Wall clock time and date at job start Wed Apr 1 2020 04:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99896 * 2 1 4 4 C 1.53005 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47072 * 185.00116 * 4 3 2 6 6 N 1.46507 * 109.46916 * 65.00377 * 4 3 2 7 7 S 1.65593 * 120.00100 * 94.99937 * 6 4 3 8 8 O 1.42097 * 104.27827 * 181.06895 * 7 6 4 9 9 O 1.42105 * 104.27835 * 308.92741 * 7 6 4 10 10 C 1.81402 * 104.45051 * 64.99801 * 7 6 4 11 11 C 1.53001 * 109.47108 * 172.63493 * 10 7 6 12 12 C 1.50700 * 115.55017 * 39.95075 * 11 10 7 13 13 H 1.07999 * 119.99940 * 272.10866 * 12 11 10 14 14 C 1.37876 * 120.00101 * 92.11226 * 12 11 10 15 15 N 1.31516 * 119.99954 * 174.02924 * 14 12 11 16 16 Si 1.86806 * 119.99912 * 354.02292 * 14 12 11 17 17 H 1.48497 * 109.46723 * 93.58003 * 16 14 12 18 18 H 1.48494 * 109.47084 * 213.57908 * 16 14 12 19 19 H 1.48500 * 109.47060 * 333.58114 * 16 14 12 20 20 C 1.52995 * 117.49992 * 254.24058 * 11 10 7 21 21 C 1.52989 * 60.00220 * 252.51342 * 20 11 10 22 22 C 1.52992 * 109.47173 * 305.00291 * 4 3 2 23 23 H 1.08998 * 109.52851 * 59.87636 * 22 4 3 24 24 C 1.53181 * 109.57588 * 299.71278 * 22 4 3 25 25 C 1.53174 * 109.04760 * 183.09009 * 24 22 4 26 26 C 1.53091 * 109.16282 * 56.96564 * 25 24 22 27 27 O 1.42908 * 109.42291 * 302.40678 * 26 25 24 28 28 C 1.42897 * 114.09783 * 61.15428 * 27 26 25 29 29 H 1.08998 * 109.46588 * 299.99799 * 1 2 3 30 30 H 1.09000 * 109.46837 * 59.99931 * 1 2 3 31 31 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46969 * 60.00578 * 3 2 1 33 33 H 1.08997 * 109.47588 * 299.99859 * 3 2 1 34 34 H 0.96995 * 119.99852 * 274.99503 * 6 4 3 35 35 H 1.08996 * 109.47034 * 292.63158 * 10 7 6 36 36 H 1.08997 * 109.47241 * 52.63203 * 10 7 6 37 37 H 0.97003 * 119.99825 * 179.97438 * 15 14 12 38 38 H 1.09007 * 117.49842 * 0.02562 * 20 11 10 39 39 H 1.08996 * 117.50178 * 145.01596 * 20 11 10 40 40 H 1.09007 * 117.50028 * 252.51122 * 21 20 11 41 41 H 1.08996 * 117.50531 * 107.49237 * 21 20 11 42 42 H 1.08999 * 109.54397 * 302.95267 * 24 22 4 43 43 H 1.09006 * 109.54077 * 63.22034 * 24 22 4 44 44 H 1.09002 * 109.51611 * 297.06695 * 25 24 22 45 45 H 1.08997 * 109.53488 * 176.87654 * 25 24 22 46 46 H 1.09005 * 109.47979 * 182.42411 * 26 25 24 47 47 H 1.08993 * 109.47894 * 62.39631 * 26 25 24 48 48 H 1.09005 * 109.48078 * 58.81811 * 28 27 26 49 49 H 1.08992 * 109.48228 * 178.85657 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 7 3.9767 0.5640 -1.2510 7 16 4.4474 1.5121 -2.5244 8 8 4.7756 0.5845 -3.5495 9 8 3.3800 2.4361 -2.6868 10 6 5.9378 2.3593 -1.9314 11 6 6.5782 3.1328 -3.0858 12 6 5.6168 3.8321 -4.0120 13 1 5.2050 3.3060 -4.8605 14 6 5.2630 5.1437 -3.7761 15 7 4.5185 5.7905 -4.6461 16 14 5.8410 6.0018 -2.2208 17 1 7.1038 6.7321 -2.4986 18 1 4.8023 6.9626 -1.7704 19 1 6.0765 4.9927 -1.1570 20 6 7.8575 2.5583 -3.6973 21 6 7.9239 3.8108 -2.8212 22 6 3.9781 0.3198 1.1825 23 1 3.5338 -0.6717 1.0950 24 6 3.5241 0.9703 2.4929 25 6 4.0395 0.1363 3.6698 26 6 5.5631 0.0214 3.5753 27 8 5.9188 -0.5628 2.3205 28 6 5.5042 0.1980 1.1842 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.9932 -0.4023 -1.3337 35 1 5.6689 3.0526 -1.1346 36 1 6.6461 1.6240 -1.5496 37 1 4.2693 6.7132 -4.4800 38 1 8.2428 1.6291 -3.2775 39 1 8.0040 2.6859 -4.7699 40 1 8.1142 4.7626 -3.3174 41 1 8.3531 3.7059 -1.8248 42 1 3.9281 1.9806 2.5576 43 1 2.4352 1.0090 2.5227 44 1 3.5962 -0.8589 3.6326 45 1 3.7683 0.6220 4.6071 46 1 5.9313 -0.6070 4.3863 47 1 6.0079 1.0134 3.6535 48 1 5.9481 1.1925 1.2311 49 1 5.8299 -0.3030 0.2728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885751744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:06 Heat of formation + Delta-G solvation = -173.162483 kcal Electronic energy + Delta-G solvation = -31322.712741 eV Core-core repulsion = 27183.675178 eV Total energy + Delta-G solvation = -4139.037563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.73465 -38.94403 -38.82472 -37.90127 -36.80422 -36.63780 -34.32006 -34.18148 -31.82432 -30.14768 -29.68965 -27.62166 -27.02161 -25.97303 -24.60165 -23.34381 -22.46324 -21.54573 -20.95536 -20.14664 -18.71821 -18.35525 -17.75105 -17.22872 -17.19063 -16.98225 -16.72887 -16.66306 -16.42462 -16.06886 -15.75054 -15.50728 -15.42926 -14.83965 -14.79391 -14.54980 -14.25443 -14.03939 -13.76256 -13.69036 -13.29986 -13.16169 -13.06353 -12.89736 -12.87535 -12.62912 -12.52133 -12.29523 -12.25944 -12.04200 -12.01182 -11.86403 -11.84783 -11.67259 -11.50572 -11.19237 -10.92467 -10.73142 -10.58835 -10.56624 -10.28928 -10.09938 -8.34865 -6.51175 -0.53190 1.33271 1.35872 1.48253 2.06284 2.34360 2.84553 2.93103 2.98787 3.03471 3.16452 3.47067 3.57448 3.78728 3.82560 3.89130 4.06911 4.10972 4.20686 4.22236 4.32203 4.36281 4.37176 4.44973 4.46493 4.53551 4.57972 4.61123 4.61852 4.74293 4.82395 4.84131 4.86597 4.86913 4.88829 4.98140 5.00664 5.14142 5.18003 5.23245 5.31994 5.47892 5.48886 5.62655 6.13840 6.15737 6.22027 6.32938 6.62727 7.25764 8.81863 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.004514 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.198217 B = 6200.793378 C = 6978.541604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.037 3.963 4 C 0.158 3.842 5 H 0.106 0.894 6 N -1.109 6.109 7 S 2.623 3.377 8 O -1.006 7.006 9 O -0.987 6.987 10 C -0.574 4.574 11 C -0.029 4.029 12 C -0.536 4.536 13 H 0.025 0.975 14 C 0.037 3.963 15 N -0.935 5.935 16 Si 0.931 3.069 17 H -0.261 1.261 18 H -0.294 1.294 19 H -0.210 1.210 20 C -0.169 4.169 21 C -0.171 4.171 22 C -0.111 4.111 23 H 0.089 0.911 24 C -0.121 4.121 25 C -0.148 4.148 26 C 0.049 3.951 27 O -0.399 6.399 28 C 0.055 3.945 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.423 0.577 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.269 0.731 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -10.516 22.625 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C -0.041 4.041 4 C 0.050 3.950 5 H 0.123 0.877 6 N -0.868 5.868 7 S 2.721 3.279 8 O -0.996 6.996 9 O -0.976 6.976 10 C -0.707 4.707 11 C -0.031 4.031 12 C -0.573 4.573 13 H 0.043 0.957 14 C -0.164 4.164 15 N -0.572 5.572 16 Si 0.753 3.247 17 H -0.186 1.186 18 H -0.221 1.221 19 H -0.132 1.132 20 C -0.206 4.206 21 C -0.209 4.209 22 C -0.132 4.132 23 H 0.107 0.893 24 C -0.159 4.159 25 C -0.185 4.185 26 C -0.027 4.027 27 O -0.319 6.319 28 C -0.022 4.022 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.258 0.742 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.138 0.862 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.121 0.879 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.527 -10.475 21.716 24.116 hybrid contribution -0.342 0.988 -0.161 1.058 sum -0.869 -9.487 21.555 23.566 Atomic orbital electron populations 1.22909 0.80257 1.03685 1.00406 1.87811 1.20633 1.27440 1.95517 1.23183 0.93952 0.85463 1.01503 1.21032 0.92747 0.97560 0.83633 0.87654 1.55630 1.82277 1.20072 1.28823 1.04328 0.77008 0.73388 0.73187 1.93445 1.86459 1.63268 1.56421 1.93508 1.53358 1.65961 1.84807 1.30158 1.19676 1.12389 1.08437 1.18685 0.88175 1.01243 0.95013 1.20498 1.27534 0.98130 1.11145 0.95664 1.25972 0.93222 0.97640 0.99532 1.70062 1.37821 1.11669 1.37608 0.86028 0.78007 0.79499 0.81137 1.18635 1.22124 1.13234 1.23078 1.01155 0.97500 0.98870 1.23044 0.99864 0.96535 1.01455 1.21890 0.96936 1.00722 0.93630 0.89258 1.21726 1.01963 0.99500 0.92685 1.22127 0.96217 1.01041 0.99147 1.22809 0.94875 0.99230 0.85785 1.87929 1.79222 1.49977 1.14725 1.22787 0.93053 0.97034 0.89336 0.92431 0.95061 0.88261 0.89801 0.94070 0.74165 0.84134 0.82325 0.92190 0.86641 0.90644 0.90517 0.86223 0.90544 0.90469 0.91591 0.88996 0.87888 0.92336 0.91813 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.39 -9.56 9.77 -148.98 -1.46 -11.02 16 3 C 0.04 0.92 5.28 71.98 0.38 1.30 16 4 C 0.16 3.65 2.06 44.99 0.09 3.74 16 5 H 0.11 2.21 7.32 -2.39 -0.02 2.19 16 6 N -1.11 -30.98 4.59 -169.38 -0.78 -31.75 16 7 S 2.62 105.25 4.52 -56.49 -0.26 104.99 16 8 O -1.01 -47.15 18.08 -127.65 -2.31 -49.46 16 9 O -0.99 -48.99 16.27 -127.65 -2.08 -51.07 16 10 C -0.57 -19.61 5.87 71.98 0.42 -19.19 16 11 C -0.03 -1.25 1.12 -52.93 -0.06 -1.31 16 12 C -0.54 -30.68 7.55 25.60 0.19 -30.48 16 13 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 14 C 0.04 2.15 5.46 84.65 0.46 2.61 16 15 N -0.93 -59.49 13.96 21.45 0.30 -59.19 16 16 Si 0.93 41.62 24.98 68.60 1.71 43.33 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.21 -7.67 5.46 99.48 0.54 -7.13 16 20 C -0.17 -6.39 9.88 30.59 0.30 -6.08 16 21 C -0.17 -6.25 7.54 30.59 0.23 -6.02 16 22 C -0.11 -2.02 1.88 -10.70 -0.02 -2.04 16 23 H 0.09 1.81 7.56 -2.39 -0.02 1.79 16 24 C -0.12 -1.70 4.87 30.71 0.15 -1.55 16 25 C -0.15 -1.79 6.14 30.68 0.19 -1.60 16 26 C 0.05 0.68 6.84 72.01 0.49 1.17 16 27 O -0.40 -7.90 10.77 -148.98 -1.60 -9.50 16 28 C 0.05 1.00 5.93 72.01 0.43 1.42 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.57 6.79 -2.39 -0.02 1.55 16 33 H 0.04 1.29 7.37 -2.39 -0.02 1.27 16 34 H 0.42 10.53 8.80 -96.76 -0.85 9.68 16 35 H 0.14 4.19 6.09 -2.39 -0.01 4.18 16 36 H 0.16 3.82 7.95 -2.39 -0.02 3.80 16 37 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.12 3.46 8.08 -2.38 -0.02 3.44 16 39 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.08 3.05 7.01 -2.38 -0.02 3.04 16 41 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 1.04 6.75 -2.38 -0.02 1.02 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.10 1.75 7.69 -2.39 -0.02 1.73 16 Total: -1.00 -82.81 391.38 -2.03 -84.84 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.08 Total: 35.16 kcal Atomic # 6 Polarization: -60.84 SS G_CDS: 4.51 Total: -56.33 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -0.48 Total: -90.95 kcal Atomic # 8 Polarization: -113.61 SS G_CDS: -7.44 Total: -121.05 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.71 Total: 43.33 kcal Atomic # 16 Polarization: 105.25 SS G_CDS: -0.26 Total: 104.99 kcal Total: -82.81 -2.03 -84.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885751744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.326 kcal (2) G-P(sol) polarization free energy of solvation -82.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds