Wall clock time and date at job start Wed Apr 1 2020 04:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36010 * 117.00252 * 2 1 4 4 C 1.35863 * 120.31103 * 359.97438 * 3 2 1 5 5 N 1.35442 * 120.77746 * 179.97438 * 4 3 2 6 6 H 0.96995 * 119.29637 * 180.02562 * 5 4 3 7 7 C 1.36428 * 121.40743 * 359.97438 * 5 4 3 8 8 C 1.48076 * 119.71530 * 179.97438 * 7 5 4 9 9 O 1.21517 * 119.99725 * 210.03739 * 8 7 5 10 10 N 1.34777 * 119.99945 * 30.04130 * 8 7 5 11 11 C 1.46595 * 119.68372 * 359.21635 * 10 8 7 12 12 C 1.53955 * 110.57538 * 132.19462 * 11 10 8 13 13 C 1.51516 * 107.34503 * 51.05482 * 12 11 10 14 14 H 1.08995 * 108.80774 * 53.43643 * 13 12 11 15 15 C 1.55099 * 107.76745 * 295.29335 * 13 12 11 16 16 H 1.08997 * 111.33656 * 308.99781 * 15 13 12 17 17 C 1.53739 * 100.31943 * 191.11849 * 15 13 12 18 18 C 1.55289 * 101.84417 * 38.94774 * 17 15 13 19 19 N 1.45468 * 117.34574 * 178.09465 * 13 12 11 20 20 C 1.36934 * 126.40681 * 329.40263 * 19 13 12 21 21 H 1.08008 * 119.99563 * 18.69852 * 20 19 13 22 22 C 1.38812 * 120.00600 * 198.69564 * 20 19 13 23 23 N 1.31621 * 120.00251 * 186.01451 * 22 20 19 24 24 Si 1.86802 * 119.99691 * 6.00900 * 22 20 19 25 25 H 1.48498 * 109.46938 * 179.97438 * 24 22 20 26 26 H 1.48507 * 109.46850 * 60.00484 * 24 22 20 27 27 H 1.48495 * 109.47170 * 300.00431 * 24 22 20 28 28 C 1.48164 * 119.16546 * 179.01832 * 10 8 7 29 29 C 1.36177 * 120.56559 * 0.26209 * 7 5 4 30 30 C 1.41573 * 120.32001 * 179.97438 * 3 2 1 31 31 O 1.22267 * 120.65039 * 0.02562 * 30 3 2 32 32 H 1.08998 * 109.47147 * 60.00498 * 1 2 3 33 33 H 1.08995 * 109.46714 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47028 * 299.99998 * 1 2 3 35 35 H 1.07999 * 119.60959 * 359.96437 * 4 3 2 36 36 H 1.09003 * 109.25376 * 11.91342 * 11 10 8 37 37 H 1.09001 * 109.22358 * 252.46383 * 11 10 8 38 38 H 1.08996 * 109.88145 * 291.59043 * 12 11 10 39 39 H 1.09001 * 109.87964 * 170.51303 * 12 11 10 40 40 H 1.09001 * 110.95635 * 280.80729 * 17 15 13 41 41 H 1.09008 * 110.95160 * 157.08621 * 17 15 13 42 42 H 1.09004 * 109.91799 * 218.16745 * 18 17 15 43 43 H 1.09007 * 110.08368 * 96.96083 * 18 17 15 44 44 H 0.96998 * 119.99786 * 5.14658 * 23 22 20 45 45 H 1.09002 * 110.13663 * 112.33051 * 28 10 8 46 46 H 1.09000 * 110.41436 * 350.47395 * 28 10 8 47 47 H 1.07995 * 120.40721 * 179.72242 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3128 2.3553 -0.0005 5 7 1.9179 3.5670 0.0000 6 1 1.3732 4.3696 0.0000 7 6 3.2773 3.6829 0.0016 8 6 3.8994 5.0266 0.0015 9 8 4.9820 5.1948 -0.5241 10 7 3.2649 6.0630 0.5844 11 6 1.9513 5.8559 1.2014 12 6 1.9093 6.4814 2.6075 13 6 2.3972 7.9103 2.4810 14 1 1.8126 8.4144 1.7116 15 6 3.8836 7.8655 2.0403 16 1 4.4679 7.2060 2.6820 17 6 4.2765 9.3375 2.2467 18 6 3.5220 9.6879 3.5580 19 7 2.4053 8.7229 3.6875 20 6 1.5452 8.6128 4.7473 21 1 0.9754 7.7061 4.8884 22 6 1.4055 9.6663 5.6403 23 7 0.6711 9.5188 6.7226 24 14 2.2601 11.2935 5.3061 25 1 1.9536 12.2477 6.4019 26 1 1.7779 11.8500 4.0165 27 1 3.7273 11.0764 5.2340 28 6 3.9142 7.3948 0.5929 29 6 4.0668 2.5734 -0.0027 30 6 3.4599 1.2938 0.0005 31 8 4.1430 0.2797 0.0006 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2344 2.2973 -0.0015 36 1 1.7547 4.7865 1.2777 37 1 1.1855 6.3186 0.5789 38 1 2.5618 5.9250 3.2804 39 1 0.8877 6.4708 2.9875 40 1 3.9265 9.9542 1.4189 41 1 5.3539 9.4386 2.3780 42 1 3.1305 10.7036 3.5011 43 1 4.1931 9.5961 4.4120 44 1 0.2887 8.6530 6.9348 45 1 3.3572 8.0878 -0.0377 46 1 4.9448 7.3175 0.2464 47 1 5.1426 2.6681 -0.0059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036771284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:29 Heat of formation + Delta-G solvation = 8.466308 kcal Electronic energy + Delta-G solvation = -31349.876038 eV Core-core repulsion = 27115.563290 eV Total energy + Delta-G solvation = -4234.312748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.05651 -40.45147 -38.99116 -38.28617 -37.94152 -35.99848 -33.10189 -32.03394 -31.91832 -31.41734 -30.29818 -28.63347 -27.91689 -25.97083 -24.28463 -23.70659 -23.17629 -22.89101 -21.13918 -20.76384 -19.80949 -19.11798 -18.40028 -17.69198 -17.12648 -16.70991 -16.57427 -16.26530 -15.80761 -15.65281 -15.29655 -15.09284 -14.80507 -14.54301 -14.48642 -14.20746 -13.95205 -13.60645 -13.49665 -13.22720 -13.09072 -13.01225 -12.99107 -12.32022 -12.11403 -11.90692 -11.77121 -11.59903 -11.29385 -11.15348 -11.00176 -10.76319 -10.52873 -10.12456 -10.01297 -9.78984 -9.74130 -9.29933 -9.19545 -9.01288 -8.84845 -7.96938 -7.13749 -6.42121 -3.40759 0.41352 0.85556 2.12085 2.25518 2.62962 2.89806 3.33639 3.39332 3.39937 3.62109 3.69920 4.07380 4.31111 4.35871 4.49297 4.52272 4.60773 4.72259 4.74777 4.76366 4.90747 4.96947 5.05676 5.09155 5.17598 5.27162 5.30673 5.39864 5.44955 5.55325 5.66352 5.70864 5.78321 5.81954 5.84032 5.93871 6.09226 6.18273 6.24964 6.29128 6.31936 6.41750 6.63270 6.69904 6.84048 6.87793 7.55564 7.58104 7.75292 8.20156 8.89329 9.44200 10.11786 11.08250 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.002793 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.366498 B =10024.259501 C =11183.533785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.030 4.030 4 C 0.021 3.979 5 N -0.569 5.569 6 H 0.429 0.571 7 C 0.129 3.871 8 C 0.554 3.446 9 O -0.508 6.508 10 N -0.598 5.598 11 C 0.072 3.928 12 C -0.125 4.125 13 C 0.169 3.831 14 H 0.026 0.974 15 C -0.129 4.129 16 H 0.085 0.915 17 C -0.119 4.119 18 C 0.106 3.894 19 N -0.602 5.602 20 C -0.323 4.323 21 H 0.076 0.924 22 C -0.018 4.018 23 N -0.929 5.929 24 Si 1.073 2.927 25 H -0.302 1.302 26 H -0.297 1.297 27 H -0.284 1.284 28 C 0.128 3.872 29 C -0.215 4.215 30 C 0.401 3.599 31 O -0.496 6.496 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.171 0.829 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.050 0.950 44 H 0.261 0.739 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -9.841 -16.277 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.199 6.199 3 C -0.081 4.081 4 C -0.106 4.106 5 N -0.190 5.190 6 H 0.275 0.725 7 C 0.017 3.983 8 C 0.339 3.661 9 O -0.383 6.383 10 N -0.332 5.332 11 C -0.052 4.052 12 C -0.165 4.165 13 C 0.060 3.940 14 H 0.043 0.957 15 C -0.149 4.149 16 H 0.103 0.897 17 C -0.157 4.157 18 C -0.018 4.018 19 N -0.328 5.328 20 C -0.450 4.450 21 H 0.094 0.906 22 C -0.218 4.218 23 N -0.570 5.570 24 Si 0.907 3.093 25 H -0.230 1.230 26 H -0.225 1.225 27 H -0.211 1.211 28 C 0.007 3.993 29 C -0.242 4.242 30 C 0.291 3.709 31 O -0.379 6.379 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.188 0.812 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.307 -8.956 -15.892 18.244 hybrid contribution -1.048 -1.038 -0.431 1.537 sum -1.355 -9.993 -16.322 19.187 Atomic orbital electron populations 1.23154 0.79005 1.04620 1.01032 1.86280 1.20454 1.24271 1.88940 1.20435 0.94793 0.84728 1.08125 1.21735 0.98962 0.84354 1.05523 1.41952 1.05318 1.09013 1.62754 0.72499 1.20329 0.83012 0.95732 0.99222 1.18048 0.85357 0.82824 0.79831 1.90850 1.19839 1.82912 1.44650 1.48467 1.19940 1.09743 1.55001 1.22650 0.83788 1.02183 0.96544 1.21825 1.03446 0.97600 0.93585 1.20527 0.92422 0.90794 0.90221 0.95670 1.22669 0.99723 0.97355 0.95168 0.89667 1.22417 1.00095 0.94831 0.98405 1.22471 0.90025 0.93603 0.95684 1.44471 1.32933 1.38152 1.17278 1.20094 1.19953 1.01970 1.02951 0.90584 1.25964 0.98860 1.02229 0.94731 1.70905 1.34424 1.26255 1.25383 0.83813 0.75658 0.75988 0.73856 1.23003 1.22523 1.21113 1.21818 0.99340 0.80933 0.97169 1.22418 1.02064 0.90403 1.09333 1.16781 0.86155 0.89760 0.78219 1.90863 1.65720 1.37512 1.43844 0.92720 0.87829 0.92553 0.81186 0.88617 0.90377 0.91018 0.89793 0.91210 0.90986 0.94935 0.93183 0.92852 0.90366 0.88275 0.81606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.29 -3.22 10.33 -35.60 -0.37 -3.59 16 3 C -0.03 -0.33 6.71 -39.16 -0.26 -0.59 16 4 C 0.02 0.15 10.22 -16.81 -0.17 -0.03 16 5 N -0.57 -4.07 3.78 -9.57 -0.04 -4.11 16 6 H 0.43 2.06 5.38 -40.82 -0.22 1.85 16 7 C 0.13 1.33 6.18 -82.53 -0.51 0.82 16 8 C 0.55 6.52 7.50 -12.22 -0.09 6.42 16 9 O -0.51 -7.46 15.97 5.35 0.09 -7.38 16 10 N -0.60 -6.41 3.01 -173.15 -0.52 -6.93 16 11 C 0.07 0.66 4.76 -3.49 -0.02 0.64 16 12 C -0.13 -1.73 5.40 -26.98 -0.15 -1.88 16 13 C 0.17 2.80 2.58 -68.13 -0.18 2.63 16 14 H 0.03 0.43 7.96 -51.93 -0.41 0.01 16 15 C -0.13 -1.82 2.79 -89.51 -0.25 -2.07 16 16 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 17 C -0.12 -1.73 6.53 -25.13 -0.16 -1.89 16 18 C 0.11 2.10 4.66 -1.92 -0.01 2.09 16 19 N -0.60 -13.19 3.23 -163.26 -0.53 -13.71 16 20 C -0.32 -8.46 10.22 -15.06 -0.15 -8.61 16 21 H 0.08 2.08 7.46 -52.48 -0.39 1.69 16 22 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 23 N -0.93 -27.97 13.70 55.49 0.76 -27.21 16 24 Si 1.07 25.53 24.60 -169.99 -4.18 21.35 16 25 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.30 -6.78 6.86 56.52 0.39 -6.40 16 27 H -0.28 -6.14 5.31 56.52 0.30 -5.84 16 28 C 0.13 1.46 6.01 -3.51 -0.02 1.44 16 29 C -0.22 -2.66 9.52 -39.03 -0.37 -3.03 16 30 C 0.40 5.68 6.78 -37.02 -0.25 5.43 16 31 O -0.50 -8.98 17.71 -11.15 -0.20 -9.18 16 32 H 0.05 0.20 7.66 -51.93 -0.40 -0.19 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 35 H 0.17 0.54 6.21 -52.49 -0.33 0.22 16 36 H 0.10 0.70 4.12 -54.61 -0.22 0.48 16 37 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 38 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 39 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 40 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 41 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.03 0.68 4.03 -51.93 -0.21 0.47 16 43 H 0.05 1.05 6.75 -51.92 -0.35 0.70 16 44 H 0.26 7.76 8.73 -40.82 -0.36 7.40 16 45 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.10 1.16 7.00 -51.93 -0.36 0.79 16 47 H 0.17 2.10 7.86 -52.49 -0.41 1.68 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -36.36 362.11 -7.55 -43.91 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.32 Total: -0.48 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.70 Total: 1.87 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.32 Total: -51.97 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.48 Total: -20.14 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.18 Total: 21.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.36 -7.55 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036771284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.374 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds