Wall clock time and date at job start Wed Apr 1 2020 04:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99519 * 2 1 4 4 C 1.53008 * 109.46705 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.58300 * 48.22147 * 4 3 2 6 6 C 1.53185 * 109.58555 * 168.50344 * 4 3 2 7 7 C 1.53040 * 109.31447 * 174.56590 * 6 4 3 8 8 C 1.53047 * 109.53765 * 298.63543 * 7 6 4 9 9 C 1.53192 * 109.30827 * 61.36567 * 8 7 6 10 10 N 1.46922 * 109.58701 * 287.93943 * 4 3 2 11 11 C 1.34775 * 120.63223 * 6.46474 * 10 4 3 12 12 O 1.21362 * 120.00053 * 6.74681 * 11 10 4 13 13 C 1.49369 * 120.00237 * 186.74528 * 11 10 4 14 14 O 1.21358 * 119.99706 * 6.57748 * 13 11 10 15 15 N 1.34773 * 120.00285 * 186.57061 * 13 11 10 16 16 C 1.39118 * 120.00180 * 174.99918 * 15 13 11 17 17 C 1.39706 * 119.57781 * 185.28120 * 16 15 13 18 18 C 1.38649 * 119.49167 * 179.72865 * 17 16 15 19 19 C 1.38353 * 118.66902 * 0.53667 * 18 17 16 20 20 C 1.40587 * 119.13464 * 359.72264 * 19 18 17 21 21 C 1.41339 * 119.78286 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00170 * 5.39866 * 21 20 19 23 23 C 1.40035 * 120.00059 * 185.39576 * 21 20 19 24 24 N 1.30743 * 119.99667 * 5.27302 * 23 21 20 25 25 Si 1.86797 * 119.99862 * 185.26934 * 23 21 20 26 26 H 1.48497 * 109.46899 * 95.00528 * 25 23 21 27 27 H 1.48499 * 109.46941 * 214.99766 * 25 23 21 28 28 H 1.48496 * 109.47421 * 335.00220 * 25 23 21 29 29 N 1.31929 * 119.57384 * 5.55108 * 16 15 13 30 30 H 1.09000 * 109.47289 * 60.00103 * 1 2 3 31 31 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47402 * 299.99992 * 1 2 3 33 33 H 1.08999 * 109.47006 * 60.00350 * 3 2 1 34 34 H 1.09002 * 109.47246 * 299.99696 * 3 2 1 35 35 H 1.09000 * 109.49940 * 294.51700 * 6 4 3 36 36 H 1.09003 * 109.50168 * 54.61501 * 6 4 3 37 37 H 1.08997 * 109.46165 * 58.65303 * 7 6 4 38 38 H 1.08996 * 109.46226 * 178.61571 * 7 6 4 39 39 H 1.08995 * 109.49588 * 181.30971 * 8 7 6 40 40 H 1.08995 * 109.49478 * 301.41367 * 8 7 6 41 41 H 1.08998 * 109.59158 * 65.15042 * 9 8 7 42 42 H 1.09001 * 109.58456 * 185.43936 * 9 8 7 43 43 H 0.97000 * 120.00068 * 355.00270 * 15 13 11 44 44 H 1.08003 * 120.25132 * 359.97438 * 17 16 15 45 45 H 1.08001 * 120.66792 * 180.23717 * 18 17 16 46 46 H 1.08000 * 120.42619 * 179.75617 * 19 18 17 47 47 H 0.96998 * 119.99435 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.8459 0.4737 -0.7649 6 6 4.1591 2.5540 -0.2870 7 6 5.6803 2.4559 -0.1513 8 6 6.0415 2.0517 1.2799 9 6 5.4392 0.6766 1.5852 10 7 3.9923 0.7211 1.3178 11 6 3.1042 0.3477 2.2603 12 8 1.9239 0.2752 1.9873 13 6 3.5726 0.0231 3.6411 14 8 4.7318 0.2094 3.9480 15 7 2.7078 -0.4766 4.5460 16 6 3.1645 -0.8762 5.7978 17 6 2.2834 -1.4946 6.6883 18 6 2.7419 -1.8973 7.9333 19 6 4.0652 -1.6620 8.2612 20 6 4.9009 -1.0302 7.3235 21 6 6.2549 -0.7827 7.6444 22 1 6.6673 -1.1553 8.5704 23 6 7.0618 -0.0543 6.7616 24 7 6.5388 0.4846 5.6914 25 14 8.8852 0.1475 7.1133 26 1 9.6482 -0.8991 6.3867 27 1 9.3312 1.4894 6.6600 28 1 9.1259 0.0124 8.5723 29 7 4.4229 -0.6615 6.1308 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9035 2.8647 -1.3001 36 1 3.7767 3.2850 0.4255 37 1 6.0594 1.7071 -0.8467 38 1 6.1284 3.4230 -0.3795 39 1 7.1257 2.0047 1.3820 40 1 5.6414 2.7873 1.9776 41 1 5.9049 -0.0758 0.9489 42 1 5.6109 0.4268 2.6322 43 1 1.7669 -0.5576 4.3245 44 1 1.2539 -1.6613 6.4075 45 1 2.0781 -2.3805 8.6349 46 1 4.4513 -1.9603 9.2247 47 1 7.0977 0.9895 5.0801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890317240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:49 Heat of formation + Delta-G solvation = -20.102967 kcal Electronic energy + Delta-G solvation = -32237.013247 eV Core-core repulsion = 28001.461642 eV Total energy + Delta-G solvation = -4235.551605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.76683 -39.09275 -37.65321 -37.24955 -36.79473 -34.42529 -33.20172 -32.50092 -31.96439 -30.39530 -29.23446 -27.52841 -26.12314 -25.62716 -24.53531 -23.84994 -22.35831 -21.50393 -21.02149 -20.17019 -19.12151 -17.84619 -16.87206 -16.50429 -16.28411 -16.09458 -15.87116 -15.08933 -14.96806 -14.72485 -14.54591 -14.50264 -14.21304 -14.01417 -13.71322 -13.65976 -13.35059 -12.99339 -12.87960 -12.64273 -12.30990 -12.06070 -11.93654 -11.90020 -11.41572 -11.22257 -11.07796 -11.01753 -10.97456 -10.89203 -10.69974 -10.63430 -10.52505 -10.03526 -9.90496 -9.72880 -9.32085 -9.09991 -8.48388 -8.32713 -8.05400 -7.27996 -7.06919 -6.27973 -4.45260 1.98350 2.76347 2.82757 3.08649 3.13352 3.15974 3.23030 3.85137 3.96426 4.01046 4.03123 4.65268 4.84088 4.85223 4.92007 4.96691 5.18372 5.22570 5.24211 5.33120 5.49177 5.55750 5.61746 5.70922 5.76222 5.86000 5.87088 5.91782 5.95825 5.98628 6.05546 6.09241 6.31434 6.41126 6.47326 6.59457 6.65730 6.78638 6.83059 7.20148 7.40589 7.43876 7.50401 7.53736 7.75314 7.88800 8.07272 8.25147 8.39333 8.64707 8.92528 9.01289 10.12486 10.38996 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.004224 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.722251 B = 6627.874642 C = 8964.620179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.365 6.365 3 C 0.075 3.925 4 C 0.145 3.855 5 H 0.079 0.921 6 C -0.126 4.126 7 C -0.120 4.120 8 C -0.128 4.128 9 C 0.048 3.952 10 N -0.580 5.580 11 C 0.502 3.498 12 O -0.503 6.503 13 C 0.473 3.527 14 O -0.385 6.385 15 N -0.635 5.635 16 C 0.367 3.633 17 C -0.347 4.347 18 C -0.036 4.036 19 C -0.300 4.300 20 C 0.273 3.727 21 C -0.425 4.425 22 H 0.083 0.917 23 C 0.063 3.937 24 N -0.667 5.667 25 Si 0.898 3.102 26 H -0.271 1.271 27 H -0.278 1.278 28 H -0.263 1.263 29 N -0.474 5.474 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.168 0.832 43 H 0.412 0.588 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 4.419 -12.991 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.283 6.283 3 C -0.001 4.001 4 C 0.042 3.958 5 H 0.097 0.903 6 C -0.164 4.164 7 C -0.157 4.157 8 C -0.167 4.167 9 C -0.073 4.073 10 N -0.315 5.315 11 C 0.285 3.715 12 O -0.378 6.378 13 C 0.252 3.748 14 O -0.251 6.251 15 N -0.283 5.283 16 C 0.129 3.871 17 C -0.373 4.373 18 C -0.060 4.060 19 C -0.324 4.324 20 C 0.148 3.852 21 C -0.456 4.456 22 H 0.101 0.899 23 C -0.165 4.165 24 N -0.286 5.286 25 Si 0.722 3.278 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.187 1.187 29 N -0.193 5.193 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.184 0.816 43 H 0.247 0.753 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.193 4.911 -13.738 14.935 hybrid contribution -0.501 -0.105 0.386 0.641 sum -3.694 4.806 -13.352 14.664 Atomic orbital electron populations 1.22470 0.81939 1.01764 0.98842 1.87928 1.18913 1.26652 1.94800 1.22427 0.91611 0.86622 0.99483 1.21249 0.93349 0.95856 0.85370 0.90343 1.21874 0.96460 0.96069 1.01996 1.21547 0.94836 1.01530 0.97827 1.21832 1.00999 0.97856 0.95987 1.23398 0.77510 0.96551 1.09824 1.47913 1.07577 1.63835 1.12187 1.20492 0.86243 0.78489 0.86227 1.90751 1.16675 1.50430 1.79992 1.20328 0.87473 0.81253 0.85747 1.90682 1.14714 1.44009 1.75693 1.43019 1.11648 1.61232 1.12356 1.18544 0.92144 0.92703 0.83703 1.20511 0.99019 1.19667 0.98130 1.20585 0.95025 0.95924 0.94478 1.21660 0.94898 1.14357 1.01444 1.18344 0.93118 0.87717 0.85975 1.19584 0.93294 1.28348 1.04366 0.89869 1.26100 1.00091 0.95437 0.94880 1.70240 1.35562 1.16965 1.05802 0.86472 0.83239 0.78228 0.79844 1.19639 1.20282 1.18747 1.68591 1.08967 1.23055 1.18689 0.95694 0.90597 0.94030 0.91835 0.94389 0.90793 0.91261 0.91911 0.91765 0.90748 0.91401 0.92574 0.81594 0.75264 0.88775 0.88403 0.88396 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.50 101.05 1.06 1.63 16 2 O -0.36 -5.51 8.20 -60.65 -0.50 -6.01 16 3 C 0.08 0.99 4.53 37.16 0.17 1.16 16 4 C 0.15 1.84 3.15 -67.60 -0.21 1.63 16 5 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 6 C -0.13 -1.28 5.35 -26.61 -0.14 -1.42 16 7 C -0.12 -1.20 5.88 -26.69 -0.16 -1.36 16 8 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 9 C 0.05 0.71 6.27 -3.56 -0.02 0.69 16 10 N -0.58 -8.89 2.98 -165.53 -0.49 -9.39 16 11 C 0.50 8.87 7.48 -11.62 -0.09 8.79 16 12 O -0.50 -8.87 10.01 -19.93 -0.20 -9.07 16 13 C 0.47 9.69 7.74 -11.62 -0.09 9.60 16 14 O -0.39 -8.78 9.07 5.49 0.05 -8.73 16 15 N -0.64 -13.05 5.37 -11.83 -0.06 -13.12 16 16 C 0.37 8.83 7.42 -155.09 -1.15 7.68 16 17 C -0.35 -7.75 9.95 -38.88 -0.39 -8.13 16 18 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 19 C -0.30 -7.36 9.83 -38.65 -0.38 -7.74 16 20 C 0.27 7.41 6.53 -85.00 -0.56 6.85 16 21 C -0.43 -11.22 9.13 -37.73 -0.34 -11.57 16 22 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 23 C 0.06 1.58 5.48 -17.34 -0.10 1.49 16 24 N -0.67 -17.08 9.25 55.55 0.51 -16.57 16 25 Si 0.90 18.34 29.56 -169.99 -5.03 13.32 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 29 N -0.47 -12.76 5.74 -10.28 -0.06 -12.82 16 30 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.52 7.88 -51.93 -0.41 0.11 16 33 H 0.06 0.93 6.49 -51.93 -0.34 0.59 16 34 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.17 3.09 3.81 -56.62 -0.22 2.87 16 43 H 0.41 7.31 8.18 -40.82 -0.33 6.97 16 44 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 45 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 47 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -29.93 373.20 -9.87 -39.80 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.76 Total: 10.62 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.96 Total: 6.34 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.10 Total: -51.89 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.65 Total: -23.81 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.93 -9.87 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890317240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.700 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds