Wall clock time and date at job start Wed Apr 1 2020 04:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36011 * 117.00060 * 2 1 4 4 C 1.35856 * 120.31210 * 0.28423 * 3 2 1 5 5 N 1.35437 * 120.77621 * 180.27130 * 4 3 2 6 6 H 0.97002 * 119.29994 * 179.71465 * 5 4 3 7 7 C 1.36432 * 121.41132 * 359.44136 * 5 4 3 8 8 C 1.48066 * 119.72086 * 180.29835 * 7 5 4 9 9 O 1.21516 * 119.99857 * 184.64775 * 8 7 5 10 10 N 1.34777 * 120.00353 * 4.64965 * 8 7 5 11 11 C 1.46494 * 120.00573 * 182.89010 * 10 8 7 12 12 H 1.09008 * 109.32326 * 51.27287 * 11 10 8 13 13 C 1.53027 * 109.32678 * 291.63777 * 11 10 8 14 14 C 1.53981 * 108.82091 * 295.13711 * 13 11 10 15 15 H 1.09001 * 112.99106 * 168.08904 * 14 13 11 16 16 C 1.55421 * 106.41380 * 293.81734 * 14 13 11 17 17 C 1.55182 * 100.35229 * 73.38010 * 16 14 13 18 18 H 1.08999 * 112.48573 * 162.66300 * 17 16 14 19 19 C 1.52980 * 109.32874 * 170.74099 * 11 10 8 20 20 N 1.47790 * 104.25240 * 40.54794 * 17 16 14 21 21 C 1.36939 * 125.85623 * 153.55218 * 20 17 16 22 22 H 1.08001 * 119.99815 * 9.41815 * 21 20 17 23 23 C 1.38808 * 120.00378 * 189.41991 * 21 20 17 24 24 N 1.31625 * 119.99782 * 354.78656 * 23 21 20 25 25 Si 1.86795 * 120.00452 * 174.78465 * 23 21 20 26 26 H 1.48501 * 109.46907 * 90.00059 * 25 23 21 27 27 H 1.48498 * 109.47549 * 209.99928 * 25 23 21 28 28 H 1.48508 * 109.47084 * 330.00518 * 25 23 21 29 29 C 1.47079 * 108.29030 * 333.53508 * 20 17 16 30 30 C 1.36173 * 120.55884 * 0.27189 * 7 5 4 31 31 C 1.41568 * 120.31631 * 180.02562 * 3 2 1 32 32 O 1.22259 * 120.65452 * 0.02768 * 31 3 2 33 33 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46908 * 299.99304 * 1 2 3 35 35 H 1.08993 * 109.47397 * 59.99267 * 1 2 3 36 36 H 1.07997 * 119.61616 * 0.02562 * 4 3 2 37 37 H 0.96998 * 119.99845 * 2.88988 * 10 8 7 38 38 H 1.08999 * 109.58421 * 54.93592 * 13 11 10 39 39 H 1.08994 * 109.58167 * 175.33973 * 13 11 10 40 40 H 1.08998 * 111.23304 * 191.15239 * 16 14 13 41 41 H 1.08997 * 111.24249 * 315.60442 * 16 14 13 42 42 H 1.08995 * 109.53323 * 185.06685 * 19 11 10 43 43 H 1.09004 * 109.53500 * 305.29353 * 19 11 10 44 44 H 0.96998 * 119.99909 * 179.97438 * 24 23 21 45 45 H 1.08994 * 109.97497 * 241.75063 * 29 20 17 46 46 H 1.08997 * 109.97989 * 120.46559 * 29 20 17 47 47 H 1.08000 * 120.40654 * 180.02562 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3553 0.0058 5 7 1.9179 3.5670 0.0004 6 1 1.3731 4.3696 0.0005 7 6 3.2773 3.6829 0.0003 8 6 3.8994 5.0266 0.0009 9 8 5.1065 5.1372 -0.0845 10 7 3.1269 6.1269 0.0962 11 6 3.7363 7.4576 0.0331 12 1 4.3748 7.5205 -0.8481 13 6 4.5814 7.6876 1.2880 14 6 3.6521 7.7091 2.5156 15 1 4.1936 7.6617 3.4604 16 6 2.7558 8.9701 2.3659 17 6 1.8072 8.5046 1.2294 18 1 0.9061 9.1142 1.1627 19 6 2.6350 8.5146 -0.0677 20 7 1.5115 7.0941 1.5572 21 6 0.3844 6.4058 1.1951 22 1 -0.3125 6.8413 0.4943 23 6 0.1374 5.1485 1.7289 24 7 1.0344 4.5741 2.5022 25 14 -1.4679 4.2717 1.3501 26 1 -1.3044 3.4467 0.1262 27 1 -1.8352 3.3961 2.4918 28 1 -2.5403 5.2753 1.1309 29 6 2.6356 6.5563 2.3385 30 6 4.0668 2.5734 0.0001 31 6 3.4598 1.2937 -0.0005 32 8 4.1430 0.2798 -0.0015 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8900 35 1 -0.3634 0.5139 -0.8898 36 1 0.2344 2.2974 0.0109 37 1 2.1673 6.0377 0.2065 38 1 5.3066 6.8806 1.3931 39 1 5.1025 8.6415 1.2077 40 1 2.2032 9.1728 3.2832 41 1 3.3417 9.8370 2.0607 42 1 3.0850 9.4977 -0.2052 43 1 1.9879 8.2871 -0.9148 44 1 0.8617 3.6956 2.8755 45 1 3.1002 5.7294 1.8016 46 1 2.2835 6.2173 3.3127 47 1 5.1426 2.6681 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047112734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:39 Heat of formation + Delta-G solvation = 0.619475 kcal Electronic energy + Delta-G solvation = -33928.221005 eV Core-core repulsion = 29693.567993 eV Total energy + Delta-G solvation = -4234.653012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.85182 -41.86659 -39.94665 -38.95156 -38.70248 -35.58070 -35.05864 -32.87165 -32.32659 -32.13439 -31.53861 -29.53111 -28.51618 -27.12058 -25.61867 -24.90276 -24.22590 -23.10855 -21.72907 -21.27957 -20.71135 -20.30285 -19.20634 -18.84013 -18.41500 -17.34636 -17.27991 -17.07751 -16.81294 -16.44960 -16.22026 -16.01077 -15.62387 -15.33522 -15.21408 -15.13640 -14.59906 -14.40761 -14.10830 -13.96735 -13.89522 -13.77011 -13.46183 -13.34119 -13.15145 -13.08559 -12.74255 -12.60039 -12.48021 -12.37878 -12.31198 -11.94531 -11.72887 -11.43755 -11.24791 -11.09423 -10.81768 -10.78917 -10.59769 -10.44025 -9.31355 -8.88182 -8.72538 -7.91623 -5.31591 -0.36260 0.11525 1.26421 1.50678 1.52406 1.67720 1.77925 2.12032 2.28107 2.33592 2.64785 3.16246 3.39517 3.57154 3.63367 3.69584 3.83671 3.94132 3.99492 4.05893 4.25027 4.27277 4.35349 4.41536 4.45181 4.45346 4.61426 4.65157 4.71046 4.80512 4.87577 4.93910 5.03145 5.08394 5.16970 5.25837 5.33438 5.40103 5.49311 5.53529 5.56070 5.71147 5.75234 5.79548 5.85926 6.12854 6.17024 6.65372 6.91788 6.99126 7.20408 7.65429 8.37096 9.08956 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.005640 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.744921 B = 4962.964985 C = 6575.011321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.313 6.313 3 C -0.057 4.057 4 C 0.058 3.942 5 N -0.516 5.516 6 H 0.434 0.566 7 C 0.153 3.847 8 C 0.541 3.459 9 O -0.554 6.554 10 N -0.678 5.678 11 C 0.150 3.850 12 H 0.077 0.923 13 C -0.119 4.119 14 C -0.119 4.119 15 H 0.078 0.922 16 C -0.115 4.115 17 C 0.140 3.860 18 H 0.079 0.921 19 C -0.130 4.130 20 N -0.607 5.607 21 C -0.259 4.259 22 H 0.097 0.903 23 C -0.045 4.045 24 N -0.911 5.911 25 Si 0.916 3.084 26 H -0.251 1.251 27 H -0.300 1.300 28 H -0.275 1.275 29 C 0.151 3.849 30 C -0.247 4.247 31 C 0.389 3.611 32 O -0.570 6.570 33 H 0.129 0.871 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.429 0.571 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.251 0.749 45 H 0.052 0.948 46 H 0.004 0.996 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 8.190 -5.631 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.225 6.225 3 C -0.108 4.108 4 C -0.072 4.072 5 N -0.128 5.128 6 H 0.279 0.721 7 C 0.036 3.964 8 C 0.325 3.675 9 O -0.434 6.434 10 N -0.343 5.343 11 C 0.046 3.954 12 H 0.095 0.905 13 C -0.157 4.157 14 C -0.139 4.139 15 H 0.096 0.904 16 C -0.153 4.153 17 C 0.034 3.966 18 H 0.097 0.903 19 C -0.169 4.169 20 N -0.334 5.334 21 C -0.388 4.388 22 H 0.115 0.885 23 C -0.242 4.242 24 N -0.557 5.557 25 Si 0.744 3.256 26 H -0.177 1.177 27 H -0.227 1.227 28 H -0.200 1.200 29 C 0.026 3.974 30 C -0.274 4.274 31 C 0.285 3.715 32 O -0.462 6.462 33 H 0.147 0.853 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.200 0.800 37 H 0.284 0.716 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.022 0.978 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.754 7.400 -5.660 9.715 hybrid contribution -1.873 -0.563 0.794 2.111 sum -4.626 6.837 -4.866 9.583 Atomic orbital electron populations 1.23478 0.77171 1.06314 1.01939 1.86184 1.22533 1.24177 1.89652 1.20177 0.94122 0.85364 1.11125 1.22033 0.99657 0.83874 1.01680 1.41329 1.05150 1.09664 1.56692 0.72132 1.20462 0.83468 0.95819 0.96660 1.17986 0.86888 0.84030 0.78613 1.90717 1.14090 1.86462 1.52136 1.47663 1.14417 1.04915 1.67342 1.21050 0.95025 0.81262 0.98054 0.90502 1.22050 0.97214 1.02503 0.93945 1.22771 0.96430 0.97002 0.97650 0.90414 1.22941 0.97222 0.96770 0.98353 1.21935 0.95997 0.85362 0.93285 0.90269 1.22461 0.96608 0.98573 0.99271 1.45167 1.18279 1.08047 1.61874 1.19601 0.99501 0.98211 1.21482 0.88524 1.25532 0.99455 0.99392 0.99784 1.70202 1.33739 1.15847 1.35872 0.86138 0.82078 0.79421 0.77964 1.17691 1.22697 1.19971 1.21876 0.86635 0.94534 0.94376 1.22154 1.01742 0.90520 1.13023 1.16991 0.86985 0.89584 0.77906 1.90743 1.66716 1.38740 1.49968 0.85288 0.92746 0.91102 0.79977 0.71618 0.93289 0.88607 0.92901 0.88329 0.87421 0.91429 0.93911 0.93073 0.97769 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.31 -11.40 10.33 -78.55 -0.81 -12.21 16 3 C -0.06 -2.24 6.71 22.54 0.15 -2.09 16 4 C 0.06 2.01 9.76 83.58 0.82 2.83 16 5 N -0.52 -18.64 4.12 -184.22 -0.76 -19.40 16 6 H 0.43 15.45 4.02 -92.71 -0.37 15.08 16 7 C 0.15 5.98 6.75 40.56 0.27 6.25 16 8 C 0.54 20.99 5.99 86.85 0.52 21.51 16 9 O -0.55 -23.23 14.84 -3.77 -0.06 -23.29 16 10 N -0.68 -23.39 2.76 -445.20 -1.23 -24.62 16 11 C 0.15 4.30 2.74 44.99 0.12 4.42 16 12 H 0.08 2.11 8.10 -2.38 -0.02 2.09 16 13 C -0.12 -3.43 5.14 30.93 0.16 -3.27 16 14 C -0.12 -3.77 4.33 -9.05 -0.04 -3.81 16 15 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 16 C -0.11 -2.99 6.18 32.18 0.20 -2.79 16 17 C 0.14 3.96 4.30 45.79 0.20 4.16 16 18 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 19 C -0.13 -3.03 5.42 30.88 0.17 -2.86 16 20 N -0.61 -22.24 1.76 -664.45 -1.17 -23.41 16 21 C -0.26 -10.13 8.11 84.03 0.68 -9.45 16 22 H 0.10 3.55 7.83 -2.91 -0.02 3.53 16 23 C -0.04 -1.82 3.27 84.86 0.28 -1.55 16 24 N -0.91 -41.35 9.46 21.65 0.20 -41.15 16 25 Si 0.92 32.39 28.00 68.60 1.92 34.31 16 26 H -0.25 -7.43 5.77 99.48 0.57 -6.86 16 27 H -0.30 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 29 C 0.15 6.02 3.93 86.85 0.34 6.36 16 30 C -0.25 -10.34 9.53 22.63 0.22 -10.12 16 31 C 0.39 17.40 6.78 23.93 0.16 17.56 16 32 O -0.57 -29.20 17.71 8.97 0.16 -29.04 16 33 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.29 7.65 -2.39 -0.02 1.27 16 35 H 0.07 1.43 7.67 -2.39 -0.02 1.42 16 36 H 0.18 5.39 3.79 -2.91 -0.01 5.38 16 37 H 0.43 15.25 2.46 -92.71 -0.23 15.03 16 38 H 0.05 1.69 6.60 -2.39 -0.02 1.68 16 39 H 0.10 2.13 7.97 -2.39 -0.02 2.11 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.10 1.91 7.75 -2.39 -0.02 1.89 16 42 H 0.11 1.80 8.00 -2.39 -0.02 1.78 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.25 11.83 8.31 -92.71 -0.77 11.06 16 45 H 0.05 2.22 3.64 -15.30 -0.06 2.16 16 46 H 0.00 0.20 7.03 -2.39 -0.02 0.18 16 47 H 0.16 6.55 7.58 -2.91 -0.02 6.53 16 Total: -1.00 -60.21 346.82 3.88 -56.33 By element: Atomic # 1 Polarization: 53.83 SS G_CDS: 0.26 Total: 54.09 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 5.36 Total: 28.39 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -2.96 Total: -108.58 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: -0.71 Total: -64.54 kcal Atomic # 14 Polarization: 32.39 SS G_CDS: 1.92 Total: 34.31 kcal Total: -60.21 3.88 -56.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047112734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.954 kcal (2) G-P(sol) polarization free energy of solvation -60.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds