 6.964 9 O -0.935 6.935 10 C -0.587 4.587 11 C 0.009 3.991 12 C -0.534 4.534 13 H 0.087 0.913 14 C 0.101 3.899 15 N -0.873 5.873 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.259 1.259 20 C -0.173 4.173 21 C -0.188 4.188 22 C -0.124 4.124 23 H 0.099 0.901 24 C -0.119 4.119 25 C -0.153 4.153 26 C 0.057 3.943 27 O -0.380 6.380 28 C 0.060 3.940 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.269 0.731 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 -9.986 17.945 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.038 4.038 4 C 0.058 3.942 5 H 0.113 0.887 6 N -0.882 5.882 7 S 2.720 3.280 8 O -0.955 6.955 9 O -0.924 6.924 10 C -0.718 4.718 11 C 0.007 3.993 12 C -0.572 4.572 13 H 0.105 0.895 14 C -0.106 4.106 15 N -0.507 5.507 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.227 4.227 22 C -0.144 4.144 23 H 0.117 0.883 24 C -0.157 4.157 25 C -0.191 4.191 26 C -0.020 4.020 27 O -0.299 6.299 28 C -0.016 4.016 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.578 -9.894 17.044 19.876 hybrid contribution 0.352 0.927 1.376 1.696 sum -2.226 -8.967 18.420 20.608 Atomic orbital electron populations 1.22724 0.81443 1.02416 1.00010 1.87834 1.19253 1.27579 1.95453 1.23188 0.93581 0.85278 1.01787 1.20708 0.92778 0.96615 0.84103 0.88699 1.56186 1.82597 1.20208 1.29248 1.04683 0.76730 0.73826 0.72717 1.93510 1.85931 1.62336 1.53688 1.93564 1.50930 1.64415 1.83527 1.30362 1.20323 1.11417 1.09662 1.18731 0.87978 0.98936 0.93667 1.20409 1.26817 0.98027 1.11903 0.89485 1.24926 0.93187 0.96749 0.95717 1.69885 1.35031 1.11079 1.34659 0.86903 0.78256 0.79775 0.84625 1.20156 1.21563 1.18304 1.22964 1.03207 0.95501 0.99300 1.22941 1.02898 0.97341 0.99501 1.22017 0.96867 1.01611 0.93890 0.88307 1.21678 1.01615 0.98958 0.93473 1.22159 0.96826 1.01354 0.98718 1.22594 0.94293 0.98542 0.86549 1.87950 1.78945 1.49190 1.13784 1.22723 0.93162 0.96500 0.89262 0.94426 0.93856 0.89888 0.92553 0.90727 0.75203 0.86309 0.87359 0.92146 0.90508 0.88772 0.89014 0.90682 0.91598 0.90816 0.90932 0.90946 0.89096 0.93229 0.92944 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.81 9.77 -35.23 -0.34 -5.15 16 3 C 0.04 0.51 5.28 37.16 0.20 0.71 16 4 C 0.17 2.10 2.06 -67.93 -0.14 1.96 16 5 H 0.10 1.14 7.32 -51.93 -0.38 0.76 16 6 N -1.13 -16.34 4.59 -4.89 -0.02 -16.36 16 7 S 2.63 52.55 4.52 -107.50 -0.49 52.06 16 8 O -0.96 -21.97 18.08 -57.54 -1.04 -23.01 16 9 O -0.93 -22.24 16.27 -57.54 -0.94 -23.18 16 10 C -0.59 -11.06 5.87 37.16 0.22 -10.84 16 11 C 0.01 0.21 1.12 -155.66 -0.17 0.04 16 12 C -0.53 -14.80 7.55 -34.44 -0.26 -15.06 16 13 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 14 C 0.10 2.86 5.46 -17.82 -0.10 2.76 16 15 N -0.87 -26.31 13.96 55.43 0.77 -25.54 16 16 Si 0.88 20.90 24.98 -169.99 -4.25 16.65 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.26 -5.56 5.46 56.52 0.31 -5.25 16 20 C -0.17 -3.49 9.88 -26.74 -0.26 -3.75 16 21 C -0.19 -3.85 7.54 -26.74 -0.20 -4.06 16 22 C -0.12 -1.30 1.88 -90.48 -0.17 -1.47 16 23 H 0.10 1.11 7.56 -51.93 -0.39 0.72 16 24 C -0.12 -1.06 4.87 -26.55 -0.13 -1.19 16 25 C -0.15 -1.21 6.14 -26.59 -0.16 -1.37 16 26 C 0.06 0.50 6.84 37.20 0.25 0.75 16 27 O -0.38 -4.39 10.77 -35.23 -0.38 -4.76 16 28 C 0.06 0.66 5.93 37.21 0.22 0.88 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.59 6.79 -51.93 -0.35 0.23 16 33 H 0.07 1.14 7.37 -51.93 -0.38 0.75 16 34 H 0.41 5.33 8.80 -34.46 -0.30 5.03 16 35 H 0.12 2.09 6.09 -51.93 -0.32 1.77 16 36 H 0.11 1.62 7.95 -51.93 -0.41 1.21 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.08 1.33 8.08 -51.92 -0.42 0.91 16 39 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 40 H 0.09 1.97 7.01 -51.93 -0.36 1.61 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.63 6.75 -51.93 -0.35 0.28 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.10 1.06 7.69 -51.93 -0.40 0.66 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -34.89 391.38 -8.75 -43.65 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -8.38 Total: 8.96 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 0.40 Total: -29.21 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.75 Total: -41.90 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -2.70 Total: -56.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.25 Total: 16.65 kcal Atomic # 16 Polarization: 52.55 SS G_CDS: -0.49 Total: 52.06 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.89 -8.75 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885751744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.090 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds