Wall clock time and date at job start Wed Apr 1 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36010 * 117.00252 * 2 1 4 4 C 1.35863 * 120.31103 * 359.97438 * 3 2 1 5 5 N 1.35442 * 120.77746 * 179.97438 * 4 3 2 6 6 H 0.96995 * 119.29637 * 180.02562 * 5 4 3 7 7 C 1.36428 * 121.40743 * 359.97438 * 5 4 3 8 8 C 1.48076 * 119.71530 * 179.97438 * 7 5 4 9 9 O 1.21517 * 119.99725 * 210.03739 * 8 7 5 10 10 N 1.34777 * 119.99945 * 30.04130 * 8 7 5 11 11 C 1.46595 * 119.68372 * 359.21635 * 10 8 7 12 12 C 1.53955 * 110.57538 * 132.19462 * 11 10 8 13 13 C 1.51516 * 107.34503 * 51.05482 * 12 11 10 14 14 H 1.08995 * 108.80774 * 53.43643 * 13 12 11 15 15 C 1.55099 * 107.76745 * 295.29335 * 13 12 11 16 16 H 1.08997 * 111.33656 * 308.99781 * 15 13 12 17 17 C 1.53739 * 100.31943 * 191.11849 * 15 13 12 18 18 C 1.55289 * 101.84417 * 38.94774 * 17 15 13 19 19 N 1.45468 * 117.34574 * 178.09465 * 13 12 11 20 20 C 1.36934 * 126.40681 * 329.40263 * 19 13 12 21 21 H 1.08008 * 119.99563 * 18.69852 * 20 19 13 22 22 C 1.38812 * 120.00600 * 198.69564 * 20 19 13 23 23 N 1.31621 * 120.00251 * 186.01451 * 22 20 19 24 24 Si 1.86802 * 119.99691 * 6.00900 * 22 20 19 25 25 H 1.48498 * 109.46938 * 179.97438 * 24 22 20 26 26 H 1.48507 * 109.46850 * 60.00484 * 24 22 20 27 27 H 1.48495 * 109.47170 * 300.00431 * 24 22 20 28 28 C 1.48164 * 119.16546 * 179.01832 * 10 8 7 29 29 C 1.36177 * 120.56559 * 0.26209 * 7 5 4 30 30 C 1.41573 * 120.32001 * 179.97438 * 3 2 1 31 31 O 1.22267 * 120.65039 * 0.02562 * 30 3 2 32 32 H 1.08998 * 109.47147 * 60.00498 * 1 2 3 33 33 H 1.08995 * 109.46714 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47028 * 299.99998 * 1 2 3 35 35 H 1.07999 * 119.60959 * 359.96437 * 4 3 2 36 36 H 1.09003 * 109.25376 * 11.91342 * 11 10 8 37 37 H 1.09001 * 109.22358 * 252.46383 * 11 10 8 38 38 H 1.08996 * 109.88145 * 291.59043 * 12 11 10 39 39 H 1.09001 * 109.87964 * 170.51303 * 12 11 10 40 40 H 1.09001 * 110.95635 * 280.80729 * 17 15 13 41 41 H 1.09008 * 110.95160 * 157.08621 * 17 15 13 42 42 H 1.09004 * 109.91799 * 218.16745 * 18 17 15 43 43 H 1.09007 * 110.08368 * 96.96083 * 18 17 15 44 44 H 0.96998 * 119.99786 * 5.14658 * 23 22 20 45 45 H 1.09002 * 110.13663 * 112.33051 * 28 10 8 46 46 H 1.09000 * 110.41436 * 350.47395 * 28 10 8 47 47 H 1.07995 * 120.40721 * 179.72242 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3128 2.3553 -0.0005 5 7 1.9179 3.5670 0.0000 6 1 1.3732 4.3696 0.0000 7 6 3.2773 3.6829 0.0016 8 6 3.8994 5.0266 0.0015 9 8 4.9820 5.1948 -0.5241 10 7 3.2649 6.0630 0.5844 11 6 1.9513 5.8559 1.2014 12 6 1.9093 6.4814 2.6075 13 6 2.3972 7.9103 2.4810 14 1 1.8126 8.4144 1.7116 15 6 3.8836 7.8655 2.0403 16 1 4.4679 7.2060 2.6820 17 6 4.2765 9.3375 2.2467 18 6 3.5220 9.6879 3.5580 19 7 2.4053 8.7229 3.6875 20 6 1.5452 8.6128 4.7473 21 1 0.9754 7.7061 4.8884 22 6 1.4055 9.6663 5.6403 23 7 0.6711 9.5188 6.7226 24 14 2.2601 11.2935 5.3061 25 1 1.9536 12.2477 6.4019 26 1 1.7779 11.8500 4.0165 27 1 3.7273 11.0764 5.2340 28 6 3.9142 7.3948 0.5929 29 6 4.0668 2.5734 -0.0027 30 6 3.4599 1.2938 0.0005 31 8 4.1430 0.2797 0.0006 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2344 2.2973 -0.0015 36 1 1.7547 4.7865 1.2777 37 1 1.1855 6.3186 0.5789 38 1 2.5618 5.9250 3.2804 39 1 0.8877 6.4708 2.9875 40 1 3.9265 9.9542 1.4189 41 1 5.3539 9.4386 2.3780 42 1 3.1305 10.7036 3.5011 43 1 4.1931 9.5961 4.4120 44 1 0.2887 8.6530 6.9348 45 1 3.3572 8.0878 -0.0377 46 1 4.9448 7.3175 0.2464 47 1 5.1426 2.6681 -0.0059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036771284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:28 Heat of formation + Delta-G solvation = -18.588344 kcal Electronic energy + Delta-G solvation = -31351.049215 eV Core-core repulsion = 27115.563290 eV Total energy + Delta-G solvation = -4235.485926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.93500 -41.41660 -40.12164 -39.11690 -38.90895 -37.18516 -34.82478 -33.23732 -32.88494 -32.55207 -31.55736 -29.82712 -28.44533 -27.13017 -25.71539 -24.72693 -24.14181 -24.00114 -22.24317 -22.05375 -21.04077 -19.94616 -19.49876 -19.05324 -18.31154 -17.60972 -17.44573 -17.06931 -17.02170 -16.73413 -16.53170 -16.19293 -15.74613 -15.61415 -15.39006 -15.29786 -15.00040 -14.79472 -14.73361 -14.53330 -14.33151 -14.13976 -13.91320 -13.52791 -13.46463 -12.96884 -12.68231 -12.51696 -12.36694 -12.31685 -12.24976 -12.22329 -11.62503 -11.57172 -11.29482 -11.16848 -10.98228 -10.77562 -10.67635 -10.58526 -9.98019 -9.00857 -8.81589 -8.58964 -5.48207 -0.51881 0.07575 1.28966 1.30448 1.43008 1.50531 1.72341 1.79035 2.27127 2.48457 2.57603 2.84681 3.11636 3.24243 3.48094 3.49950 3.61378 3.66721 3.79571 3.83897 3.93630 3.97228 4.23156 4.30215 4.31827 4.38090 4.39619 4.45570 4.48520 4.55138 4.58199 4.69993 4.74464 4.80363 4.82948 4.85000 4.95113 4.96570 5.09394 5.25176 5.29472 5.37229 5.47184 5.65871 5.68255 5.94895 6.15311 6.22958 6.62665 6.83643 6.85757 7.50879 8.17015 8.93722 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.002793 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.366498 B =10024.259501 C =11183.533785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.324 6.324 3 C -0.058 4.058 4 C 0.064 3.936 5 N -0.542 5.542 6 H 0.447 0.553 7 C 0.145 3.855 8 C 0.560 3.440 9 O -0.538 6.538 10 N -0.594 5.594 11 C 0.080 3.920 12 C -0.123 4.123 13 C 0.153 3.847 14 H 0.042 0.958 15 C -0.116 4.116 16 H 0.065 0.935 17 C -0.107 4.107 18 C 0.093 3.907 19 N -0.625 5.625 20 C -0.295 4.295 21 H 0.053 0.947 22 C -0.082 4.082 23 N -0.973 5.973 24 Si 1.108 2.892 25 H -0.321 1.321 26 H -0.279 1.279 27 H -0.254 1.254 28 C 0.134 3.866 29 C -0.234 4.234 30 C 0.379 3.621 31 O -0.567 6.567 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.226 0.774 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.029 0.971 43 H 0.030 0.970 44 H 0.247 0.753 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -8.494 -19.352 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.237 6.237 3 C -0.108 4.108 4 C -0.064 4.064 5 N -0.163 5.163 6 H 0.297 0.703 7 C 0.031 3.969 8 C 0.345 3.655 9 O -0.414 6.414 10 N -0.325 5.325 11 C -0.043 4.043 12 C -0.162 4.162 13 C 0.046 3.954 14 H 0.060 0.940 15 C -0.136 4.136 16 H 0.083 0.917 17 C -0.145 4.145 18 C -0.031 4.031 19 N -0.352 5.352 20 C -0.424 4.424 21 H 0.071 0.929 22 C -0.274 4.274 23 N -0.618 5.618 24 Si 0.937 3.063 25 H -0.251 1.251 26 H -0.207 1.207 27 H -0.180 1.180 28 C 0.014 3.986 29 C -0.261 4.261 30 C 0.275 3.725 31 O -0.457 6.457 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.242 0.758 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.777 -7.581 -19.023 20.555 hybrid contribution -0.712 -1.454 0.526 1.702 sum -2.490 -9.035 -18.497 20.735 Atomic orbital electron populations 1.23519 0.76223 1.06095 1.03073 1.86237 1.23403 1.24619 1.89402 1.20193 0.93695 0.86328 1.10588 1.22360 1.00778 0.82521 1.00717 1.42088 1.04297 1.10169 1.59776 0.70340 1.20033 0.84106 0.94434 0.98316 1.18061 0.84851 0.83042 0.79540 1.90851 1.21137 1.83285 1.46110 1.48487 1.20288 1.09367 1.54407 1.22754 0.83987 1.03347 0.94191 1.21743 1.02087 0.96117 0.96277 1.20888 0.94669 0.91483 0.88321 0.94020 1.22521 0.97275 0.97095 0.96730 0.91663 1.22418 1.00783 0.95078 0.96229 1.22598 0.89522 0.92966 0.98046 1.44603 1.33045 1.39581 1.17923 1.20015 1.18722 1.00314 1.03347 0.92925 1.27100 0.99944 1.05598 0.94804 1.71006 1.37577 1.25603 1.27607 0.83429 0.76759 0.72440 0.73707 1.25070 1.20664 1.17958 1.21821 1.00238 0.81369 0.95221 1.22227 1.01897 0.90789 1.11187 1.17287 0.87958 0.89458 0.77801 1.90816 1.67221 1.39173 1.48465 0.90206 0.87078 0.90599 0.75801 0.86785 0.86107 0.93378 0.90790 0.88450 0.88845 0.95349 0.95151 0.94384 0.87544 0.88185 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -6.94 10.33 -78.54 -0.81 -7.75 16 3 C -0.06 -1.20 6.71 22.54 0.15 -1.05 16 4 C 0.06 0.61 10.22 83.58 0.85 1.46 16 5 N -0.54 -5.13 3.78 -184.20 -0.70 -5.83 16 6 H 0.45 1.32 5.38 -92.71 -0.50 0.82 16 7 C 0.15 2.63 6.18 40.56 0.25 2.89 16 8 C 0.56 11.45 7.50 86.85 0.65 12.10 16 9 O -0.54 -14.73 15.97 -3.77 -0.06 -14.79 16 10 N -0.59 -10.13 3.01 -820.00 -2.47 -12.59 16 11 C 0.08 1.05 4.76 86.68 0.41 1.47 16 12 C -0.12 -3.07 5.40 30.43 0.16 -2.91 16 13 C 0.15 4.62 2.58 45.42 0.12 4.74 16 14 H 0.04 1.18 7.96 -2.39 -0.02 1.17 16 15 C -0.12 -2.87 2.79 -10.08 -0.03 -2.90 16 16 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 17 C -0.11 -2.67 6.53 31.63 0.21 -2.46 16 18 C 0.09 3.44 4.66 86.85 0.40 3.85 16 19 N -0.63 -26.47 3.23 -670.44 -2.17 -28.64 16 20 C -0.30 -15.60 10.22 84.03 0.86 -14.74 16 21 H 0.05 2.96 7.46 -2.91 -0.02 2.94 16 22 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.97 -60.68 13.70 21.65 0.30 -60.38 16 24 Si 1.11 51.53 24.60 68.60 1.69 53.22 16 25 H -0.32 -15.82 7.11 99.48 0.71 -15.11 16 26 H -0.28 -12.02 6.86 99.48 0.68 -11.33 16 27 H -0.25 -10.47 5.31 99.48 0.53 -9.95 16 28 C 0.13 2.43 6.01 85.81 0.52 2.95 16 29 C -0.23 -5.87 9.52 22.63 0.22 -5.65 16 30 C 0.38 11.18 6.78 23.93 0.16 11.35 16 31 O -0.57 -22.39 17.71 8.94 0.16 -22.24 16 32 H 0.08 0.22 7.66 -2.39 -0.02 0.20 16 33 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.29 7.66 -2.39 -0.02 0.28 16 35 H 0.23 -0.22 6.21 -2.91 -0.02 -0.23 16 36 H 0.11 1.05 4.12 -7.68 -0.03 1.01 16 37 H 0.12 0.76 8.04 -2.39 -0.02 0.74 16 38 H 0.05 1.42 8.11 -2.39 -0.02 1.40 16 39 H 0.07 2.01 7.75 -2.39 -0.02 1.99 16 40 H 0.10 1.95 8.12 -2.39 -0.02 1.93 16 41 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.03 1.11 4.03 -2.39 -0.01 1.10 16 43 H 0.03 1.23 6.75 -2.38 -0.02 1.22 16 44 H 0.25 15.40 8.73 -92.71 -0.81 14.59 16 45 H 0.11 1.45 8.12 -2.39 -0.02 1.43 16 46 H 0.10 1.92 7.00 -2.39 -0.02 1.90 16 47 H 0.15 4.12 7.86 -2.91 -0.02 4.10 16 Total: -1.00 -88.99 362.11 2.72 -86.27 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.26 Total: 4.69 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.52 Total: 8.04 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -5.03 Total: -107.44 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.71 Total: -44.78 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 1.69 Total: 53.22 kcal Total: -88.99 2.72 -86.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036771284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.684 kcal (2) G-P(sol) polarization free energy of solvation -88.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds