Wall clock time and date at job start Wed Apr 1 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36010 * 117.00428 * 2 1 4 4 C 1.35858 * 120.31122 * 0.02562 * 3 2 1 5 5 N 1.35438 * 120.77829 * 179.71992 * 4 3 2 6 6 H 0.97001 * 119.29293 * 180.26158 * 5 4 3 7 7 C 1.36423 * 121.41044 * 0.52636 * 5 4 3 8 8 C 1.48070 * 119.72211 * 179.75600 * 7 5 4 9 9 O 1.21511 * 120.00352 * 187.09187 * 8 7 5 10 10 N 1.34777 * 119.99487 * 7.08829 * 8 7 5 11 11 C 1.46899 * 125.62290 * 355.38344 * 10 8 7 12 12 C 1.54212 * 107.63642 * 178.50674 * 11 10 8 13 13 H 1.09003 * 113.72335 * 215.27903 * 12 11 10 14 14 C 1.54840 * 108.04732 * 87.00684 * 12 11 10 15 15 C 1.54590 * 104.63651 * 214.43722 * 14 12 11 16 16 C 1.53878 * 106.26675 * 24.64794 * 15 14 12 17 17 H 1.09002 * 109.91418 * 238.70525 * 16 15 14 18 18 N 1.46499 * 109.91732 * 117.60308 * 16 15 14 19 19 C 1.36930 * 120.00446 * 86.81456 * 18 16 15 20 20 H 1.08007 * 119.99790 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00185 * 179.97438 * 19 18 16 22 22 N 1.31613 * 119.99871 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99755 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46866 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47039 * 299.99555 * 23 21 19 26 26 H 1.48499 * 109.47444 * 59.99876 * 23 21 19 27 27 C 1.53705 * 107.20284 * 358.15300 * 16 15 14 28 28 H 1.09000 * 112.96520 * 214.98057 * 27 16 15 29 29 C 1.48448 * 125.24598 * 174.72986 * 10 8 7 30 30 C 1.36181 * 120.56140 * 359.47497 * 7 5 4 31 31 C 1.41576 * 120.32189 * 180.02562 * 3 2 1 32 32 O 1.22268 * 120.65008 * 0.02562 * 31 3 2 33 33 H 1.08996 * 109.47120 * 59.99938 * 1 2 3 34 34 H 1.08997 * 109.47175 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46817 * 300.00070 * 1 2 3 36 36 H 1.07999 * 119.61003 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.82231 * 58.97755 * 11 10 8 38 38 H 1.09005 * 109.89140 * 298.07077 * 11 10 8 39 39 H 1.08997 * 110.40328 * 333.32450 * 14 12 11 40 40 H 1.08990 * 110.40822 * 95.75674 * 14 12 11 41 41 H 1.08999 * 110.20060 * 265.44267 * 15 14 12 42 42 H 1.08998 * 110.11918 * 143.81038 * 15 14 12 43 43 H 0.97000 * 119.99946 * 266.80448 * 18 16 15 44 44 H 0.96997 * 120.00207 * 359.97438 * 22 21 19 45 45 H 1.09002 * 110.06538 * 84.94888 * 29 10 8 46 46 H 1.08995 * 111.04276 * 322.45691 * 29 10 8 47 47 H 1.08003 * 120.40868 * 180.27737 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3553 0.0005 5 7 1.9180 3.5670 0.0062 6 1 1.3732 4.3695 0.0103 7 6 3.2773 3.6829 0.0009 8 6 3.8995 5.0265 0.0020 9 8 5.1018 5.1395 -0.1326 10 7 3.1321 6.1243 0.1521 11 6 1.6651 6.1389 0.2278 12 6 1.2226 7.6013 0.4371 13 1 0.3462 7.7070 1.0764 14 6 1.0853 8.2649 -0.9552 15 6 1.5244 9.7306 -0.7343 16 6 2.4512 9.7225 0.4940 17 1 2.0476 10.3754 1.2680 18 7 3.7917 10.1724 0.1108 19 6 4.0909 11.5086 0.1084 20 1 3.3385 12.2309 0.3887 21 6 5.3612 11.9347 -0.2543 22 7 6.2782 11.0544 -0.5953 23 14 5.7696 13.7576 -0.2568 24 1 7.1804 13.9482 -0.6793 25 1 4.8701 14.4650 -1.2032 26 1 5.5827 14.3086 1.1095 27 6 2.5114 8.2754 1.0085 28 1 2.5849 8.2127 2.0942 29 6 3.6397 7.5132 0.2814 30 6 4.0669 2.5734 0.0004 31 6 3.4599 1.2937 -0.0005 32 8 4.1431 0.2797 -0.0015 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 0.2345 2.2973 0.0005 37 1 1.3322 5.5283 1.0669 38 1 1.2421 5.7540 -0.7002 39 1 1.7401 7.7750 -1.6758 40 1 0.0501 8.2270 -1.2938 41 1 0.6548 10.3591 -0.5422 42 1 2.0646 10.0958 -1.6077 43 1 4.4674 9.5236 -0.1412 44 1 6.0665 10.1078 -0.5930 45 1 3.8106 7.9424 -0.7059 46 1 4.5561 7.5417 0.8708 47 1 5.1427 2.6680 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026313747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:53 Heat of formation + Delta-G solvation = -16.592101 kcal Electronic energy + Delta-G solvation = -31012.319893 eV Core-core repulsion = 26776.920531 eV Total energy + Delta-G solvation = -4235.399362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.95036 -40.62643 -39.12773 -38.21749 -37.87812 -35.63472 -33.76322 -31.89068 -31.42746 -31.06554 -29.47627 -28.70239 -27.96183 -25.85298 -25.13439 -23.50203 -23.44570 -22.94549 -21.23004 -20.14651 -19.30504 -19.06581 -18.41632 -17.51011 -17.48817 -16.62862 -16.47520 -16.33227 -16.23462 -15.51397 -15.24632 -15.06735 -14.75035 -14.52222 -14.25974 -14.01554 -13.75581 -13.64801 -13.43077 -13.39136 -13.17701 -12.93272 -12.80120 -12.68291 -11.92313 -11.79985 -11.79238 -11.39083 -11.04037 -10.90588 -10.74327 -10.70744 -10.61643 -10.44284 -10.14662 -10.01345 -9.75725 -9.73868 -9.24936 -9.04889 -8.96540 -7.96679 -7.15309 -6.17116 -3.20006 0.40393 0.86642 2.20193 2.46452 2.56515 2.88662 3.44311 3.47091 3.49944 3.68261 3.73373 3.98158 4.04221 4.23469 4.33888 4.46798 4.59839 4.62711 4.67903 4.69850 4.73625 4.88398 5.03612 5.05902 5.15620 5.20373 5.41006 5.43660 5.48343 5.52764 5.58934 5.62397 5.66321 5.80929 5.86834 5.96232 6.05356 6.13429 6.22772 6.28339 6.34074 6.35985 6.55334 6.84089 6.84747 7.03874 7.63636 7.72771 7.77597 8.66720 9.11478 9.97763 10.10436 11.30111 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.002433 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.966551 B =11507.613184 C =12598.197018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.033 4.033 4 C 0.023 3.977 5 N -0.576 5.576 6 H 0.423 0.577 7 C 0.129 3.871 8 C 0.567 3.433 9 O -0.494 6.494 10 N -0.612 5.612 11 C 0.080 3.920 12 C -0.096 4.096 13 H 0.111 0.889 14 C -0.118 4.118 15 C -0.145 4.145 16 C 0.188 3.812 17 H 0.057 0.943 18 N -0.736 5.736 19 C -0.338 4.338 20 H 0.065 0.935 21 C -0.042 4.042 22 N -0.939 5.939 23 Si 1.079 2.921 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 C -0.107 4.107 28 H 0.092 0.908 29 C 0.117 3.883 30 C -0.213 4.213 31 C 0.401 3.599 32 O -0.497 6.497 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.369 0.631 44 H 0.255 0.745 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.024 -14.870 2.258 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.084 4.084 4 C -0.104 4.104 5 N -0.200 5.200 6 H 0.273 0.727 7 C 0.016 3.984 8 C 0.353 3.647 9 O -0.366 6.366 10 N -0.347 5.347 11 C -0.043 4.043 12 C -0.115 4.115 13 H 0.129 0.871 14 C -0.156 4.156 15 C -0.186 4.186 16 C 0.078 3.922 17 H 0.075 0.925 18 N -0.380 5.380 19 C -0.468 4.468 20 H 0.083 0.917 21 C -0.240 4.240 22 N -0.583 5.583 23 Si 0.910 3.090 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.222 1.222 27 C -0.127 4.127 28 H 0.111 0.889 29 C -0.003 4.003 30 C -0.240 4.240 31 C 0.290 3.710 32 O -0.380 6.380 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.186 0.814 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.205 0.795 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.784 -14.309 1.925 22.907 hybrid contribution -1.904 -0.787 0.197 2.070 sum -19.688 -15.096 2.121 24.901 Atomic orbital electron populations 1.23136 0.79169 1.04549 1.00903 1.86281 1.20321 1.24340 1.89027 1.20450 0.94833 0.84681 1.08460 1.21689 0.98794 0.84489 1.05428 1.42131 1.05562 1.09435 1.62888 0.72702 1.20367 0.83103 0.95443 0.99470 1.17586 0.86480 0.82056 0.78586 1.90913 1.13017 1.85024 1.47695 1.48819 1.06555 1.07827 1.71544 1.22333 0.81295 1.00236 1.00432 1.23166 0.98837 0.90779 0.98726 0.87096 1.22523 1.00792 0.97441 0.94820 1.23055 0.99635 0.94145 1.01731 1.20603 0.87332 0.90393 0.93922 0.92476 1.42707 1.08112 1.05456 1.81772 1.20006 0.98963 0.83590 1.44281 0.91687 1.25781 0.92036 1.06810 0.99395 1.70899 1.34949 1.01974 1.50519 0.83257 0.76130 0.73827 0.75824 1.21001 1.22268 1.22236 1.23282 0.92686 0.96837 0.99889 0.88946 1.22546 0.98105 0.77430 1.02235 1.22500 1.02386 0.90324 1.08804 1.16778 0.86116 0.89762 0.78312 1.90862 1.65715 1.37477 1.43981 0.92741 0.87858 0.92754 0.81394 0.90880 0.90594 0.91661 0.91911 0.92629 0.90624 0.79541 0.93354 0.89443 0.89344 0.81297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.17 10.33 -35.59 -0.37 -3.53 16 3 C -0.03 -0.37 6.71 -39.16 -0.26 -0.63 16 4 C 0.02 0.16 10.22 -16.81 -0.17 -0.01 16 5 N -0.58 -4.31 4.95 -9.58 -0.05 -4.36 16 6 H 0.42 2.15 3.14 -40.98 -0.13 2.03 16 7 C 0.13 1.45 6.72 -82.53 -0.55 0.90 16 8 C 0.57 7.75 7.81 -12.23 -0.10 7.65 16 9 O -0.49 -8.81 16.60 5.36 0.09 -8.72 16 10 N -0.61 -7.26 3.35 -171.35 -0.57 -7.83 16 11 C 0.08 0.60 4.27 -3.19 -0.01 0.58 16 12 C -0.10 -0.83 4.25 -87.26 -0.37 -1.20 16 13 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.12 -1.23 5.61 -24.93 -0.14 -1.37 16 15 C -0.14 -2.11 6.62 -25.44 -0.17 -2.28 16 16 C 0.19 3.15 3.23 -67.11 -0.22 2.94 16 17 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 18 N -0.74 -16.58 4.79 -52.63 -0.25 -16.83 16 19 C -0.34 -8.87 9.95 -15.06 -0.15 -9.02 16 20 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 21 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 22 N -0.94 -28.32 13.70 55.49 0.76 -27.56 16 23 Si 1.08 25.10 29.92 -169.99 -5.09 20.02 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 C -0.11 -1.38 3.97 -87.79 -0.35 -1.73 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 C 0.12 1.74 4.48 -2.25 -0.01 1.73 16 30 C -0.21 -2.82 9.53 -39.03 -0.37 -3.19 16 31 C 0.40 5.82 6.78 -37.02 -0.25 5.57 16 32 O -0.50 -9.17 17.71 -11.15 -0.20 -9.37 16 33 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 36 H 0.17 0.46 6.21 -52.49 -0.33 0.14 16 37 H 0.07 0.37 6.94 -51.93 -0.36 0.01 16 38 H 0.08 0.41 6.73 -51.93 -0.35 0.06 16 39 H 0.06 0.75 7.35 -51.93 -0.38 0.37 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.35 7.91 -51.93 -0.41 0.94 16 43 H 0.37 8.64 4.11 -40.82 -0.17 8.48 16 44 H 0.26 7.59 6.77 -40.82 -0.28 7.31 16 45 H 0.09 1.50 6.35 -51.93 -0.33 1.17 16 46 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 47 H 0.17 2.36 7.59 -52.48 -0.40 1.96 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -36.81 371.29 -8.40 -45.20 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.09 Total: 7.61 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.23 Total: -0.25 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.11 Total: -56.57 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.48 Total: -21.62 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.81 -8.40 -45.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026313747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.613 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds