Wall clock time and date at job start Wed Apr 1 2020 04:07:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.36014 * 116.99888 * 2 1
4 4 C 1.35852 * 120.30885 * 0.02562 * 3 2 1
5 5 N 1.35449 * 120.77060 * 179.97438 * 4 3 2
6 6 H 0.97004 * 119.28763 * 179.74386 * 5 4 3
7 7 C 1.36425 * 121.41312 * 0.02562 * 5 4 3
8 8 C 1.48068 * 119.71861 * 180.02562 * 7 5 4
9 9 O 1.21511 * 119.99890 * 220.75275 * 8 7 5
10 10 N 1.34784 * 120.00153 * 40.75124 * 8 7 5
11 11 C 1.46942 * 120.44296 * 4.50411 * 10 8 7
12 12 C 1.53588 * 108.53150 * 125.75092 * 11 10 8
13 13 H 1.09005 * 110.59832 * 172.15869 * 12 11 10
14 14 C 1.53369 * 108.68924 * 294.36001 * 12 11 10
15 15 C 1.53010 * 109.26810 * 60.29405 * 14 12 11
16 16 C 1.53008 * 109.80016 * 60.56789 * 15 14 12
17 17 C 1.53365 * 109.25503 * 299.42521 * 16 15 14
18 18 H 1.09004 * 111.08444 * 177.83018 * 17 16 15
19 19 C 1.46947 * 120.44189 * 184.22980 * 10 8 7
20 20 N 1.47564 * 107.98693 * 56.37554 * 17 16 15
21 21 C 1.36935 * 121.61461 * 122.23779 * 20 17 16
22 22 H 1.08003 * 120.00056 * 33.63354 * 21 20 17
23 23 C 1.38809 * 120.00174 * 213.63882 * 21 20 17
24 24 N 1.31619 * 120.00340 * 18.75145 * 23 21 20
25 25 Si 1.86805 * 119.99971 * 198.75504 * 23 21 20
26 26 H 1.48500 * 109.47418 * 0.02562 * 25 23 21
27 27 H 1.48498 * 109.46905 * 119.99940 * 25 23 21
28 28 H 1.48498 * 109.47066 * 239.99723 * 25 23 21
29 29 C 1.36169 * 120.55845 * 0.02562 * 7 5 4
30 30 C 1.41565 * 120.31548 * 180.02562 * 3 2 1
31 31 O 1.22268 * 120.65702 * 0.02562 * 30 3 2
32 32 H 1.08998 * 109.47119 * 299.99760 * 1 2 3
33 33 H 1.08996 * 109.47235 * 60.00106 * 1 2 3
34 34 H 1.09001 * 109.46864 * 179.97438 * 1 2 3
35 35 H 1.08000 * 119.61662 * 0.02562 * 4 3 2
36 36 H 1.08996 * 109.62598 * 245.46825 * 11 10 8
37 37 H 1.09006 * 109.62374 * 6.03939 * 11 10 8
38 38 H 1.08992 * 109.50743 * 180.22848 * 14 12 11
39 39 H 1.08999 * 109.50570 * 300.35550 * 14 12 11
40 40 H 1.09009 * 109.41551 * 300.46715 * 15 14 12
41 41 H 1.08997 * 109.36253 * 180.63946 * 15 14 12
42 42 H 1.09000 * 109.50707 * 179.48698 * 16 15 14
43 43 H 1.09009 * 109.54050 * 59.37785 * 16 15 14
44 44 H 1.09004 * 109.62575 * 353.95376 * 19 10 8
45 45 H 1.08996 * 109.62328 * 114.51902 * 19 10 8
46 46 H 0.96997 * 120.00466 * 179.97438 * 24 23 21
47 47 H 1.08004 * 120.40712 * 180.02562 * 29 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2119 0.0000
4 6 1.3127 2.3552 0.0005
5 7 1.9179 3.5670 0.0010
6 1 1.3730 4.3695 -0.0024
7 6 3.2772 3.6830 0.0006
8 6 3.8993 5.0266 0.0017
9 8 4.8776 5.2438 -0.6854
10 7 3.3803 6.0089 0.7650
11 6 2.2592 5.7321 1.6737
12 6 2.6523 6.1877 3.0868
13 1 1.7980 6.1264 3.7610
14 6 3.8097 5.3113 3.5815
15 6 5.0030 5.4704 2.6372
16 6 5.4585 6.9310 2.6191
17 6 4.3076 7.8136 2.1203
18 1 4.5879 8.8669 2.1318
19 6 3.9321 7.3695 0.7039
20 7 3.1410 7.5770 2.9924
21 6 2.5410 8.5971 3.6811
22 1 2.5004 9.5876 3.2524
23 6 1.9850 8.3584 4.9304
24 7 2.3382 7.2911 5.6149
25 14 0.7354 9.5518 5.6402
26 1 0.5106 10.6622 4.6802
27 1 -0.5456 8.8409 5.8828
28 1 1.2474 10.1006 6.9216
29 6 4.0667 2.5735 -0.0010
30 6 3.4598 1.2938 -0.0005
31 8 4.1430 0.2798 -0.0015
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 -0.3633 -1.0277 -0.0005
35 1 0.2343 2.2973 0.0014
36 1 1.3769 6.2808 1.3442
37 1 2.0479 4.6628 1.6793
38 1 4.0970 5.6209 4.5863
39 1 3.4949 4.2678 3.5976
40 1 4.7114 5.1693 1.6309
41 1 5.8226 4.8395 2.9810
42 1 6.3141 7.0373 1.9522
43 1 5.7418 7.2371 3.6263
44 1 4.8204 7.3763 0.0722
45 1 3.1844 8.0497 0.2963
46 1 1.9500 7.1244 6.4881
47 1 5.1426 2.6681 -0.0010
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001039763062.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:07:39
Heat of formation + Delta-G solvation = -0.664141 kcal
Electronic energy + Delta-G solvation = -32854.914430 eV
Core-core repulsion = 28620.205756 eV
Total energy + Delta-G solvation = -4234.708674 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-41.85465 -40.48275 -38.53213 -37.82438 -37.63715 -34.28267 -32.98448 -32.22528
-31.65286 -30.76476 -30.52265 -27.89290 -27.21261 -25.87459 -24.63999 -23.40686
-23.28998 -21.72328 -21.51153 -20.51056 -19.32919 -18.49257 -18.13233 -17.69123
-16.55839 -16.35937 -16.23752 -15.99006 -15.31625 -15.17000 -14.79029 -14.61142
-14.34282 -14.21606 -14.11117 -13.76987 -13.50986 -13.40965 -13.21936 -13.01143
-12.83654 -12.59732 -12.29487 -12.00443 -11.74202 -11.63792 -11.48688 -11.36424
-11.10542 -10.87958 -10.45768 -10.38062 -10.32221 -10.20691 -10.16260 -9.65634
-9.54886 -9.47745 -9.45008 -8.69030 -8.19849 -7.76288 -6.75950 -6.01276
-3.49037 0.73700 1.07304 2.31312 2.63434 3.02602 3.10161 3.21815
3.32557 3.33221 3.62849 4.09049 4.28704 4.30646 4.53101 4.79661
4.88043 4.89212 4.94535 5.14415 5.22697 5.38204 5.40413 5.49671
5.54270 5.61035 5.67297 5.73670 5.79402 5.90643 5.97652 6.04207
6.14320 6.18932 6.31758 6.44570 6.50031 6.54597 6.57944 6.71942
6.87736 6.90170 6.95610 7.04171 7.14368 7.34931 7.46974 7.63979
7.95607 7.98101 8.21953 8.94968 9.56118 10.21330 11.05696
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.013896 B = 0.003746 C = 0.003295
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.463454 B = 7473.686073 C = 8495.349636
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.289 6.289
3 C -0.034 4.034
4 C 0.027 3.973
5 N -0.561 5.561
6 H 0.426 0.574
7 C 0.139 3.861
8 C 0.554 3.446
9 O -0.518 6.518
10 N -0.579 5.579
11 C 0.063 3.937
12 C 0.186 3.814
13 H 0.106 0.894
14 C -0.118 4.118
15 C -0.136 4.136
16 C -0.122 4.122
17 C 0.151 3.849
18 H 0.082 0.918
19 C 0.101 3.899
20 N -0.575 5.575
21 C -0.262 4.262
22 H 0.066 0.934
23 C 0.015 3.985
24 N -0.889 5.889
25 Si 0.899 3.101
26 H -0.277 1.277
27 H -0.289 1.289
28 H -0.289 1.289
29 C -0.224 4.224
30 C 0.404 3.596
31 O -0.501 6.501
32 H 0.055 0.945
33 H 0.053 0.947
34 H 0.102 0.898
35 H 0.170 0.830
36 H 0.072 0.928
37 H 0.075 0.925
38 H 0.082 0.918
39 H 0.034 0.966
40 H 0.070 0.930
41 H 0.036 0.964
42 H 0.044 0.956
43 H 0.060 0.940
44 H 0.087 0.913
45 H 0.069 0.931
46 H 0.255 0.745
47 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.253 -5.877 -10.095 13.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.200 6.200
3 C -0.085 4.085
4 C -0.100 4.100
5 N -0.176 5.176
6 H 0.265 0.735
7 C 0.027 3.973
8 C 0.340 3.660
9 O -0.394 6.394
10 N -0.311 5.311
11 C -0.061 4.061
12 C 0.078 3.922
13 H 0.123 0.877
14 C -0.157 4.157
15 C -0.174 4.174
16 C -0.161 4.161
17 C 0.043 3.957
18 H 0.100 0.900
19 C -0.022 4.022
20 N -0.296 5.296
21 C -0.391 4.391
22 H 0.084 0.916
23 C -0.186 4.186
24 N -0.531 5.531
25 Si 0.728 3.272
26 H -0.202 1.202
27 H -0.215 1.215
28 H -0.216 1.216
29 C -0.251 4.251
30 C 0.294 3.706
31 O -0.386 6.386
32 H 0.074 0.926
33 H 0.072 0.928
34 H 0.120 0.880
35 H 0.187 0.813
36 H 0.091 0.909
37 H 0.093 0.907
38 H 0.101 0.899
39 H 0.053 0.947
40 H 0.088 0.912
41 H 0.055 0.945
42 H 0.062 0.938
43 H 0.079 0.921
44 H 0.105 0.895
45 H 0.087 0.913
46 H 0.065 0.935
47 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -5.370 -6.521 -10.271 13.299
hybrid contribution -1.348 1.061 0.748 1.872
sum -6.718 -5.460 -9.523 12.869
Atomic orbital electron populations
1.23127 0.79247 1.04414 1.00973 1.86273 1.20263 1.24363 1.89126
1.20402 0.94793 0.84616 1.08717 1.21666 0.98778 0.84228 1.05280
1.41133 1.05113 1.08722 1.62652 0.73515 1.20374 0.83009 0.95956
0.97991 1.17750 0.84461 0.82966 0.80846 1.90842 1.25111 1.80711
1.42736 1.48222 1.33956 1.09882 1.39031 1.23109 0.88254 1.00145
0.94568 1.20915 0.96987 0.84478 0.89788 0.87660 1.21872 0.95884
0.97075 1.00900 1.22049 0.97842 0.96478 1.01025 1.21923 0.97328
0.95940 1.00947 1.21194 0.88368 0.97626 0.88502 0.89957 1.22303
0.99098 0.80380 1.00462 1.44353 1.29497 1.03820 1.51981 1.19097
1.31875 0.91095 0.97052 0.91596 1.25165 1.00605 0.97615 0.95234
1.70023 1.42385 1.28548 1.12122 0.86299 0.81266 0.80709 0.78887
1.20153 1.21517 1.21618 1.22333 1.01860 0.90453 1.10465 1.16741
0.86085 0.89727 0.78081 1.90845 1.65737 1.37551 1.44426 0.92599
0.92846 0.88000 0.81337 0.90948 0.90727 0.89938 0.94700 0.91238
0.94532 0.93769 0.92075 0.89481 0.91265 0.93476 0.81949
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 9.81 101.05 0.99 1.11 16
2 O -0.29 -3.69 10.33 -35.61 -0.37 -4.05 16
3 C -0.03 -0.44 6.71 -39.17 -0.26 -0.71 16
4 C 0.03 0.25 10.22 -16.81 -0.17 0.08 16
5 N -0.56 -5.43 3.74 -9.58 -0.04 -5.47 16
6 H 0.43 3.16 6.93 -40.82 -0.28 2.88 16
7 C 0.14 1.83 5.75 -82.54 -0.47 1.36 16
8 C 0.55 8.29 4.70 -12.22 -0.06 8.23 16
9 O -0.52 -9.14 16.25 5.36 0.09 -9.05 16
10 N -0.58 -8.51 1.66 -173.57 -0.29 -8.79 16
11 C 0.06 0.91 4.51 -3.50 -0.02 0.90 16
12 C 0.19 3.56 2.64 -66.85 -0.18 3.38 16
13 H 0.11 2.31 6.38 -51.93 -0.33 1.97 16
14 C -0.12 -2.30 5.54 -26.53 -0.15 -2.44 16
15 C -0.14 -2.48 5.55 -26.72 -0.15 -2.62 16
16 C -0.12 -2.24 5.57 -26.54 -0.15 -2.39 16
17 C 0.15 2.74 3.62 -67.10 -0.24 2.50 16
18 H 0.08 1.49 8.01 -51.93 -0.42 1.07 16
19 C 0.10 1.56 5.85 -3.74 -0.02 1.54 16
20 N -0.58 -12.03 2.49 -155.71 -0.39 -12.42 16
21 C -0.26 -6.22 9.65 -15.06 -0.15 -6.36 16
22 H 0.07 1.57 7.90 -52.48 -0.41 1.15 16
23 C 0.01 0.35 4.90 -17.43 -0.09 0.27 16
24 N -0.89 -22.71 11.15 55.49 0.62 -22.09 16
25 Si 0.90 19.46 29.59 -169.99 -5.03 14.43 16
26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16
27 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16
28 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16
29 C -0.22 -3.35 9.55 -39.03 -0.37 -3.72 16
30 C 0.40 6.57 6.78 -37.02 -0.25 6.32 16
31 O -0.50 -10.03 17.71 -11.15 -0.20 -10.23 16
32 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16
33 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16
34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16
35 H 0.17 0.85 6.21 -52.49 -0.33 0.52 16
36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
37 H 0.07 0.92 4.93 -51.93 -0.26 0.67 16
38 H 0.08 1.89 7.67 -51.93 -0.40 1.50 16
39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.07 1.21 2.50 -52.44 -0.13 1.07 16
41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
43 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16
44 H 0.09 1.34 6.97 -51.93 -0.36 0.98 16
45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
46 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16
47 H 0.16 2.49 8.04 -52.48 -0.42 2.07 16
LS Contribution 361.75 15.07 5.45 5.45
Total: -1.00 -31.56 361.75 -8.11 -39.67
By element:
Atomic # 1 Polarization: 11.34 SS G_CDS: -6.23 Total: 5.11 kcal
Atomic # 6 Polarization: 9.17 SS G_CDS: -1.73 Total: 7.44 kcal
Atomic # 7 Polarization: -48.68 SS G_CDS: -0.09 Total: -48.77 kcal
Atomic # 8 Polarization: -22.86 SS G_CDS: -0.48 Total: -23.34 kcal
Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -31.56 -8.11 -39.67 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001039763062.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.010 kcal
(2) G-P(sol) polarization free energy of solvation -31.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.445 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.664 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds