Wall clock time and date at job start Wed Apr 1 2020 04:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36017 * 116.99743 * 2 1 4 4 C 1.35845 * 120.31411 * 0.02562 * 3 2 1 5 5 N 1.35444 * 120.77825 * 180.02562 * 4 3 2 6 6 H 0.96996 * 119.29572 * 180.02562 * 5 4 3 7 7 C 1.36429 * 121.40551 * 0.02562 * 5 4 3 8 8 C 1.48078 * 119.71646 * 179.97438 * 7 5 4 9 9 O 1.21515 * 119.99768 * 179.97438 * 8 7 5 10 10 N 1.34779 * 119.99802 * 359.97438 * 8 7 5 11 11 C 1.46494 * 119.99594 * 180.02562 * 10 8 7 12 12 C 1.53949 * 113.58233 * 252.71928 * 11 10 8 13 13 C 1.52908 * 86.78544 * 220.66705 * 12 11 10 14 14 C 1.52910 * 121.13704 * 150.61551 * 13 12 11 15 15 C 1.53949 * 86.78057 * 100.82543 * 14 13 12 16 16 N 1.46496 * 113.58190 * 139.33888 * 15 14 13 17 17 C 1.36935 * 120.00168 * 107.27739 * 16 15 14 18 18 H 1.07999 * 120.00386 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99698 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00328 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46839 * 60.00292 * 21 19 17 23 23 H 1.48496 * 109.47283 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47254 * 300.00086 * 21 19 17 25 25 C 1.52918 * 121.13608 * 259.17998 * 13 12 11 26 26 C 1.52913 * 88.04152 * 24.89537 * 13 12 11 27 27 C 1.36176 * 120.56202 * 359.95641 * 7 5 4 28 28 C 1.41575 * 120.31119 * 179.72508 * 3 2 1 29 29 O 1.22267 * 120.65381 * 359.97438 * 28 3 2 30 30 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47054 * 299.99759 * 1 2 3 32 32 H 1.09000 * 109.47187 * 59.99815 * 1 2 3 33 33 H 1.07998 * 119.61777 * 0.02562 * 4 3 2 34 34 H 0.96994 * 119.99798 * 0.02562 * 10 8 7 35 35 H 1.09003 * 112.82547 * 23.91534 * 11 10 8 36 36 H 1.09002 * 113.66067 * 335.14219 * 12 11 10 37 37 H 1.09003 * 113.66214 * 106.19090 * 12 11 10 38 38 H 1.08995 * 113.65960 * 215.29103 * 14 13 12 39 39 H 1.08993 * 113.66145 * 346.34862 * 14 13 12 40 40 H 1.09007 * 113.57670 * 270.12823 * 15 14 13 41 41 H 0.96996 * 119.99752 * 287.27391 * 16 15 14 42 42 H 0.96993 * 119.99725 * 179.97438 * 20 19 17 43 43 H 1.08994 * 113.66228 * 13.65085 * 25 13 12 44 44 H 1.08997 * 113.65999 * 144.61180 * 25 13 12 45 45 H 1.09003 * 113.66558 * 220.62963 * 26 13 12 46 46 H 1.08997 * 113.66030 * 89.57509 * 26 13 12 47 47 H 1.08008 * 120.40294 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 0.0005 5 7 1.9179 3.5670 0.0000 6 1 1.3731 4.3695 0.0008 7 6 3.2773 3.6829 -0.0016 8 6 3.8994 5.0266 -0.0027 9 8 5.1097 5.1358 -0.0036 10 7 3.1233 6.1286 -0.0026 11 6 3.7389 7.4579 -0.0043 12 6 3.6188 8.1939 1.3426 13 6 3.3335 9.4567 0.5290 14 6 2.4565 10.5770 1.0895 15 6 3.7647 11.3233 1.4087 16 7 3.7038 12.7596 1.1270 17 6 3.6419 13.6577 2.1588 18 1 3.6375 13.3073 3.1803 19 6 3.5847 15.0188 1.8918 20 7 3.5905 15.4460 0.6469 21 14 3.4995 16.2439 3.2993 22 1 4.7029 16.0969 4.1570 23 1 3.4466 17.6234 2.7523 24 1 2.2809 15.9854 4.1076 25 6 4.4220 10.5025 0.2844 26 6 2.8366 8.5536 -0.6004 27 6 4.0668 2.5734 -0.0018 28 6 3.4599 1.2938 0.0059 29 8 4.1430 0.2798 0.0115 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2344 2.2974 0.0014 34 1 2.1573 6.0413 -0.0015 35 1 4.7495 7.4554 -0.4126 36 1 2.7747 7.8634 1.9479 37 1 4.5529 8.2361 1.9028 38 1 1.8437 11.0714 0.3358 39 1 1.8905 10.2880 1.9749 40 1 4.1621 11.1023 2.3994 41 1 3.7073 13.0744 0.2095 42 1 3.5502 16.3970 0.4603 43 1 5.4259 10.1538 0.5267 44 1 4.3625 10.9747 -0.6962 45 1 3.1457 8.8832 -1.5924 46 1 1.7726 8.3243 -0.5412 47 1 5.1427 2.6681 -0.0035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964339777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:19 Heat of formation + Delta-G solvation = -5.547439 kcal Electronic energy + Delta-G solvation = -29111.487522 eV Core-core repulsion = 24876.567092 eV Total energy + Delta-G solvation = -4234.920430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92898 -40.73657 -39.66002 -38.46484 -38.03201 -36.16845 -33.96358 -32.50734 -32.04619 -31.06302 -29.59727 -28.15075 -25.97394 -25.57816 -25.28551 -24.09077 -23.65679 -22.59514 -21.23073 -20.54964 -19.94272 -18.66114 -18.10006 -17.85476 -17.06249 -16.72355 -16.61373 -16.55290 -15.79663 -15.77020 -15.23747 -14.99644 -14.88197 -14.83136 -14.57376 -14.24534 -14.06913 -13.57829 -13.55050 -13.23903 -12.90777 -12.77537 -12.59426 -12.31927 -12.08063 -11.93648 -11.79440 -11.47621 -11.08388 -11.02339 -10.84632 -10.75766 -10.39205 -10.15047 -9.95442 -9.94429 -9.92177 -9.80645 -9.56470 -9.38150 -8.90678 -8.16132 -7.00458 -5.82368 -3.11150 0.17817 0.69041 2.01911 2.32265 2.34201 2.73868 3.25515 3.40130 3.44945 3.45729 3.81403 3.95875 4.13676 4.33649 4.42248 4.44584 4.55946 4.57227 4.58741 4.59488 4.70555 4.93489 5.01405 5.22078 5.27200 5.30507 5.43059 5.50890 5.58515 5.65682 5.68854 5.80250 5.85569 5.86740 5.99202 6.07258 6.11940 6.14343 6.24450 6.27761 6.33444 6.54034 6.68468 6.78267 6.87939 7.05504 7.46023 7.58862 7.65084 8.36413 9.47457 10.05531 10.39698 11.39929 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030101 B = 0.001575 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.992390 B =17778.124677 C =18176.656865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.030 4.030 4 C 0.026 3.974 5 N -0.564 5.564 6 H 0.419 0.581 7 C 0.122 3.878 8 C 0.557 3.443 9 O -0.499 6.499 10 N -0.711 5.711 11 C 0.121 3.879 12 C -0.124 4.124 13 C -0.102 4.102 14 C -0.148 4.148 15 C 0.168 3.832 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.208 4.208 28 C 0.399 3.601 29 O -0.492 6.492 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.171 0.829 34 H 0.394 0.606 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 -26.784 -3.620 28.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.199 6.199 3 C -0.081 4.081 4 C -0.100 4.100 5 N -0.179 5.179 6 H 0.256 0.744 7 C 0.010 3.990 8 C 0.341 3.659 9 O -0.372 6.372 10 N -0.362 5.362 11 C 0.018 3.982 12 C -0.163 4.163 13 C -0.103 4.103 14 C -0.190 4.190 15 C 0.056 3.944 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.168 4.168 26 C -0.168 4.168 27 C -0.236 4.236 28 C 0.288 3.712 29 O -0.375 6.375 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.188 0.812 34 H 0.229 0.771 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.999 -27.331 -3.459 28.982 hybrid contribution -1.415 1.332 0.421 1.988 sum -10.414 -25.999 -3.038 28.172 Atomic orbital electron populations 1.23161 0.78948 1.04713 1.00976 1.86297 1.20494 1.24206 1.88901 1.20444 0.94818 0.84762 1.08116 1.21633 0.98821 0.84058 1.05516 1.40651 1.04995 1.08471 1.63735 0.74428 1.20402 0.82859 0.95711 1.00023 1.17956 0.87249 0.82985 0.77751 1.90885 1.12871 1.85663 1.47750 1.46049 1.09425 1.06359 1.74396 1.22855 0.99011 0.77950 0.98411 1.23158 1.02585 0.94544 0.95973 1.22072 0.99992 0.92326 0.95886 1.23651 0.99383 0.95950 0.99979 1.21532 0.92696 0.84366 0.95782 1.42400 1.86817 0.99195 1.06655 1.19262 1.42900 0.87340 0.88132 0.91161 1.24761 1.02788 0.97001 0.96298 1.69647 1.57342 1.14042 1.17035 0.86267 0.77881 0.80647 0.81385 1.21207 1.21669 1.21274 1.23231 0.96550 0.95776 1.01279 1.23202 0.99050 0.95012 0.99537 1.22524 1.02446 0.90403 1.08188 1.16820 0.86172 0.89827 0.78348 1.90877 1.65703 1.37512 1.43440 0.87764 0.92646 0.92649 0.81216 0.77129 0.86127 0.89746 0.90531 0.90239 0.92704 0.90756 0.78108 0.93408 0.91946 0.89932 0.90477 0.89828 0.81215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 101.05 0.99 1.05 16 2 O -0.29 -2.63 10.33 -35.62 -0.37 -3.00 16 3 C -0.03 -0.26 6.71 -39.17 -0.26 -0.53 16 4 C 0.03 0.11 10.22 -16.82 -0.17 -0.06 16 5 N -0.56 -2.04 5.26 -9.58 -0.05 -2.09 16 6 H 0.42 0.02 7.00 -40.82 -0.29 -0.26 16 7 C 0.12 0.88 6.77 -82.53 -0.56 0.33 16 8 C 0.56 4.82 7.80 -12.22 -0.10 4.72 16 9 O -0.50 -6.38 15.87 5.35 0.08 -6.29 16 10 N -0.71 -4.46 5.35 -53.73 -0.29 -4.75 16 11 C 0.12 1.06 4.24 -66.95 -0.28 0.78 16 12 C -0.12 -1.24 7.64 -26.28 -0.20 -1.44 16 13 C -0.10 -1.20 1.11 -154.71 -0.17 -1.37 16 14 C -0.15 -2.26 7.64 -26.28 -0.20 -2.46 16 15 C 0.17 3.11 4.48 -66.95 -0.30 2.81 16 16 N -0.71 -17.18 5.40 -52.48 -0.28 -17.46 16 17 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.13 -1.93 7.59 -26.28 -0.20 -2.13 16 26 C -0.13 -1.15 7.59 -26.28 -0.20 -1.35 16 27 C -0.21 -2.09 9.53 -39.03 -0.37 -2.46 16 28 C 0.40 4.78 6.78 -37.02 -0.25 4.53 16 29 O -0.49 -7.98 17.71 -11.15 -0.20 -8.18 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.10 7.66 -51.93 -0.40 -0.30 16 32 H 0.05 0.10 7.66 -51.93 -0.40 -0.30 16 33 H 0.17 0.07 6.21 -52.49 -0.33 -0.25 16 34 H 0.39 1.06 6.94 -40.82 -0.28 0.77 16 35 H 0.12 1.27 7.46 -51.93 -0.39 0.89 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.40 8.10 -51.92 -0.42 0.98 16 41 H 0.38 9.85 7.92 -40.82 -0.32 9.53 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 47 H 0.17 1.82 7.58 -52.48 -0.40 1.42 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -36.97 393.13 -8.57 -45.53 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.57 Total: 5.06 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.52 Total: -4.80 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.10 Total: -51.11 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.48 Total: -17.48 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.97 -8.57 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964339777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.985 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds