Wall clock time and date at job start Wed Apr 1 2020 04:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00392 * 2 1 4 4 C 1.50700 * 109.47218 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99750 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99913 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.54569 * 353.88584 * 6 4 3 8 8 C 1.53431 * 107.82751 * 224.53272 * 7 6 4 9 9 C 1.52839 * 108.85159 * 296.80821 * 8 7 6 10 10 C 1.50614 * 110.54736 * 51.36676 * 9 8 7 11 11 C 1.38580 * 118.85487 * 159.48541 * 10 9 8 12 12 C 1.37986 * 120.40108 * 179.76573 * 11 10 9 13 13 C 1.38930 * 120.08130 * 0.04587 * 12 11 10 14 14 N 1.39944 * 120.12388 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99950 * 324.46041 * 14 13 12 16 16 O 1.21587 * 120.00211 * 4.63477 * 15 14 13 17 17 N 1.34783 * 119.99927 * 184.64037 * 15 14 13 18 18 C 1.46501 * 119.99622 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.46802 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99660 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99931 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00014 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99847 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46898 * 119.99966 * 23 21 19 26 26 H 1.48504 * 109.47030 * 239.99830 * 23 21 19 27 27 C 1.38654 * 119.75971 * 0.02562 * 13 12 11 28 28 C 1.38645 * 121.47385 * 339.39254 * 10 9 8 29 29 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47051 * 300.00083 * 1 2 3 31 31 H 1.09005 * 109.47168 * 59.99933 * 1 2 3 32 32 H 1.08999 * 109.46744 * 59.99848 * 3 2 1 33 33 H 1.09003 * 109.46834 * 300.00309 * 3 2 1 34 34 H 1.09001 * 109.80214 * 344.13024 * 7 6 4 35 35 H 1.09002 * 109.79661 * 104.93496 * 7 6 4 36 36 H 1.08996 * 109.57831 * 56.55224 * 8 7 6 37 37 H 1.09000 * 109.57741 * 176.93767 * 8 7 6 38 38 H 1.08998 * 109.21932 * 291.09971 * 9 8 7 39 39 H 1.09001 * 109.24404 * 171.63871 * 9 8 7 40 40 H 1.07994 * 119.79482 * 359.78669 * 11 10 9 41 41 H 1.08002 * 119.95213 * 180.02562 * 12 11 10 42 42 H 0.97003 * 120.00225 * 144.45019 * 14 13 12 43 43 H 0.96998 * 119.99616 * 359.97438 * 17 15 14 44 44 H 1.08999 * 109.47389 * 299.99914 * 18 17 15 45 45 H 1.08997 * 109.47192 * 60.00218 * 18 17 15 46 46 H 0.96999 * 119.99937 * 180.02562 * 22 21 19 47 47 H 1.07998 * 120.01140 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0913 -0.0006 6 7 4.2766 2.2967 -0.0002 7 6 3.6633 3.6252 -0.1339 8 6 4.4985 4.4291 -1.1390 9 6 5.9061 4.6162 -0.5736 10 6 6.4823 3.2934 -0.1415 11 6 7.8567 3.1732 -0.0114 12 6 8.4185 1.9775 0.3871 13 6 7.6068 0.8835 0.6602 14 7 8.1755 -0.3294 1.0649 15 6 9.3599 -0.7216 0.5551 16 8 9.9746 0.0155 -0.1913 17 7 9.8629 -1.9311 0.8726 18 6 11.1500 -2.3576 0.3181 19 6 11.4826 -3.7376 0.8244 20 1 10.8033 -4.2457 1.4928 21 6 12.6545 -4.3508 0.4353 22 7 13.4819 -3.7318 -0.3782 23 14 13.0671 -6.0610 1.0635 24 1 11.9811 -6.5348 1.9586 25 1 13.2029 -6.9911 -0.0861 26 1 14.3455 -6.0161 1.8178 27 6 6.2311 0.9978 0.5302 28 6 5.6694 2.2032 0.1282 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 2.6414 3.5250 -0.4997 35 1 3.6617 4.1300 0.8321 36 1 4.5544 3.8876 -2.0833 37 1 4.0368 5.4031 -1.3012 38 1 5.8618 5.2869 0.2845 39 1 6.5458 5.0541 -1.3398 40 1 8.4919 4.0206 -0.2228 41 1 9.4905 1.8920 0.4865 42 1 7.7174 -0.8878 1.7124 43 1 9.3725 -2.5190 1.4683 44 1 11.0889 -2.3753 -0.7701 45 1 11.9280 -1.6596 0.6270 46 1 14.3062 -4.1634 -0.6523 47 1 5.5962 0.1502 0.7418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903369960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:12 Heat of formation + Delta-G solvation = -62.589848 kcal Electronic energy + Delta-G solvation = -29977.722915 eV Core-core repulsion = 25740.328941 eV Total energy + Delta-G solvation = -4237.393974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37112 -39.82663 -38.78865 -37.66133 -36.79334 -34.44582 -34.06388 -33.35624 -32.27252 -30.89157 -29.46380 -28.78426 -27.08966 -26.44717 -25.56616 -23.56694 -23.08461 -22.34341 -20.92631 -20.52740 -19.27807 -18.27702 -17.80325 -17.47744 -16.87834 -16.64654 -16.13589 -15.90206 -15.66896 -15.36381 -15.17796 -14.92620 -14.67413 -14.60584 -14.04093 -13.83347 -13.61105 -13.49360 -13.39839 -13.19191 -13.05407 -12.87777 -12.45070 -12.08642 -11.96833 -11.94616 -11.68092 -11.51606 -11.43990 -11.15013 -10.90568 -10.90030 -10.46301 -10.29119 -10.27518 -9.71257 -9.54468 -9.33921 -9.25674 -8.71943 -8.17991 -7.90340 -7.51252 -6.13414 -4.19860 1.34762 1.51565 2.18469 2.32295 3.22137 3.26639 3.33851 3.37200 3.44532 3.70158 4.01515 4.10152 4.23371 4.35264 4.40427 4.52291 4.57375 4.63750 4.83179 4.88050 4.89461 4.92208 5.03088 5.13279 5.21074 5.22840 5.22930 5.34786 5.49052 5.56070 5.60768 5.75591 5.79765 5.92922 6.15031 6.35164 6.51442 6.59800 6.69380 6.85348 7.06545 7.13521 7.35665 7.47897 7.55944 7.57533 7.76890 7.89091 8.03748 8.74984 8.89659 9.27154 9.47580 10.96881 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002260 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.507831 B =12388.151004 C =14269.058730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.047 3.953 4 C 0.510 3.490 5 O -0.488 6.488 6 N -0.551 5.551 7 C 0.101 3.899 8 C -0.136 4.136 9 C -0.072 4.072 10 C -0.143 4.143 11 C -0.082 4.082 12 C -0.135 4.135 13 C 0.198 3.802 14 N -0.693 5.693 15 C 0.692 3.308 16 O -0.583 6.583 17 N -0.722 5.722 18 C 0.266 3.734 19 C -0.541 4.541 20 H 0.064 0.936 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.185 4.185 28 C 0.168 3.832 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.403 0.597 43 H 0.389 0.611 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.265 0.735 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.919 19.270 2.456 34.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.033 4.033 4 C 0.299 3.701 5 O -0.361 6.361 6 N -0.278 5.278 7 C -0.022 4.022 8 C -0.173 4.173 9 C -0.109 4.109 10 C -0.146 4.146 11 C -0.101 4.101 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.341 5.341 15 C 0.392 3.608 16 O -0.461 6.461 17 N -0.374 5.374 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.141 4.141 22 N -0.523 5.523 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.207 4.207 28 C 0.075 3.925 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.238 0.762 43 H 0.221 0.779 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.075 0.925 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -26.772 19.009 1.647 32.875 hybrid contribution -0.358 -1.186 0.791 1.470 sum -27.130 17.823 2.438 32.552 Atomic orbital electron populations 1.22865 0.80041 1.03619 1.00131 1.88042 1.20025 1.24818 1.95402 1.22259 0.90989 0.87349 1.02676 1.20375 0.88875 0.83821 0.77074 1.90601 1.73226 1.26443 1.45818 1.45524 1.05124 1.07071 1.70034 1.22040 0.97131 0.82170 1.00810 1.21874 0.96011 1.00618 0.98846 1.20311 0.95432 0.94263 1.00868 1.19299 0.93320 0.94920 1.07091 1.20729 0.92979 0.97453 0.98950 1.21369 1.01603 0.90857 1.01766 1.17372 0.91068 0.85048 0.96445 1.42768 1.22777 1.21537 1.46990 1.16136 0.80333 0.83256 0.81036 1.90866 1.60208 1.54321 1.40700 1.45768 1.25397 1.14996 1.51237 1.19048 0.77484 0.94516 0.94458 1.21258 1.05878 1.00731 1.30121 0.91818 1.24946 0.95837 0.98409 0.94866 1.69988 1.11218 1.37883 1.33174 0.86344 0.78360 0.83450 0.78643 1.19642 1.20795 1.20815 1.21730 0.94227 0.99346 1.05413 1.17161 0.80984 0.94356 1.00013 0.88841 0.93698 0.93717 0.89867 0.90012 0.89339 0.90165 0.90775 0.89681 0.90765 0.90273 0.85634 0.83869 0.76189 0.77883 0.95523 0.95499 0.92508 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.66 10.24 -55.14 -0.56 -4.23 16 3 C 0.05 0.35 4.97 36.01 0.18 0.53 16 4 C 0.51 5.93 7.63 -10.98 -0.08 5.84 16 5 O -0.49 -7.91 13.16 -14.36 -0.19 -8.10 16 6 N -0.55 -5.69 2.97 -112.86 -0.34 -6.02 16 7 C 0.10 0.55 6.21 -3.59 -0.02 0.53 16 8 C -0.14 -0.77 6.11 -26.59 -0.16 -0.93 16 9 C -0.07 -0.55 5.77 -28.01 -0.16 -0.71 16 10 C -0.14 -1.71 5.76 -104.39 -0.60 -2.31 16 11 C -0.08 -1.10 9.65 -39.55 -0.38 -1.49 16 12 C -0.13 -2.28 8.69 -39.42 -0.34 -2.62 16 13 C 0.20 3.40 6.29 -83.74 -0.53 2.87 16 14 N -0.69 -12.15 5.34 -14.26 -0.08 -12.22 16 15 C 0.69 15.14 8.41 -86.91 -0.73 14.41 16 16 O -0.58 -14.80 13.81 5.29 0.07 -14.73 16 17 N -0.72 -16.10 5.55 -66.41 -0.37 -16.47 16 18 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 19 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 20 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 23 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.18 -2.92 8.79 -39.18 -0.34 -3.26 16 28 C 0.17 2.25 6.31 -83.63 -0.53 1.73 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.37 7.31 -51.93 -0.38 -0.01 16 34 H 0.09 0.23 6.12 -51.93 -0.32 -0.09 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 40 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.14 2.73 6.26 -52.49 -0.33 2.41 16 42 H 0.40 5.77 8.84 -40.82 -0.36 5.41 16 43 H 0.39 7.44 8.34 -40.82 -0.34 7.10 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.17 2.76 4.96 -53.74 -0.27 2.50 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -37.73 386.32 -9.56 -47.30 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.60 Total: 8.74 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -3.04 Total: 9.43 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.04 Total: -60.49 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.68 Total: -27.06 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.73 -9.56 -47.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903369960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.293 kcal (2) G-P(sol) polarization free energy of solvation -37.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds