Wall clock time and date at job start Wed Apr 1 2020 04:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36017 * 116.99743 * 2 1 4 4 C 1.35845 * 120.31411 * 0.02562 * 3 2 1 5 5 N 1.35444 * 120.77825 * 180.02562 * 4 3 2 6 6 H 0.96996 * 119.29572 * 180.02562 * 5 4 3 7 7 C 1.36429 * 121.40551 * 0.02562 * 5 4 3 8 8 C 1.48078 * 119.71646 * 179.97438 * 7 5 4 9 9 O 1.21515 * 119.99768 * 179.97438 * 8 7 5 10 10 N 1.34779 * 119.99802 * 359.97438 * 8 7 5 11 11 C 1.46494 * 119.99594 * 180.02562 * 10 8 7 12 12 C 1.53949 * 113.58233 * 252.71928 * 11 10 8 13 13 C 1.52908 * 86.78544 * 220.66705 * 12 11 10 14 14 C 1.52910 * 121.13704 * 150.61551 * 13 12 11 15 15 C 1.53949 * 86.78057 * 100.82543 * 14 13 12 16 16 N 1.46496 * 113.58190 * 139.33888 * 15 14 13 17 17 C 1.36935 * 120.00168 * 107.27739 * 16 15 14 18 18 H 1.07999 * 120.00386 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99698 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00328 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46839 * 60.00292 * 21 19 17 23 23 H 1.48496 * 109.47283 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47254 * 300.00086 * 21 19 17 25 25 C 1.52918 * 121.13608 * 259.17998 * 13 12 11 26 26 C 1.52913 * 88.04152 * 24.89537 * 13 12 11 27 27 C 1.36176 * 120.56202 * 359.95641 * 7 5 4 28 28 C 1.41575 * 120.31119 * 179.72508 * 3 2 1 29 29 O 1.22267 * 120.65381 * 359.97438 * 28 3 2 30 30 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47054 * 299.99759 * 1 2 3 32 32 H 1.09000 * 109.47187 * 59.99815 * 1 2 3 33 33 H 1.07998 * 119.61777 * 0.02562 * 4 3 2 34 34 H 0.96994 * 119.99798 * 0.02562 * 10 8 7 35 35 H 1.09003 * 112.82547 * 23.91534 * 11 10 8 36 36 H 1.09002 * 113.66067 * 335.14219 * 12 11 10 37 37 H 1.09003 * 113.66214 * 106.19090 * 12 11 10 38 38 H 1.08995 * 113.65960 * 215.29103 * 14 13 12 39 39 H 1.08993 * 113.66145 * 346.34862 * 14 13 12 40 40 H 1.09007 * 113.57670 * 270.12823 * 15 14 13 41 41 H 0.96996 * 119.99752 * 287.27391 * 16 15 14 42 42 H 0.96993 * 119.99725 * 179.97438 * 20 19 17 43 43 H 1.08994 * 113.66228 * 13.65085 * 25 13 12 44 44 H 1.08997 * 113.65999 * 144.61180 * 25 13 12 45 45 H 1.09003 * 113.66558 * 220.62963 * 26 13 12 46 46 H 1.08997 * 113.66030 * 89.57509 * 26 13 12 47 47 H 1.08008 * 120.40294 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 0.0005 5 7 1.9179 3.5670 0.0000 6 1 1.3731 4.3695 0.0008 7 6 3.2773 3.6829 -0.0016 8 6 3.8994 5.0266 -0.0027 9 8 5.1097 5.1358 -0.0036 10 7 3.1233 6.1286 -0.0026 11 6 3.7389 7.4579 -0.0043 12 6 3.6188 8.1939 1.3426 13 6 3.3335 9.4567 0.5290 14 6 2.4565 10.5770 1.0895 15 6 3.7647 11.3233 1.4087 16 7 3.7038 12.7596 1.1270 17 6 3.6419 13.6577 2.1588 18 1 3.6375 13.3073 3.1803 19 6 3.5847 15.0188 1.8918 20 7 3.5905 15.4460 0.6469 21 14 3.4995 16.2439 3.2993 22 1 4.7029 16.0969 4.1570 23 1 3.4466 17.6234 2.7523 24 1 2.2809 15.9854 4.1076 25 6 4.4220 10.5025 0.2844 26 6 2.8366 8.5536 -0.6004 27 6 4.0668 2.5734 -0.0018 28 6 3.4599 1.2938 0.0059 29 8 4.1430 0.2798 0.0115 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2344 2.2974 0.0014 34 1 2.1573 6.0413 -0.0015 35 1 4.7495 7.4554 -0.4126 36 1 2.7747 7.8634 1.9479 37 1 4.5529 8.2361 1.9028 38 1 1.8437 11.0714 0.3358 39 1 1.8905 10.2880 1.9749 40 1 4.1621 11.1023 2.3994 41 1 3.7073 13.0744 0.2095 42 1 3.5502 16.3970 0.4603 43 1 5.4259 10.1538 0.5267 44 1 4.3625 10.9747 -0.6962 45 1 3.1457 8.8832 -1.5924 46 1 1.7726 8.3243 -0.5412 47 1 5.1427 2.6681 -0.0035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964339777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:18 Heat of formation + Delta-G solvation = -33.340532 kcal Electronic energy + Delta-G solvation = -29112.692721 eV Core-core repulsion = 24876.567092 eV Total energy + Delta-G solvation = -4236.125628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.58641 -41.60984 -40.49782 -39.05543 -38.80268 -37.33574 -35.38216 -33.83824 -32.76167 -31.87323 -31.22234 -28.44528 -26.75443 -26.68898 -26.33710 -25.72904 -24.30158 -23.58098 -22.00645 -21.61272 -20.71107 -19.50769 -19.20794 -18.67513 -18.50062 -17.40172 -17.32922 -17.16866 -16.88996 -16.43093 -16.34838 -15.98439 -15.79955 -15.60982 -15.52645 -15.22807 -15.18793 -14.78926 -14.42513 -14.22987 -13.84742 -13.62991 -13.62289 -13.47170 -13.09741 -12.93593 -12.79201 -12.39714 -12.38023 -12.28263 -12.26108 -12.08627 -11.91689 -11.67970 -11.23539 -11.03894 -10.81046 -10.77941 -10.68064 -10.56688 -10.18497 -8.94787 -8.79945 -7.93506 -5.21022 -0.54370 0.12178 1.43998 1.48039 1.50415 1.56540 1.59825 1.71635 2.31246 2.54261 2.57571 3.30226 3.38179 3.49211 3.53382 3.55681 3.64981 3.69291 3.80787 3.83354 4.02354 4.31257 4.33852 4.36720 4.42280 4.46788 4.48080 4.60835 4.63968 4.80903 4.83305 4.83846 4.93822 4.98437 5.02946 5.04374 5.10557 5.14161 5.26909 5.35222 5.45838 5.52243 5.61464 5.73537 5.79717 6.23640 6.29202 6.29399 6.84188 6.90133 7.35015 8.14122 8.35921 9.29568 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030101 B = 0.001575 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.992390 B =17778.124677 C =18176.656865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.326 6.326 3 C -0.063 4.063 4 C 0.076 3.924 5 N -0.530 5.530 6 H 0.444 0.556 7 C 0.148 3.852 8 C 0.562 3.438 9 O -0.543 6.543 10 N -0.687 5.687 11 C 0.129 3.871 12 C -0.120 4.120 13 C -0.090 4.090 14 C -0.135 4.135 15 C 0.142 3.858 16 N -0.729 5.729 17 C -0.244 4.244 18 H 0.075 0.925 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.971 3.029 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.277 1.277 25 C -0.126 4.126 26 C -0.114 4.114 27 C -0.234 4.234 28 C 0.375 3.625 29 O -0.571 6.571 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.417 0.583 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 -26.981 -3.151 30.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.240 6.240 3 C -0.113 4.113 4 C -0.053 4.053 5 N -0.144 5.144 6 H 0.287 0.713 7 C 0.033 3.967 8 C 0.346 3.654 9 O -0.419 6.419 10 N -0.340 5.340 11 C 0.025 3.975 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.176 4.176 15 C 0.032 3.968 16 N -0.367 5.367 17 C -0.376 4.376 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.800 3.200 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.203 1.203 25 C -0.165 4.165 26 C -0.152 4.152 27 C -0.262 4.262 28 C 0.271 3.729 29 O -0.461 6.461 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.244 0.756 34 H 0.256 0.744 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.135 0.865 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.000 -27.520 -2.966 30.580 hybrid contribution -0.304 1.457 0.298 1.518 sum -13.304 -26.062 -2.668 29.383 Atomic orbital electron populations 1.23517 0.76186 1.06025 1.03148 1.86248 1.23447 1.24776 1.89482 1.20193 0.93626 0.86462 1.11033 1.22276 1.00629 0.82240 1.00159 1.40805 1.03812 1.09833 1.59918 0.71333 1.19997 0.84080 0.94064 0.98587 1.18004 0.86716 0.83575 0.77103 1.90889 1.15072 1.86181 1.49726 1.45744 1.10458 1.04768 1.72986 1.22547 0.98544 0.78879 0.97561 1.23216 1.03001 0.93203 0.96449 1.21871 0.97090 0.92002 0.98173 1.23368 0.97690 0.96319 1.00200 1.21973 0.95890 0.82084 0.96813 1.42594 1.87427 1.01261 1.05408 1.19669 1.40760 0.88109 0.89063 0.90695 1.25538 1.03936 0.98859 0.98515 1.69802 1.59571 1.13751 1.18919 0.85251 0.78148 0.77957 0.78658 1.20636 1.22309 1.20304 1.23099 0.97721 0.96295 0.99344 1.23188 1.00842 0.93028 0.98182 1.22270 1.02092 0.91026 1.10794 1.17352 0.88090 0.89491 0.77942 1.90823 1.67327 1.39329 1.48651 0.87346 0.90298 0.90235 0.75617 0.74366 0.87984 0.87310 0.91793 0.91460 0.91660 0.91456 0.79504 0.94106 0.91777 0.90761 0.90418 0.86489 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.81 113.37 1.11 1.13 16 2 O -0.33 -5.75 10.33 -78.61 -0.81 -6.56 16 3 C -0.06 -1.03 6.71 22.54 0.15 -0.87 16 4 C 0.08 0.27 10.22 83.58 0.85 1.12 16 5 N -0.53 -1.01 5.26 -184.21 -0.97 -1.98 16 6 H 0.44 -3.29 7.00 -92.71 -0.65 -3.94 16 7 C 0.15 1.78 6.77 40.56 0.27 2.05 16 8 C 0.56 8.26 7.80 86.85 0.68 8.94 16 9 O -0.54 -13.59 15.87 -3.76 -0.06 -13.65 16 10 N -0.69 -5.42 5.35 -442.18 -2.36 -7.79 16 11 C 0.13 1.79 4.24 45.63 0.19 1.98 16 12 C -0.12 -1.96 7.64 30.88 0.24 -1.73 16 13 C -0.09 -1.88 1.11 -52.31 -0.06 -1.93 16 14 C -0.14 -3.81 7.64 30.88 0.24 -3.57 16 15 C 0.14 5.17 4.48 45.63 0.20 5.38 16 16 N -0.73 -35.58 5.40 -319.93 -1.73 -37.31 16 17 C -0.24 -13.27 9.97 84.03 0.84 -12.43 16 18 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 21 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C -0.13 -3.65 7.59 30.89 0.23 -3.42 16 26 C -0.11 -1.51 7.59 30.89 0.23 -1.28 16 27 C -0.23 -4.92 9.53 22.62 0.22 -4.71 16 28 C 0.38 9.65 6.78 23.93 0.16 9.81 16 29 O -0.57 -20.93 17.71 8.94 0.16 -20.77 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 -0.09 7.66 -2.38 -0.02 -0.11 16 32 H 0.08 -0.10 7.66 -2.39 -0.02 -0.12 16 33 H 0.23 -1.61 6.21 -2.91 -0.02 -1.63 16 34 H 0.42 -0.61 6.94 -92.71 -0.64 -1.25 16 35 H 0.10 1.94 7.46 -2.39 -0.02 1.92 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.51 8.10 -2.38 -0.02 2.49 16 41 H 0.37 19.60 7.92 -92.71 -0.73 18.87 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.12 0.86 8.12 -2.39 -0.02 0.84 16 47 H 0.15 3.65 7.58 -2.91 -0.02 3.62 16 Total: -1.00 -90.55 393.13 1.58 -88.97 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.99 Total: 13.29 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 6.03 Total: -3.37 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -4.78 Total: -105.21 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.71 Total: -40.98 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -90.55 1.58 -88.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964339777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.631 kcal (2) G-P(sol) polarization free energy of solvation -90.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds