Wall clock time and date at job start Wed Apr 1 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36014 * 117.00374 * 2 1 4 4 C 1.35844 * 120.31058 * 0.02562 * 3 2 1 5 5 N 1.35454 * 120.77375 * 179.72061 * 4 3 2 6 6 H 0.96993 * 119.29031 * 180.25593 * 5 4 3 7 7 C 1.36424 * 121.40783 * 0.52526 * 5 4 3 8 8 C 1.48075 * 119.71757 * 179.75273 * 7 5 4 9 9 O 1.21504 * 119.99755 * 151.80132 * 8 7 5 10 10 N 1.34771 * 119.99724 * 331.79884 * 8 7 5 11 11 C 1.46636 * 119.78498 * 353.00652 * 10 8 7 12 12 C 1.53893 * 110.79257 * 227.68031 * 11 10 8 13 13 C 1.51974 * 107.29325 * 308.25222 * 12 11 10 14 14 H 1.09000 * 111.57195 * 303.14332 * 13 12 11 15 15 C 1.53702 * 114.99930 * 175.43458 * 13 12 11 16 16 C 1.55302 * 101.81268 * 206.54594 * 15 13 12 17 17 N 1.48149 * 107.04392 * 22.44504 * 16 15 13 18 18 C 1.36939 * 126.39817 * 184.96741 * 17 16 15 19 19 H 1.08004 * 120.00202 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99928 * 0.03470 * 18 17 16 21 21 N 1.31616 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99950 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46661 * 120.00440 * 22 20 18 25 25 H 1.48505 * 109.46919 * 240.00248 * 22 20 18 26 26 C 1.45500 * 107.20603 * 5.00106 * 17 16 15 27 27 H 1.08993 * 109.56960 * 85.84554 * 26 17 16 28 28 C 1.47804 * 119.75352 * 173.14397 * 10 8 7 29 29 C 1.36177 * 120.56092 * 359.47770 * 7 5 4 30 30 C 1.41571 * 120.31450 * 179.97438 * 3 2 1 31 31 O 1.22269 * 120.65611 * 0.04997 * 30 3 2 32 32 H 1.09010 * 109.46922 * 300.00013 * 1 2 3 33 33 H 1.09003 * 109.46795 * 59.99710 * 1 2 3 34 34 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 35 35 H 1.07995 * 119.61736 * 359.97438 * 4 3 2 36 36 H 1.08991 * 109.13364 * 107.37330 * 11 10 8 37 37 H 1.09002 * 109.20573 * 348.02900 * 11 10 8 38 38 H 1.09006 * 109.88867 * 188.80674 * 12 11 10 39 39 H 1.08997 * 109.89321 * 67.70508 * 12 11 10 40 40 H 1.09001 * 110.96131 * 88.41768 * 15 13 12 41 41 H 1.09004 * 110.95734 * 324.67556 * 15 13 12 42 42 H 1.08996 * 109.91960 * 263.09374 * 16 15 13 43 43 H 1.09006 * 109.91385 * 141.79244 * 16 15 13 44 44 H 0.96999 * 120.00255 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.06266 * 9.52426 * 28 10 8 46 46 H 1.09002 * 110.06433 * 248.07253 * 28 10 8 47 47 H 1.08007 * 120.40421 * 180.27544 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3130 2.3552 0.0005 5 7 1.9182 3.5670 0.0062 6 1 1.3735 4.3695 0.0102 7 6 3.2775 3.6828 0.0009 8 6 3.8998 5.0264 0.0019 9 8 4.9986 5.1866 0.4950 10 7 3.2472 6.0715 -0.5443 11 6 1.9945 5.8480 -1.2728 12 6 2.0090 6.5852 -2.6236 13 6 2.3843 8.0313 -2.3450 14 1 1.6998 8.4929 -1.6333 15 6 2.5588 8.9093 -3.5944 16 6 3.5517 9.9904 -3.0871 17 7 4.2682 9.4116 -1.9267 18 6 5.1655 10.0593 -1.1202 19 1 5.6298 9.5345 -0.2983 20 6 5.4781 11.3906 -1.3588 21 7 4.9118 12.0304 -2.3599 22 14 6.7016 12.2744 -0.2581 23 1 7.1916 11.3406 0.7872 24 1 7.8481 12.7492 -1.0739 25 1 6.0381 13.4360 0.3867 26 6 3.8410 8.0261 -1.8045 27 1 4.4540 7.3968 -2.4497 28 6 3.8012 7.4349 -0.4072 29 6 4.0670 2.5732 0.0003 30 6 3.4599 1.2936 0.0005 31 8 4.1430 0.2796 0.0001 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.2346 2.2974 0.0005 36 1 1.1619 6.2147 -0.6727 37 1 1.8675 4.7797 -1.4483 38 1 1.0207 6.5400 -3.0814 39 1 2.7464 6.1316 -3.2858 40 1 1.6110 9.3588 -3.8907 41 1 2.9911 8.3374 -4.4155 42 1 3.0049 10.8815 -2.7791 43 1 4.2621 10.2410 -3.8749 44 1 5.1300 12.9607 -2.5264 45 1 4.8078 7.3895 0.0085 46 1 3.1586 8.0369 0.2354 47 1 5.1429 2.6678 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042153561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:10 Heat of formation + Delta-G solvation = -33.473236 kcal Electronic energy + Delta-G solvation = -31262.660890 eV Core-core repulsion = 27026.529507 eV Total energy + Delta-G solvation = -4236.131383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.84343 -41.33925 -39.96086 -39.04706 -38.85298 -37.05195 -34.73651 -32.99103 -32.83882 -32.22021 -30.79386 -30.14539 -28.37768 -26.74081 -26.32318 -24.47596 -24.19117 -23.67921 -22.03944 -21.77085 -21.03824 -19.87325 -19.21661 -18.68838 -18.26890 -17.50585 -17.36918 -17.11508 -16.78396 -16.49395 -16.34122 -15.90225 -15.67085 -15.59191 -15.27747 -15.18366 -15.01550 -14.72074 -14.50096 -14.41930 -14.08969 -13.86673 -13.74798 -13.52151 -13.14118 -13.06958 -12.78779 -12.54548 -12.34726 -12.23406 -12.15400 -11.98904 -11.79588 -11.60696 -11.53082 -11.29491 -11.04265 -10.74306 -10.73522 -10.55161 -9.91603 -8.91473 -8.77064 -7.87696 -5.22152 -0.50756 0.13104 1.29944 1.34483 1.43044 1.45346 1.54418 1.81778 2.32052 2.47761 2.52591 2.93819 3.31417 3.45269 3.53675 3.61553 3.68680 3.82627 3.89800 3.92923 4.18142 4.22927 4.27487 4.36642 4.40827 4.44354 4.52736 4.57049 4.58382 4.65615 4.74874 4.81742 4.87185 4.87777 5.00268 5.10432 5.15132 5.19555 5.28287 5.40335 5.48299 5.58073 5.67186 5.77620 5.79351 6.04748 6.18632 6.29551 6.67765 6.90377 7.07530 7.76130 8.42078 9.23252 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.002616 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.219252 B =10701.972407 C =11679.058083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.324 6.324 3 C -0.057 4.057 4 C 0.073 3.927 5 N -0.536 5.536 6 H 0.447 0.553 7 C 0.154 3.846 8 C 0.552 3.448 9 O -0.551 6.551 10 N -0.590 5.590 11 C 0.068 3.932 12 C -0.109 4.109 13 C -0.096 4.096 14 H 0.089 0.911 15 C -0.123 4.123 16 C 0.178 3.822 17 N -0.612 5.612 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.968 3.032 23 H -0.270 1.270 24 H -0.296 1.296 25 H -0.288 1.288 26 C 0.143 3.857 27 H 0.004 0.996 28 C 0.128 3.872 29 C -0.236 4.236 30 C 0.380 3.620 31 O -0.569 6.569 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.233 0.767 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.025 0.975 43 H -0.006 1.006 44 H 0.246 0.754 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.773 -17.163 1.811 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.238 6.238 3 C -0.108 4.108 4 C -0.055 4.055 5 N -0.155 5.155 6 H 0.294 0.706 7 C 0.039 3.961 8 C 0.338 3.662 9 O -0.427 6.427 10 N -0.323 5.323 11 C -0.052 4.052 12 C -0.147 4.147 13 C -0.115 4.115 14 H 0.107 0.893 15 C -0.161 4.161 16 C 0.054 3.946 17 N -0.337 5.337 18 C -0.363 4.363 19 H 0.096 0.904 20 C -0.255 4.255 21 N -0.597 5.597 22 Si 0.797 3.203 23 H -0.195 1.195 24 H -0.223 1.223 25 H -0.215 1.215 26 C 0.035 3.965 27 H 0.022 0.978 28 C 0.005 3.995 29 C -0.263 4.263 30 C 0.276 3.724 31 O -0.459 6.459 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.249 0.751 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.013 0.987 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.708 -17.570 2.105 27.239 hybrid contribution 1.445 1.490 0.333 2.103 sum -19.263 -16.080 2.438 25.210 Atomic orbital electron populations 1.23538 0.76099 1.06069 1.03255 1.86244 1.23525 1.24551 1.89445 1.20085 0.93346 0.86495 1.10837 1.22390 1.00798 0.82077 1.00238 1.41720 1.03699 1.10360 1.59694 0.70589 1.19765 0.84444 0.93348 0.98506 1.18313 0.84922 0.83563 0.79399 1.90870 1.20579 1.83787 1.47483 1.48330 1.25310 1.06037 1.52615 1.22828 0.84926 1.03095 0.94389 1.21785 1.04595 0.92305 0.96056 1.22251 0.95349 0.96325 0.97595 0.89267 1.22598 0.99368 0.96960 0.97168 1.21380 0.91822 0.94013 0.87407 1.44416 1.48657 1.07675 1.32947 1.19346 1.15981 0.93429 1.07519 0.90446 1.25514 1.02217 0.97757 0.99978 1.70141 1.47241 1.10171 1.32131 0.85161 0.78394 0.78524 0.78224 1.19494 1.22319 1.21490 1.21175 0.95334 0.85791 0.94201 0.97810 1.21473 0.99487 0.80458 0.98044 1.22229 1.01697 0.91155 1.11210 1.17254 0.88241 0.89097 0.77846 1.90816 1.67367 1.39122 1.48622 0.90347 0.89996 0.87270 0.75086 0.86054 0.86721 0.85698 0.92041 0.89299 0.91642 0.95691 0.98729 0.94418 0.92099 0.89503 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 -6.31 10.33 -78.58 -0.81 -7.12 16 3 C -0.06 -1.09 6.71 22.54 0.15 -0.94 16 4 C 0.07 0.50 10.22 83.58 0.85 1.35 16 5 N -0.54 -4.23 3.79 -184.21 -0.70 -4.92 16 6 H 0.45 0.27 5.60 -92.71 -0.52 -0.25 16 7 C 0.15 2.98 6.05 40.56 0.25 3.23 16 8 C 0.55 14.25 7.49 86.86 0.65 14.90 16 9 O -0.55 -20.13 15.97 -3.73 -0.06 -20.19 16 10 N -0.59 -12.94 3.02 -821.88 -2.48 -15.42 16 11 C 0.07 0.68 4.62 86.65 0.40 1.09 16 12 C -0.11 -1.53 5.72 30.56 0.17 -1.36 16 13 C -0.10 -2.40 2.61 -10.08 -0.03 -2.43 16 14 H 0.09 2.14 8.13 -2.39 -0.02 2.13 16 15 C -0.12 -3.73 6.54 31.62 0.21 -3.52 16 16 C 0.18 8.21 5.45 86.85 0.47 8.68 16 17 N -0.61 -29.53 3.35 -669.34 -2.24 -31.77 16 18 C -0.23 -12.72 9.88 84.03 0.83 -11.89 16 19 H 0.08 4.15 7.41 -2.91 -0.02 4.13 16 20 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 21 N -0.95 -55.84 10.44 21.65 0.23 -55.61 16 22 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 C 0.14 5.19 2.77 45.60 0.13 5.32 16 27 H 0.00 0.18 7.90 -2.39 -0.02 0.16 16 28 C 0.13 4.09 5.70 85.73 0.49 4.58 16 29 C -0.24 -6.26 9.52 22.63 0.22 -6.05 16 30 C 0.38 11.14 6.78 23.93 0.16 11.30 16 31 O -0.57 -22.60 17.71 8.93 0.16 -22.45 16 32 H 0.08 0.03 7.66 -2.38 -0.02 0.01 16 33 H 0.08 -0.02 7.66 -2.39 -0.02 -0.04 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.23 -1.14 6.21 -2.91 -0.02 -1.16 16 36 H 0.12 0.27 7.84 -2.39 -0.02 0.25 16 37 H 0.12 0.55 4.77 -2.39 -0.01 0.54 16 38 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 1.07 7.97 -2.39 -0.02 1.05 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.06 1.89 8.12 -2.38 -0.02 1.87 16 42 H 0.02 1.28 7.21 -2.39 -0.02 1.27 16 43 H -0.01 -0.30 7.78 -2.38 -0.02 -0.32 16 44 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.06 2.40 6.74 -2.39 -0.02 2.39 16 46 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.14 4.37 7.83 -2.91 -0.02 4.35 16 Total: -1.00 -92.38 370.54 3.15 -89.23 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 0.50 Total: -2.01 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 6.53 Total: 22.41 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -5.19 Total: -107.72 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.71 Total: -49.76 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -92.38 3.15 -89.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042153561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.761 kcal (2) G-P(sol) polarization free energy of solvation -92.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds