Wall clock time and date at job start Wed Apr 1 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00392 * 2 1 4 4 C 1.50700 * 109.47218 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99750 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99913 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.54569 * 353.88584 * 6 4 3 8 8 C 1.53431 * 107.82751 * 224.53272 * 7 6 4 9 9 C 1.52839 * 108.85159 * 296.80821 * 8 7 6 10 10 C 1.50614 * 110.54736 * 51.36676 * 9 8 7 11 11 C 1.38580 * 118.85487 * 159.48541 * 10 9 8 12 12 C 1.37986 * 120.40108 * 179.76573 * 11 10 9 13 13 C 1.38930 * 120.08130 * 0.04587 * 12 11 10 14 14 N 1.39944 * 120.12388 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99950 * 324.46041 * 14 13 12 16 16 O 1.21587 * 120.00211 * 4.63477 * 15 14 13 17 17 N 1.34783 * 119.99927 * 184.64037 * 15 14 13 18 18 C 1.46501 * 119.99622 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.46802 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99660 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99931 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00014 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99847 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46898 * 119.99966 * 23 21 19 26 26 H 1.48504 * 109.47030 * 239.99830 * 23 21 19 27 27 C 1.38654 * 119.75971 * 0.02562 * 13 12 11 28 28 C 1.38645 * 121.47385 * 339.39254 * 10 9 8 29 29 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47051 * 300.00083 * 1 2 3 31 31 H 1.09005 * 109.47168 * 59.99933 * 1 2 3 32 32 H 1.08999 * 109.46744 * 59.99848 * 3 2 1 33 33 H 1.09003 * 109.46834 * 300.00309 * 3 2 1 34 34 H 1.09001 * 109.80214 * 344.13024 * 7 6 4 35 35 H 1.09002 * 109.79661 * 104.93496 * 7 6 4 36 36 H 1.08996 * 109.57831 * 56.55224 * 8 7 6 37 37 H 1.09000 * 109.57741 * 176.93767 * 8 7 6 38 38 H 1.08998 * 109.21932 * 291.09971 * 9 8 7 39 39 H 1.09001 * 109.24404 * 171.63871 * 9 8 7 40 40 H 1.07994 * 119.79482 * 359.78669 * 11 10 9 41 41 H 1.08002 * 119.95213 * 180.02562 * 12 11 10 42 42 H 0.97003 * 120.00225 * 144.45019 * 14 13 12 43 43 H 0.96998 * 119.99616 * 359.97438 * 17 15 14 44 44 H 1.08999 * 109.47389 * 299.99914 * 18 17 15 45 45 H 1.08997 * 109.47192 * 60.00218 * 18 17 15 46 46 H 0.96999 * 119.99937 * 180.02562 * 22 21 19 47 47 H 1.07998 * 120.01140 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0913 -0.0006 6 7 4.2766 2.2967 -0.0002 7 6 3.6633 3.6252 -0.1339 8 6 4.4985 4.4291 -1.1390 9 6 5.9061 4.6162 -0.5736 10 6 6.4823 3.2934 -0.1415 11 6 7.8567 3.1732 -0.0114 12 6 8.4185 1.9775 0.3871 13 6 7.6068 0.8835 0.6602 14 7 8.1755 -0.3294 1.0649 15 6 9.3599 -0.7216 0.5551 16 8 9.9746 0.0155 -0.1913 17 7 9.8629 -1.9311 0.8726 18 6 11.1500 -2.3576 0.3181 19 6 11.4826 -3.7376 0.8244 20 1 10.8033 -4.2457 1.4928 21 6 12.6545 -4.3508 0.4353 22 7 13.4819 -3.7318 -0.3782 23 14 13.0671 -6.0610 1.0635 24 1 11.9811 -6.5348 1.9586 25 1 13.2029 -6.9911 -0.0861 26 1 14.3455 -6.0161 1.8178 27 6 6.2311 0.9978 0.5302 28 6 5.6694 2.2032 0.1282 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 2.6414 3.5250 -0.4997 35 1 3.6617 4.1300 0.8321 36 1 4.5544 3.8876 -2.0833 37 1 4.0368 5.4031 -1.3012 38 1 5.8618 5.2869 0.2845 39 1 6.5458 5.0541 -1.3398 40 1 8.4919 4.0206 -0.2228 41 1 9.4905 1.8920 0.4865 42 1 7.7174 -0.8878 1.7124 43 1 9.3725 -2.5190 1.4683 44 1 11.0889 -2.3753 -0.7701 45 1 11.9280 -1.6596 0.6270 46 1 14.3062 -4.1634 -0.6523 47 1 5.5962 0.1502 0.7418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903369960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:11 Heat of formation + Delta-G solvation = -90.535554 kcal Electronic energy + Delta-G solvation = -29978.934732 eV Core-core repulsion = 25740.328941 eV Total energy + Delta-G solvation = -4238.605791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.30283 -41.34554 -39.78588 -38.40043 -37.85435 -36.21136 -35.60198 -34.49764 -34.09783 -31.83796 -30.64877 -29.48449 -28.99900 -27.01023 -26.31237 -25.07741 -24.23297 -23.72663 -22.16158 -21.77192 -20.44980 -19.80395 -18.84268 -18.51832 -17.94353 -17.48213 -17.44958 -16.94643 -16.89193 -16.64462 -16.38257 -16.11981 -16.04781 -15.53384 -15.45174 -15.01594 -14.84060 -14.47974 -14.17738 -14.16909 -14.07889 -14.05790 -13.92341 -13.67718 -13.15702 -12.94926 -12.85382 -12.76987 -12.41832 -12.32754 -12.23437 -12.05850 -11.86678 -11.48250 -11.41291 -11.25940 -10.84617 -10.76788 -10.75379 -10.48750 -9.95613 -9.26476 -8.72319 -8.31235 -6.47880 0.22635 0.34721 1.40467 1.43387 1.43812 1.44774 1.56718 1.73092 2.07061 2.37022 2.82539 2.87820 3.03655 3.33896 3.42336 3.76210 3.85673 3.99233 4.06333 4.11724 4.21929 4.29406 4.35460 4.37153 4.50163 4.53577 4.59495 4.67637 4.73925 4.81882 4.89933 4.96230 5.03380 5.10746 5.13685 5.21583 5.32285 5.32724 5.39463 5.41859 5.53947 5.61131 5.66068 5.79554 6.01060 6.13422 6.13861 6.28528 6.62560 6.94305 7.10226 7.22033 7.53664 8.81408 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002260 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.507831 B =12388.151004 C =14269.058730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.052 3.948 4 C 0.499 3.501 5 O -0.548 6.548 6 N -0.548 5.548 7 C 0.089 3.911 8 C -0.132 4.132 9 C -0.075 4.075 10 C -0.128 4.128 11 C -0.082 4.082 12 C -0.161 4.161 13 C 0.165 3.835 14 N -0.676 5.676 15 C 0.693 3.307 16 O -0.623 6.623 17 N -0.717 5.717 18 C 0.285 3.715 19 C -0.556 4.556 20 H 0.083 0.917 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.988 3.012 24 H -0.255 1.255 25 H -0.278 1.278 26 H -0.276 1.276 27 C -0.194 4.194 28 C 0.163 3.837 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.418 0.582 43 H 0.406 0.594 44 H -0.013 1.013 45 H -0.008 1.008 46 H 0.270 0.730 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.618 21.155 3.113 38.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.026 4.026 4 C 0.290 3.710 5 O -0.425 6.425 6 N -0.273 5.273 7 C -0.030 4.030 8 C -0.170 4.170 9 C -0.111 4.111 10 C -0.131 4.131 11 C -0.101 4.101 12 C -0.182 4.182 13 C 0.069 3.931 14 N -0.325 5.325 15 C 0.393 3.607 16 O -0.504 6.504 17 N -0.370 5.370 18 C 0.163 3.837 19 C -0.594 4.594 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.568 5.568 23 Si 0.811 3.189 24 H -0.178 1.178 25 H -0.203 1.203 26 H -0.202 1.202 27 C -0.217 4.217 28 C 0.068 3.932 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.168 0.832 41 H 0.130 0.870 42 H 0.255 0.745 43 H 0.241 0.759 44 H 0.005 0.995 45 H 0.010 0.990 46 H 0.079 0.921 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -30.581 20.956 2.341 37.147 hybrid contribution 0.658 -1.579 0.539 1.793 sum -29.923 19.378 2.880 35.766 Atomic orbital electron populations 1.23046 0.77902 1.04135 1.01958 1.87984 1.22446 1.26736 1.95837 1.22439 0.87237 0.87045 1.05916 1.21405 0.90965 0.83147 0.75519 1.90573 1.74575 1.28806 1.48562 1.45808 1.03633 1.09005 1.68809 1.22560 0.98647 0.79543 1.02262 1.21921 0.94783 1.02495 0.97787 1.20500 0.96854 0.91572 1.02211 1.19823 0.92429 0.96631 1.04225 1.21036 0.94393 0.96772 0.97900 1.21265 1.00138 0.92689 1.04106 1.17576 0.91888 0.84747 0.98867 1.42437 1.21214 1.22110 1.46705 1.16227 0.81190 0.82645 0.80639 1.90834 1.61709 1.55329 1.42495 1.45365 1.24273 1.15687 1.51670 1.18490 0.78684 0.94370 0.92193 1.21609 1.06611 1.00682 1.30511 0.89925 1.26076 0.95467 1.03307 0.94729 1.70144 1.11888 1.40216 1.34526 0.85065 0.78517 0.77140 0.78193 1.17846 1.20348 1.20164 1.21736 0.93240 1.00525 1.06155 1.17386 0.83275 0.93692 0.98833 0.89209 0.91768 0.91849 0.86290 0.86436 0.85553 0.88035 0.92351 0.85683 0.88242 0.89338 0.83174 0.87038 0.74511 0.75886 0.99522 0.99030 0.92135 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.59 10.24 -129.94 -1.33 -8.92 16 3 C 0.05 0.60 4.97 71.24 0.35 0.95 16 4 C 0.50 10.94 7.63 87.66 0.67 11.61 16 5 O -0.55 -18.37 13.16 15.98 0.21 -18.16 16 6 N -0.55 -10.05 2.97 -629.36 -1.87 -11.92 16 7 C 0.09 0.54 6.21 86.44 0.54 1.08 16 8 C -0.13 -0.85 6.11 30.69 0.19 -0.66 16 9 C -0.07 -0.84 5.77 29.77 0.17 -0.67 16 10 C -0.13 -2.86 5.76 -19.71 -0.11 -2.97 16 11 C -0.08 -2.22 9.65 22.29 0.22 -2.01 16 12 C -0.16 -5.83 8.69 22.38 0.19 -5.63 16 13 C 0.16 6.08 6.29 38.11 0.24 6.32 16 14 N -0.68 -25.52 5.34 -317.28 -1.70 -27.22 16 15 C 0.69 32.60 8.41 179.05 1.51 34.10 16 16 O -0.62 -34.34 13.81 -3.99 -0.06 -34.40 16 17 N -0.72 -33.87 5.55 -482.28 -2.68 -36.55 16 18 C 0.29 16.63 5.43 85.63 0.46 17.10 16 19 C -0.56 -31.67 9.28 25.60 0.24 -31.43 16 20 H 0.08 4.29 7.60 -2.91 -0.02 4.27 16 21 C 0.00 0.22 5.46 84.65 0.46 0.69 16 22 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 23 Si 0.99 43.86 29.54 68.60 2.03 45.88 16 24 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 C -0.19 -6.43 8.79 22.53 0.20 -6.24 16 28 C 0.16 4.27 6.31 38.07 0.24 4.51 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.12 0.47 7.31 -2.39 -0.02 0.46 16 34 H 0.13 -0.16 6.12 -2.39 -0.01 -0.17 16 35 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 39 H 0.09 0.91 8.12 -2.39 -0.02 0.89 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.11 4.72 6.26 -2.91 -0.02 4.70 16 42 H 0.42 12.83 8.84 -92.71 -0.82 12.01 16 43 H 0.41 16.11 8.34 -92.71 -0.77 15.34 16 44 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 45 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.16 5.53 4.96 -22.68 -0.11 5.42 16 Total: -1.00 -91.30 386.32 1.04 -90.26 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.66 Total: 30.11 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 6.81 Total: 28.20 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -5.96 Total: -132.97 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -1.17 Total: -61.48 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -91.30 1.04 -90.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903369960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.273 kcal (2) G-P(sol) polarization free energy of solvation -91.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds