Wall clock time and date at job start Wed Apr 1 2020 04:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99519 * 2 1 4 4 C 1.53008 * 109.46705 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.58300 * 48.22147 * 4 3 2 6 6 C 1.53185 * 109.58555 * 168.50344 * 4 3 2 7 7 C 1.53040 * 109.31447 * 174.56590 * 6 4 3 8 8 C 1.53047 * 109.53765 * 298.63543 * 7 6 4 9 9 C 1.53192 * 109.30827 * 61.36567 * 8 7 6 10 10 N 1.46922 * 109.58701 * 287.93943 * 4 3 2 11 11 C 1.34775 * 120.63223 * 6.46474 * 10 4 3 12 12 O 1.21362 * 120.00053 * 6.74681 * 11 10 4 13 13 C 1.49369 * 120.00237 * 186.74528 * 11 10 4 14 14 O 1.21358 * 119.99706 * 6.57748 * 13 11 10 15 15 N 1.34773 * 120.00285 * 186.57061 * 13 11 10 16 16 C 1.39118 * 120.00180 * 174.99918 * 15 13 11 17 17 C 1.39706 * 119.57781 * 185.28120 * 16 15 13 18 18 C 1.38649 * 119.49167 * 179.72865 * 17 16 15 19 19 C 1.38353 * 118.66902 * 0.53667 * 18 17 16 20 20 C 1.40587 * 119.13464 * 359.72264 * 19 18 17 21 21 C 1.41339 * 119.78286 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00170 * 5.39866 * 21 20 19 23 23 C 1.40035 * 120.00059 * 185.39576 * 21 20 19 24 24 N 1.30743 * 119.99667 * 5.27302 * 23 21 20 25 25 Si 1.86797 * 119.99862 * 185.26934 * 23 21 20 26 26 H 1.48497 * 109.46899 * 95.00528 * 25 23 21 27 27 H 1.48499 * 109.46941 * 214.99766 * 25 23 21 28 28 H 1.48496 * 109.47421 * 335.00220 * 25 23 21 29 29 N 1.31929 * 119.57384 * 5.55108 * 16 15 13 30 30 H 1.09000 * 109.47289 * 60.00103 * 1 2 3 31 31 H 1.08999 * 109.47298 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47402 * 299.99992 * 1 2 3 33 33 H 1.08999 * 109.47006 * 60.00350 * 3 2 1 34 34 H 1.09002 * 109.47246 * 299.99696 * 3 2 1 35 35 H 1.09000 * 109.49940 * 294.51700 * 6 4 3 36 36 H 1.09003 * 109.50168 * 54.61501 * 6 4 3 37 37 H 1.08997 * 109.46165 * 58.65303 * 7 6 4 38 38 H 1.08996 * 109.46226 * 178.61571 * 7 6 4 39 39 H 1.08995 * 109.49588 * 181.30971 * 8 7 6 40 40 H 1.08995 * 109.49478 * 301.41367 * 8 7 6 41 41 H 1.08998 * 109.59158 * 65.15042 * 9 8 7 42 42 H 1.09001 * 109.58456 * 185.43936 * 9 8 7 43 43 H 0.97000 * 120.00068 * 355.00270 * 15 13 11 44 44 H 1.08003 * 120.25132 * 359.97438 * 17 16 15 45 45 H 1.08001 * 120.66792 * 180.23717 * 18 17 16 46 46 H 1.08000 * 120.42619 * 179.75617 * 19 18 17 47 47 H 0.96998 * 119.99435 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.8459 0.4737 -0.7649 6 6 4.1591 2.5540 -0.2870 7 6 5.6803 2.4559 -0.1513 8 6 6.0415 2.0517 1.2799 9 6 5.4392 0.6766 1.5852 10 7 3.9923 0.7211 1.3178 11 6 3.1042 0.3477 2.2603 12 8 1.9239 0.2752 1.9873 13 6 3.5726 0.0231 3.6411 14 8 4.7318 0.2094 3.9480 15 7 2.7078 -0.4766 4.5460 16 6 3.1645 -0.8762 5.7978 17 6 2.2834 -1.4946 6.6883 18 6 2.7419 -1.8973 7.9333 19 6 4.0652 -1.6620 8.2612 20 6 4.9009 -1.0302 7.3235 21 6 6.2549 -0.7827 7.6444 22 1 6.6673 -1.1553 8.5704 23 6 7.0618 -0.0543 6.7616 24 7 6.5388 0.4846 5.6914 25 14 8.8852 0.1475 7.1133 26 1 9.6482 -0.8991 6.3867 27 1 9.3312 1.4894 6.6600 28 1 9.1259 0.0124 8.5723 29 7 4.4229 -0.6615 6.1308 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9035 2.8647 -1.3001 36 1 3.7767 3.2850 0.4255 37 1 6.0594 1.7071 -0.8467 38 1 6.1284 3.4230 -0.3795 39 1 7.1257 2.0047 1.3820 40 1 5.6414 2.7873 1.9776 41 1 5.9049 -0.0758 0.9489 42 1 5.6109 0.4268 2.6322 43 1 1.7669 -0.5576 4.3245 44 1 1.2539 -1.6613 6.4075 45 1 2.0781 -2.3805 8.6349 46 1 4.4513 -1.9603 9.2247 47 1 7.0977 0.9895 5.0801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890317240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:47 Heat of formation + Delta-G solvation = -36.997325 kcal Electronic energy + Delta-G solvation = -32237.745841 eV Core-core repulsion = 28001.461642 eV Total energy + Delta-G solvation = -4236.284199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.11897 -40.66048 -39.27390 -38.43918 -37.99991 -36.12513 -34.95791 -33.66641 -33.02014 -32.25558 -31.06054 -28.56717 -27.66380 -27.03944 -25.82329 -25.01985 -23.81794 -23.14687 -22.39648 -21.44925 -20.56245 -19.52530 -18.36795 -18.11022 -17.48993 -17.36238 -17.01876 -16.53679 -16.39453 -16.28912 -16.06004 -15.84560 -15.49843 -15.35031 -15.27354 -14.86261 -14.60329 -14.51603 -14.18755 -13.89148 -13.72500 -13.61812 -13.29668 -12.93804 -12.89003 -12.72884 -12.55853 -12.49456 -12.30990 -12.11467 -11.91726 -11.83204 -11.75221 -11.61445 -11.54926 -11.12165 -10.88944 -10.36287 -9.97811 -9.92575 -9.56611 -9.04975 -8.89898 -8.11398 -6.39906 0.43780 1.06409 1.29428 1.40772 1.44562 1.55469 1.57426 2.29322 2.43300 2.53210 2.93993 2.99310 3.42871 3.76856 3.94594 4.02731 4.03479 4.18121 4.25774 4.27608 4.33410 4.38574 4.49626 4.61241 4.65924 4.67145 4.80071 4.82586 4.88733 4.92248 4.92840 4.94986 4.95234 4.99895 5.09679 5.16146 5.22463 5.38353 5.44876 5.52463 5.65011 5.82677 5.90951 6.06601 6.20294 6.29804 6.45291 6.52976 6.77813 6.94814 7.05501 7.34668 8.25773 8.56455 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.004224 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.722251 B = 6627.874642 C = 8964.620179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.392 6.392 3 C 0.075 3.925 4 C 0.141 3.859 5 H 0.086 0.914 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.123 4.123 9 C 0.048 3.952 10 N -0.574 5.574 11 C 0.504 3.496 12 O -0.504 6.504 13 C 0.462 3.538 14 O -0.410 6.410 15 N -0.631 5.631 16 C 0.347 3.653 17 C -0.344 4.344 18 C -0.033 4.033 19 C -0.323 4.323 20 C 0.240 3.760 21 C -0.462 4.462 22 H 0.085 0.915 23 C 0.020 3.980 24 N -0.694 5.694 25 Si 0.974 3.026 26 H -0.269 1.269 27 H -0.269 1.269 28 H -0.259 1.259 29 N -0.503 5.503 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.133 0.867 43 H 0.423 0.577 44 H 0.127 0.873 45 H 0.138 0.862 46 H 0.107 0.893 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 5.043 -14.926 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.311 6.311 3 C -0.001 4.001 4 C 0.039 3.961 5 H 0.104 0.896 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.162 4.162 9 C -0.073 4.073 10 N -0.309 5.309 11 C 0.286 3.714 12 O -0.381 6.381 13 C 0.242 3.758 14 O -0.277 6.277 15 N -0.280 5.280 16 C 0.109 3.891 17 C -0.369 4.369 18 C -0.057 4.057 19 C -0.346 4.346 20 C 0.115 3.885 21 C -0.493 4.493 22 H 0.104 0.896 23 C -0.206 4.206 24 N -0.314 5.314 25 Si 0.795 3.205 26 H -0.194 1.194 27 H -0.194 1.194 28 H -0.183 1.183 29 N -0.222 5.222 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.261 0.739 44 H 0.145 0.855 45 H 0.155 0.845 46 H 0.125 0.875 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.439 5.543 -15.703 17.004 hybrid contribution -0.573 -0.339 0.948 1.158 sum -4.012 5.204 -14.755 16.152 Atomic orbital electron populations 1.22565 0.80755 1.02383 0.99470 1.87883 1.20379 1.27858 1.94946 1.22493 0.91647 0.86010 0.99966 1.21574 0.93510 0.97494 0.83569 0.89569 1.21885 0.96214 0.94025 1.03606 1.21528 0.94868 1.02909 0.95788 1.21778 1.01154 0.95604 0.97638 1.23213 0.77683 0.98548 1.07877 1.47981 1.07349 1.62779 1.12792 1.19966 0.86558 0.79390 0.85472 1.90759 1.16543 1.50954 1.79813 1.21019 0.87235 0.80599 0.86975 1.90737 1.15706 1.44632 1.76634 1.43031 1.12346 1.61122 1.11494 1.18994 0.92004 0.92906 0.85170 1.20936 1.00255 1.17976 0.97724 1.21025 0.94665 0.94926 0.95088 1.21851 0.95975 1.15131 1.01658 1.18823 0.94166 0.88672 0.86872 1.19895 0.94040 1.30039 1.05327 0.89642 1.26889 1.04508 0.94757 0.94439 1.70368 1.37243 1.17288 1.06458 0.85321 0.77179 0.78316 0.79653 1.19399 1.19378 1.18315 1.68559 1.10535 1.24095 1.19057 0.93326 0.90090 0.95049 0.93823 0.91273 0.87531 0.92074 0.90704 0.89741 0.89956 0.93260 0.91577 0.85020 0.73933 0.85519 0.84467 0.87474 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.02 10.50 113.37 1.19 2.21 16 2 O -0.39 -11.29 8.20 -124.67 -1.02 -12.31 16 3 C 0.08 1.84 4.53 71.98 0.33 2.16 16 4 C 0.14 3.29 3.15 44.98 0.14 3.43 16 5 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 6 C -0.12 -2.07 5.35 30.67 0.16 -1.91 16 7 C -0.11 -1.95 5.88 30.62 0.18 -1.77 16 8 C -0.12 -2.99 6.08 30.67 0.19 -2.80 16 9 C 0.05 1.43 6.27 86.31 0.54 1.98 16 10 N -0.57 -17.47 2.98 -795.97 -2.38 -19.85 16 11 C 0.50 18.10 7.48 87.24 0.65 18.75 16 12 O -0.50 -17.82 10.01 21.02 0.21 -17.61 16 13 C 0.46 19.65 7.74 87.24 0.67 20.33 16 14 O -0.41 -19.70 9.07 -3.27 -0.03 -19.73 16 15 N -0.63 -26.58 5.37 -309.71 -1.66 -28.25 16 16 C 0.35 17.06 7.42 133.30 0.99 18.05 16 17 C -0.34 -15.05 9.95 22.72 0.23 -14.82 16 18 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 19 C -0.32 -16.08 9.83 22.87 0.22 -15.85 16 20 C 0.24 13.50 6.53 40.20 0.26 13.76 16 21 C -0.46 -25.40 9.13 23.47 0.21 -25.18 16 22 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 23 C 0.02 1.03 5.48 85.29 0.47 1.49 16 24 N -0.69 -37.11 9.25 21.84 0.20 -36.91 16 25 Si 0.97 38.63 29.56 68.60 2.03 40.66 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 28 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 29 N -0.50 -28.13 5.74 -186.43 -1.07 -29.20 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 0.76 7.88 -2.39 -0.02 0.74 16 33 H 0.04 1.24 6.49 -2.39 -0.02 1.22 16 34 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.13 5.16 3.81 -76.76 -0.29 4.87 16 43 H 0.42 15.15 8.18 -92.71 -0.76 14.40 16 44 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 46 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 47 H 0.28 13.52 8.29 -92.71 -0.77 12.75 16 Total: -1.00 -67.94 373.20 2.91 -65.03 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.04 Total: 39.54 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.67 Total: 18.63 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -4.91 Total: -114.21 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -0.84 Total: -49.65 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -67.94 2.91 -65.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890317240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.031 kcal (2) G-P(sol) polarization free energy of solvation -67.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds