Wall clock time and date at job start Wed Apr 1 2020 04:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00013 * 2 1 4 4 C 1.52990 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47222 * 65.00080 * 4 3 2 6 6 C 1.34599 * 119.48007 * 89.99783 * 5 4 3 7 7 C 1.37996 * 120.46450 * 179.97438 * 6 5 4 8 8 C 1.47448 * 120.26046 * 180.02562 * 7 6 5 9 9 O 1.21610 * 120.00154 * 255.42868 * 8 7 6 10 10 N 1.34775 * 120.00313 * 75.42796 * 8 7 6 11 11 C 1.47868 * 126.94317 * 4.91885 * 10 8 7 12 12 C 1.55964 * 105.13397 * 180.59689 * 11 10 8 13 13 H 1.08999 * 116.54381 * 160.11317 * 12 11 10 14 14 C 1.58982 * 98.67488 * 34.66662 * 12 11 10 15 15 C 1.49289 * 126.94686 * 185.22582 * 10 8 7 16 16 H 1.09003 * 116.15434 * 16.70131 * 15 10 8 17 17 C 1.56029 * 104.09315 * 247.56270 * 15 10 8 18 18 N 1.47864 * 105.10172 * 288.76833 * 17 15 10 19 19 C 1.36937 * 126.94338 * 182.02481 * 18 17 15 20 20 H 1.08002 * 120.00160 * 184.97535 * 19 18 17 21 21 C 1.38812 * 120.00330 * 4.96899 * 19 18 17 22 22 N 1.31618 * 119.99350 * 354.52371 * 21 19 18 23 23 Si 1.86791 * 120.00225 * 174.52119 * 21 19 18 24 24 H 1.48501 * 109.47234 * 94.99994 * 23 21 19 25 25 H 1.48503 * 109.47291 * 214.99839 * 23 21 19 26 26 H 1.48496 * 109.47339 * 334.99521 * 23 21 19 27 27 C 1.41594 * 119.47952 * 0.02562 * 7 6 5 28 28 C 1.35974 * 119.01651 * 359.97438 * 27 7 6 29 29 C 1.34537 * 119.48143 * 269.72697 * 5 4 3 30 30 O 1.21966 * 119.74386 * 359.97438 * 29 5 4 31 31 H 1.09005 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47068 * 299.99586 * 1 2 3 33 33 H 1.09000 * 109.47404 * 60.00040 * 1 2 3 34 34 H 1.09001 * 109.46738 * 60.00112 * 3 2 1 35 35 H 1.08999 * 109.46971 * 300.00646 * 3 2 1 36 36 H 1.08999 * 109.47478 * 184.99888 * 4 3 2 37 37 H 1.09003 * 109.47413 * 305.00153 * 4 3 2 38 38 H 1.08004 * 119.76415 * 0.02562 * 6 5 4 39 39 H 1.09005 * 110.31137 * 300.90107 * 11 10 8 40 40 H 1.08997 * 110.31934 * 63.09033 * 11 10 8 41 41 H 1.09007 * 112.07477 * 190.72418 * 14 12 11 42 42 H 1.08992 * 113.30692 * 62.74023 * 14 12 11 43 43 H 1.09000 * 110.31485 * 47.66988 * 17 15 10 44 44 H 1.08991 * 110.31741 * 169.86126 * 17 15 10 45 45 H 0.97005 * 119.99722 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.49371 * 179.97438 * 27 7 6 47 47 H 1.07995 * 120.25681 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2582 1.3428 -2.3139 7 6 4.6751 0.7801 -3.5030 8 6 4.9840 1.6370 -4.6625 9 8 4.2024 1.7083 -5.5914 10 7 6.1327 2.3413 -4.6929 11 6 7.2312 2.2931 -3.7042 12 6 8.2912 3.3126 -4.2233 13 1 9.0129 3.6790 -3.4932 14 6 7.3023 4.3914 -4.8444 15 6 6.5503 3.3326 -5.7281 16 1 5.7603 3.7125 -6.3759 17 6 7.7591 2.6508 -6.4412 18 7 8.8596 2.6881 -5.4544 19 6 10.1413 2.2407 -5.6336 20 1 10.8369 2.2493 -4.8074 21 6 10.5468 1.7759 -6.8772 22 7 9.6726 1.6638 -7.8547 23 14 12.3328 1.3098 -7.1633 24 1 12.5024 -0.1509 -6.9563 25 1 12.7195 1.6609 -8.5534 26 1 13.1965 2.0487 -6.2077 27 6 4.8037 -0.6266 -3.6009 28 6 4.5126 -1.3926 -2.5159 29 6 4.0963 -0.7737 -1.3222 30 8 3.8392 -1.4559 -0.3444 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.9785 2.1765 0.0889 37 1 3.8514 0.5682 0.8409 38 1 4.1589 2.4153 -2.2338 39 1 6.8631 2.5683 -2.7158 40 1 7.6752 1.2979 -3.6800 41 1 7.8296 5.1331 -5.4444 42 1 6.6487 4.8536 -4.1047 43 1 7.5151 1.6197 -6.6970 44 1 8.0343 3.2086 -7.3362 45 1 9.9558 1.3387 -8.7237 46 1 5.1282 -1.0843 -4.5237 47 1 4.6035 -2.4675 -2.5684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032496431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:21 Heat of formation + Delta-G solvation = -6.896323 kcal Electronic energy + Delta-G solvation = -31281.457246 eV Core-core repulsion = 27046.478324 eV Total energy + Delta-G solvation = -4234.978922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.56346 -40.01739 -38.19963 -37.90933 -36.66293 -34.81574 -33.67020 -31.66724 -30.56240 -29.99506 -28.90835 -28.52174 -26.73783 -25.27541 -24.86183 -24.20952 -23.34641 -22.40860 -20.84541 -19.97271 -18.85704 -17.90082 -17.73446 -16.95485 -16.75705 -16.50983 -16.34378 -16.19250 -15.80151 -15.38440 -14.95825 -14.61553 -14.42445 -14.28532 -14.00928 -13.52942 -13.27689 -13.09034 -13.02505 -12.80315 -12.35235 -12.27684 -12.07609 -11.97241 -11.85112 -11.67290 -11.47153 -11.35278 -11.05977 -10.88566 -10.82199 -10.63267 -10.30269 -10.23259 -10.12353 -10.08223 -9.89633 -9.70352 -9.65239 -8.73156 -8.10810 -7.97104 -6.98267 -5.82140 -3.16379 0.74351 1.65323 2.35650 2.89377 3.29175 3.34857 3.38187 3.40223 3.42628 3.64903 4.28761 4.38053 4.43435 4.52940 4.68648 4.74245 4.85011 4.88723 4.91951 5.03296 5.04707 5.10513 5.12709 5.23054 5.30489 5.37438 5.39671 5.49056 5.55494 5.70125 5.82036 5.87257 5.91201 6.09441 6.16076 6.23043 6.33383 6.35497 6.42763 6.52357 6.63828 6.78424 6.93213 7.38986 7.42961 7.67820 7.97179 8.00474 8.05642 8.45264 9.05334 9.66426 10.34986 11.29977 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.002697 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.160740 B =10380.518456 C =10791.167020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.043 3.957 4 C 0.090 3.910 5 N -0.486 5.486 6 C 0.163 3.837 7 C -0.217 4.217 8 C 0.587 3.413 9 O -0.544 6.544 10 N -0.598 5.598 11 C 0.085 3.915 12 C 0.143 3.857 13 H 0.106 0.894 14 C -0.154 4.154 15 C 0.098 3.902 16 H 0.113 0.887 17 C 0.173 3.827 18 N -0.594 5.594 19 C -0.234 4.234 20 H 0.081 0.919 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.014 3.986 28 C -0.241 4.241 29 C 0.520 3.480 30 O -0.533 6.533 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.163 0.837 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.254 0.746 46 H 0.139 0.861 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 3.975 15.272 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C -0.035 4.035 4 C -0.031 4.031 5 N -0.196 5.196 6 C 0.032 3.968 7 C -0.226 4.226 8 C 0.373 3.627 9 O -0.422 6.422 10 N -0.331 5.331 11 C -0.041 4.041 12 C 0.033 3.967 13 H 0.124 0.876 14 C -0.194 4.194 15 C -0.004 4.004 16 H 0.131 0.869 17 C 0.048 3.952 18 N -0.318 5.318 19 C -0.362 4.362 20 H 0.099 0.901 21 C -0.201 4.201 22 N -0.563 5.563 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.008 4.008 28 C -0.262 4.262 29 C 0.322 3.678 30 O -0.414 6.414 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.181 0.819 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.156 0.844 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.435 3.214 15.247 21.241 hybrid contribution 0.691 -0.111 -0.392 0.802 sum -13.744 3.103 14.855 20.474 Atomic orbital electron populations 1.22754 0.81094 1.02999 0.99699 1.88123 1.19474 1.26090 1.95291 1.22919 0.92987 0.86353 1.01217 1.22105 0.93826 1.00140 0.87076 1.45126 1.54137 1.08597 1.11750 1.21930 0.92438 0.96952 0.85438 1.19432 1.13803 0.94770 0.94554 1.17324 0.80564 0.79110 0.85669 1.90794 1.48915 1.65126 1.37355 1.49248 1.16622 1.40737 1.26507 1.23279 0.88107 1.02583 0.90099 1.23424 0.91782 0.90481 0.90982 0.87584 1.24494 0.98570 0.96965 0.99377 1.24384 0.96806 0.88608 0.90635 0.86917 1.21946 0.83215 0.98753 0.91270 1.45175 1.08015 1.69696 1.08917 1.19027 0.85607 1.36149 0.95389 0.90137 1.24839 0.97982 1.01281 0.95964 1.69922 1.32230 1.51192 1.02948 0.86118 0.84243 0.78114 0.77352 1.21641 1.21621 1.20557 1.21350 0.89391 0.91377 0.98682 1.22005 1.09941 1.01633 0.92656 1.17106 0.79917 0.80329 0.90454 1.90930 1.51647 1.60803 1.38012 0.89497 0.94123 0.94177 0.91432 0.92749 0.87321 0.86926 0.81943 0.92848 0.91177 0.89803 0.91508 0.93583 0.92290 0.93522 0.84355 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.25 9.46 -43.77 -0.41 -4.67 16 3 C 0.04 0.34 6.28 37.15 0.23 0.57 16 4 C 0.09 0.72 5.77 -4.05 -0.02 0.69 16 5 N -0.49 -5.43 2.54 -119.31 -0.30 -5.74 16 6 C 0.16 1.74 10.02 -16.43 -0.16 1.58 16 7 C -0.22 -3.01 4.91 -104.96 -0.52 -3.53 16 8 C 0.59 9.97 7.29 -12.51 -0.09 9.88 16 9 O -0.54 -11.13 17.48 5.27 0.09 -11.03 16 10 N -0.60 -10.07 2.94 -158.05 -0.46 -10.53 16 11 C 0.08 1.32 6.01 -1.71 -0.01 1.31 16 12 C 0.14 2.45 5.55 -61.47 -0.34 2.10 16 13 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 14 C -0.15 -2.35 6.93 -21.19 -0.15 -2.50 16 15 C 0.10 1.75 5.17 -62.55 -0.32 1.43 16 16 H 0.11 1.96 8.09 -51.93 -0.42 1.54 16 17 C 0.17 3.97 4.81 -1.67 -0.01 3.96 16 18 N -0.59 -13.65 3.06 -155.17 -0.48 -14.13 16 19 C -0.23 -6.03 10.37 -15.06 -0.16 -6.19 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 22 N -0.92 -26.09 10.59 55.49 0.59 -25.50 16 23 Si 0.91 21.28 29.56 -169.99 -5.02 16.26 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.01 0.19 9.86 -39.12 -0.39 -0.20 16 28 C -0.24 -3.28 9.97 -39.44 -0.39 -3.67 16 29 C 0.52 7.50 7.02 -15.41 -0.11 7.39 16 30 O -0.53 -9.19 15.77 -3.59 -0.06 -9.25 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.45 8.00 -51.93 -0.42 0.03 16 37 H 0.11 1.05 7.36 -51.93 -0.38 0.66 16 38 H 0.16 1.22 8.02 -52.48 -0.42 0.80 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.33 8.14 -51.92 -0.42 0.90 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 44 H 0.06 1.50 7.34 -51.93 -0.38 1.12 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 47 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -35.25 389.43 -8.65 -43.90 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.04 Total: 0.81 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -1.42 Total: 14.01 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.65 Total: -55.90 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.38 Total: -24.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.25 -8.65 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032496431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.999 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds