Wall clock time and date at job start Wed Apr 1 2020 04:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36011 * 117.00060 * 2 1 4 4 C 1.35856 * 120.31210 * 0.28423 * 3 2 1 5 5 N 1.35437 * 120.77621 * 180.27130 * 4 3 2 6 6 H 0.97002 * 119.29994 * 179.71465 * 5 4 3 7 7 C 1.36432 * 121.41132 * 359.44136 * 5 4 3 8 8 C 1.48066 * 119.72086 * 180.29835 * 7 5 4 9 9 O 1.21516 * 119.99857 * 184.64775 * 8 7 5 10 10 N 1.34777 * 120.00353 * 4.64965 * 8 7 5 11 11 C 1.46494 * 120.00573 * 182.89010 * 10 8 7 12 12 H 1.09008 * 109.32326 * 51.27287 * 11 10 8 13 13 C 1.53027 * 109.32678 * 291.63777 * 11 10 8 14 14 C 1.53981 * 108.82091 * 295.13711 * 13 11 10 15 15 H 1.09001 * 112.99106 * 168.08904 * 14 13 11 16 16 C 1.55421 * 106.41380 * 293.81734 * 14 13 11 17 17 C 1.55182 * 100.35229 * 73.38010 * 16 14 13 18 18 H 1.08999 * 112.48573 * 162.66300 * 17 16 14 19 19 C 1.52980 * 109.32874 * 170.74099 * 11 10 8 20 20 N 1.47790 * 104.25240 * 40.54794 * 17 16 14 21 21 C 1.36939 * 125.85623 * 153.55218 * 20 17 16 22 22 H 1.08001 * 119.99815 * 9.41815 * 21 20 17 23 23 C 1.38808 * 120.00378 * 189.41991 * 21 20 17 24 24 N 1.31625 * 119.99782 * 354.78656 * 23 21 20 25 25 Si 1.86795 * 120.00452 * 174.78465 * 23 21 20 26 26 H 1.48501 * 109.46907 * 90.00059 * 25 23 21 27 27 H 1.48498 * 109.47549 * 209.99928 * 25 23 21 28 28 H 1.48508 * 109.47084 * 330.00518 * 25 23 21 29 29 C 1.47079 * 108.29030 * 333.53508 * 20 17 16 30 30 C 1.36173 * 120.55884 * 0.27189 * 7 5 4 31 31 C 1.41568 * 120.31631 * 180.02562 * 3 2 1 32 32 O 1.22259 * 120.65452 * 0.02768 * 31 3 2 33 33 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46908 * 299.99304 * 1 2 3 35 35 H 1.08993 * 109.47397 * 59.99267 * 1 2 3 36 36 H 1.07997 * 119.61616 * 0.02562 * 4 3 2 37 37 H 0.96998 * 119.99845 * 2.88988 * 10 8 7 38 38 H 1.08999 * 109.58421 * 54.93592 * 13 11 10 39 39 H 1.08994 * 109.58167 * 175.33973 * 13 11 10 40 40 H 1.08998 * 111.23304 * 191.15239 * 16 14 13 41 41 H 1.08997 * 111.24249 * 315.60442 * 16 14 13 42 42 H 1.08995 * 109.53323 * 185.06685 * 19 11 10 43 43 H 1.09004 * 109.53500 * 305.29353 * 19 11 10 44 44 H 0.96998 * 119.99909 * 179.97438 * 24 23 21 45 45 H 1.08994 * 109.97497 * 241.75063 * 29 20 17 46 46 H 1.08997 * 109.97989 * 120.46559 * 29 20 17 47 47 H 1.08000 * 120.40654 * 180.02562 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3553 0.0058 5 7 1.9179 3.5670 0.0004 6 1 1.3731 4.3696 0.0005 7 6 3.2773 3.6829 0.0003 8 6 3.8994 5.0266 0.0009 9 8 5.1065 5.1372 -0.0845 10 7 3.1269 6.1269 0.0962 11 6 3.7363 7.4576 0.0331 12 1 4.3748 7.5205 -0.8481 13 6 4.5814 7.6876 1.2880 14 6 3.6521 7.7091 2.5156 15 1 4.1936 7.6617 3.4604 16 6 2.7558 8.9701 2.3659 17 6 1.8072 8.5046 1.2294 18 1 0.9061 9.1142 1.1627 19 6 2.6350 8.5146 -0.0677 20 7 1.5115 7.0941 1.5572 21 6 0.3844 6.4058 1.1951 22 1 -0.3125 6.8413 0.4943 23 6 0.1374 5.1485 1.7289 24 7 1.0344 4.5741 2.5022 25 14 -1.4679 4.2717 1.3501 26 1 -1.3044 3.4467 0.1262 27 1 -1.8352 3.3961 2.4918 28 1 -2.5403 5.2753 1.1309 29 6 2.6356 6.5563 2.3385 30 6 4.0668 2.5734 0.0001 31 6 3.4598 1.2937 -0.0005 32 8 4.1430 0.2798 -0.0015 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8900 35 1 -0.3634 0.5139 -0.8898 36 1 0.2344 2.2974 0.0109 37 1 2.1673 6.0377 0.2065 38 1 5.3066 6.8806 1.3931 39 1 5.1025 8.6415 1.2077 40 1 2.2032 9.1728 3.2832 41 1 3.3417 9.8370 2.0607 42 1 3.0850 9.4977 -0.2052 43 1 1.9879 8.2871 -0.9148 44 1 0.8617 3.6956 2.8755 45 1 3.1002 5.7294 1.8016 46 1 2.2835 6.2173 3.3127 47 1 5.1426 2.6681 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047112734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:41 Heat of formation + Delta-G solvation = 14.820275 kcal Electronic energy + Delta-G solvation = -33927.605212 eV Core-core repulsion = 29693.567993 eV Total energy + Delta-G solvation = -4234.037219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.39016 -40.40875 -38.50237 -37.49032 -37.05544 -34.08272 -33.62479 -31.34736 -30.95145 -30.62772 -30.07693 -28.17735 -27.33429 -25.62795 -24.11664 -23.50378 -22.72732 -21.77726 -20.24814 -19.86284 -19.24922 -18.94926 -17.72350 -17.34087 -16.94983 -15.90711 -15.74901 -15.66707 -15.32046 -15.01232 -14.73772 -14.57343 -14.15594 -13.88821 -13.85100 -13.68938 -13.12887 -12.89822 -12.77004 -12.53410 -12.43194 -12.29949 -12.10624 -12.04012 -11.86849 -11.76409 -11.36267 -11.29206 -11.16522 -11.09168 -10.92052 -10.48914 -10.21994 -10.03276 -9.86526 -9.75846 -9.45943 -9.22628 -8.97927 -8.91241 -7.87611 -7.32704 -7.15406 -6.31862 -3.70934 1.22806 1.65942 2.74858 3.01565 3.02929 3.18739 3.33288 3.56579 3.62312 3.86389 4.24091 4.72977 4.84975 4.94531 5.04036 5.05432 5.17323 5.24197 5.26446 5.31340 5.38323 5.52447 5.57605 5.58190 5.70044 5.71040 5.88406 5.94551 5.97220 6.08423 6.08940 6.22691 6.28896 6.40470 6.49822 6.60424 6.60643 6.67253 6.72720 7.00497 7.12795 7.15596 7.28647 7.32143 7.46414 7.55627 7.74143 8.15164 8.53225 8.59152 8.71374 9.18100 9.92435 10.71152 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.005640 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.744921 B = 4962.964985 C = 6575.011321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.291 6.291 3 C -0.053 4.053 4 C 0.045 3.955 5 N -0.528 5.528 6 H 0.432 0.568 7 C 0.149 3.851 8 C 0.545 3.455 9 O -0.536 6.536 10 N -0.686 5.686 11 C 0.161 3.839 12 H 0.067 0.933 13 C -0.126 4.126 14 C -0.119 4.119 15 H 0.078 0.922 16 C -0.127 4.127 17 C 0.149 3.851 18 H 0.070 0.930 19 C -0.141 4.141 20 N -0.598 5.598 21 C -0.261 4.261 22 H 0.087 0.913 23 C -0.012 4.012 24 N -0.888 5.888 25 Si 0.882 3.118 26 H -0.283 1.283 27 H -0.278 1.278 28 H -0.272 1.272 29 C 0.145 3.855 30 C -0.237 4.237 31 C 0.404 3.596 32 O -0.525 6.525 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.160 0.840 37 H 0.431 0.569 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.265 0.735 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 5.634 -4.254 7.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.203 6.203 3 C -0.103 4.103 4 C -0.085 4.085 5 N -0.141 5.141 6 H 0.276 0.724 7 C 0.034 3.966 8 C 0.329 3.671 9 O -0.414 6.414 10 N -0.353 5.353 11 C 0.056 3.944 12 H 0.085 0.915 13 C -0.165 4.165 14 C -0.138 4.138 15 H 0.096 0.904 16 C -0.165 4.165 17 C 0.042 3.958 18 H 0.088 0.912 19 C -0.181 4.181 20 N -0.325 5.325 21 C -0.390 4.390 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.532 5.532 25 Si 0.710 3.290 26 H -0.211 1.211 27 H -0.204 1.204 28 H -0.197 1.197 29 C 0.021 3.979 30 C -0.265 4.265 31 C 0.297 3.703 32 O -0.412 6.412 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.177 0.823 37 H 0.287 0.713 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.311 4.776 -4.250 6.526 hybrid contribution -2.199 0.125 0.305 2.223 sum -3.510 4.901 -3.945 7.204 Atomic orbital electron populations 1.23072 0.79979 1.03825 1.00900 1.86210 1.19630 1.24725 1.89712 1.20361 0.94813 0.84265 1.10892 1.21799 0.98853 0.84736 1.03090 1.41274 1.05448 1.09258 1.58150 0.72401 1.20412 0.83133 0.95757 0.97329 1.17973 0.87004 0.83730 0.78388 1.90733 1.13423 1.86278 1.50930 1.47582 1.14690 1.04335 1.68686 1.20720 0.94069 0.81938 0.97661 0.91467 1.22109 0.97946 1.01721 0.94703 1.22808 0.96707 0.97305 0.96976 0.90356 1.22967 0.97812 0.96717 0.99008 1.21662 0.95008 0.87268 0.91882 0.91163 1.22528 0.97530 0.97510 1.00574 1.45025 1.18836 1.06445 1.62215 1.19292 0.99334 0.98328 1.22035 0.89518 1.25133 0.97902 0.98667 0.99498 1.69998 1.32561 1.16314 1.34324 0.86707 0.84541 0.80059 0.77671 1.21059 1.20369 1.19674 1.22096 0.85613 0.93353 0.96879 1.22246 1.01711 0.90492 1.12012 1.16644 0.85804 0.89732 0.78124 1.90781 1.65738 1.37648 1.47013 0.88213 0.93056 0.93133 0.82283 0.71333 0.90648 0.91998 0.91992 0.91919 0.91201 0.91874 0.92424 0.91389 0.93152 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.29 -5.36 10.33 -35.60 -0.37 -5.73 16 3 C -0.05 -1.02 6.71 -39.17 -0.26 -1.29 16 4 C 0.05 0.81 9.76 -16.81 -0.16 0.64 16 5 N -0.53 -9.66 4.12 -9.58 -0.04 -9.70 16 6 H 0.43 7.93 4.02 -40.82 -0.16 7.76 16 7 C 0.15 2.88 6.75 -82.53 -0.56 2.32 16 8 C 0.55 10.55 5.99 -12.23 -0.07 10.48 16 9 O -0.54 -11.12 14.84 5.35 0.08 -11.04 16 10 N -0.69 -12.24 2.76 -54.68 -0.15 -12.39 16 11 C 0.16 2.53 2.74 -67.93 -0.19 2.35 16 12 H 0.07 1.03 8.10 -51.92 -0.42 0.61 16 13 C -0.13 -1.98 5.14 -26.21 -0.13 -2.12 16 14 C -0.12 -1.97 4.33 -87.92 -0.38 -2.35 16 15 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.13 -1.87 6.18 -24.29 -0.15 -2.02 16 17 C 0.15 2.36 4.30 -65.61 -0.28 2.08 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 19 C -0.14 -1.97 5.42 -26.28 -0.14 -2.11 16 20 N -0.60 -11.42 1.76 -161.37 -0.28 -11.70 16 21 C -0.26 -5.31 8.11 -15.06 -0.12 -5.43 16 22 H 0.09 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.26 3.27 -17.43 -0.06 -0.31 16 24 N -0.89 -19.85 9.46 55.49 0.52 -19.33 16 25 Si 0.88 16.49 28.00 -169.99 -4.76 11.73 16 26 H -0.28 -4.76 5.77 56.52 0.33 -4.43 16 27 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 28 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 29 C 0.14 2.89 3.93 -2.82 -0.01 2.88 16 30 C -0.24 -4.77 9.53 -39.03 -0.37 -5.14 16 31 C 0.40 8.71 6.78 -37.02 -0.25 8.46 16 32 O -0.52 -12.80 17.71 -11.15 -0.20 -13.00 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.66 7.65 -51.93 -0.40 0.27 16 35 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 36 H 0.16 2.55 3.79 -52.49 -0.20 2.36 16 37 H 0.43 7.96 2.46 -40.82 -0.10 7.86 16 38 H 0.07 1.34 6.60 -51.93 -0.34 1.00 16 39 H 0.06 0.83 7.97 -51.93 -0.41 0.41 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 42 H 0.07 0.81 8.00 -51.93 -0.42 0.39 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.26 6.08 8.31 -40.82 -0.34 5.74 16 45 H 0.07 1.45 3.64 -58.47 -0.21 1.24 16 46 H 0.05 1.19 7.03 -51.93 -0.36 0.82 16 47 H 0.16 3.18 7.58 -52.49 -0.40 2.78 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -26.38 346.82 -8.09 -34.47 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -5.96 Total: 21.79 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.15 Total: 9.68 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.05 Total: -53.12 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.49 Total: -29.77 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -4.76 Total: 11.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.38 -8.09 -34.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047112734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.293 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds