Wall clock time and date at job start Wed Apr 1 2020 04:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36007 * 117.00052 * 2 1 4 4 C 1.35856 * 120.31419 * 0.02562 * 3 2 1 5 5 N 1.35442 * 120.77574 * 179.72376 * 4 3 2 6 6 H 0.96997 * 119.30019 * 180.25635 * 5 4 3 7 7 C 1.36431 * 121.40730 * 0.52235 * 5 4 3 8 8 C 1.48074 * 119.71555 * 179.75225 * 7 5 4 9 9 O 1.21516 * 120.00274 * 229.31109 * 8 7 5 10 10 N 1.34784 * 120.00046 * 49.31737 * 8 7 5 11 11 C 1.47849 * 122.22176 * 355.33022 * 10 8 7 12 12 C 1.52713 * 111.05666 * 127.49491 * 11 10 8 13 13 C 1.53866 * 111.52766 * 48.52695 * 12 11 10 14 14 C 1.51078 * 107.34853 * 303.07571 * 13 12 11 15 15 H 1.09009 * 108.73099 * 308.52686 * 14 13 12 16 16 C 1.45722 * 122.22672 * 175.30236 * 10 8 7 17 17 H 1.08998 * 111.63766 * 119.17556 * 16 10 8 18 18 C 1.53221 * 115.86519 * 349.99760 * 16 10 8 19 19 C 1.55471 * 101.27531 * 206.61481 * 18 16 10 20 20 N 1.45019 * 119.19787 * 183.25737 * 14 13 12 21 21 C 1.36938 * 126.56373 * 28.77628 * 20 14 13 22 22 H 1.08006 * 119.99668 * 359.97438 * 21 20 14 23 23 C 1.38814 * 120.00389 * 180.02562 * 21 20 14 24 24 N 1.31622 * 119.99473 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00067 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46957 * 59.99867 * 25 23 21 27 27 H 1.48502 * 109.46789 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46844 * 299.99716 * 25 23 21 29 29 C 1.36174 * 120.56756 * 359.48066 * 7 5 4 30 30 C 1.41584 * 120.31561 * 179.97438 * 3 2 1 31 31 O 1.22260 * 120.64701 * 0.03919 * 30 3 2 32 32 H 1.09008 * 109.47023 * 60.00268 * 1 2 3 33 33 H 1.08997 * 109.47688 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47359 * 300.00701 * 1 2 3 35 35 H 1.07992 * 119.60993 * 359.97438 * 4 3 2 36 36 H 1.08993 * 109.16507 * 7.08329 * 11 10 8 37 37 H 1.09005 * 109.15895 * 247.89345 * 11 10 8 38 38 H 1.09004 * 109.06690 * 288.00118 * 12 11 10 39 39 H 1.09001 * 109.07129 * 169.05852 * 12 11 10 40 40 H 1.09005 * 109.87734 * 62.53568 * 13 12 11 41 41 H 1.09006 * 109.88254 * 183.53861 * 13 12 11 42 42 H 1.09001 * 110.77797 * 88.82328 * 18 16 10 43 43 H 1.09000 * 111.60360 * 324.76283 * 18 16 10 44 44 H 1.09000 * 109.96333 * 263.68256 * 19 18 16 45 45 H 1.08992 * 109.96569 * 142.43795 * 19 18 16 46 46 H 0.97002 * 119.99524 * 179.97438 * 24 23 21 47 47 H 1.07994 * 120.41167 * 180.27214 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3128 2.3553 0.0005 5 7 1.9179 3.5670 0.0061 6 1 1.3733 4.3695 0.0102 7 6 3.2773 3.6828 0.0008 8 6 3.8995 5.0265 0.0017 9 8 4.7741 5.2916 -0.7992 10 7 3.4959 5.9554 0.8909 11 6 2.3690 5.7212 1.8190 12 6 2.7784 6.0069 3.2623 13 6 3.4948 7.3628 3.3881 14 6 4.6842 7.3320 2.4571 15 1 5.2624 6.4299 2.6575 16 6 4.1414 7.2572 1.0019 17 1 3.4453 8.0700 0.7950 18 6 5.4493 7.4234 0.2213 19 6 6.1675 8.5172 1.0608 20 7 5.5876 8.4660 2.4258 21 6 5.8545 9.3251 3.4582 22 1 5.3692 9.1887 4.4134 23 6 6.7480 10.3719 3.2768 24 7 7.3390 10.5383 2.1126 25 14 7.1115 11.5442 4.6850 26 1 7.6768 10.7841 5.8285 27 1 8.0906 12.5670 4.2373 28 1 5.8554 12.2139 5.1082 29 6 4.0669 2.5733 0.0003 30 6 3.4599 1.2937 0.0005 31 8 4.1429 0.2797 0.0003 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 0.2344 2.2973 0.0005 36 1 2.0478 4.6829 1.7371 37 1 1.5396 6.3740 1.5466 38 1 3.4472 5.2175 3.6056 39 1 1.8875 6.0151 3.8902 40 1 2.8186 8.1674 3.0993 41 1 3.8300 7.5111 4.4147 42 1 5.2530 7.7749 -0.7917 43 1 6.0280 6.4999 0.2065 44 1 5.9941 9.4987 0.6196 45 1 7.2370 8.3116 1.1030 46 1 7.9631 11.2700 1.9857 47 1 5.1427 2.6679 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049595057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:58 Heat of formation + Delta-G solvation = -13.286046 kcal Electronic energy + Delta-G solvation = -31585.331314 eV Core-core repulsion = 27350.075314 eV Total energy + Delta-G solvation = -4235.256001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79496 -40.41377 -38.70310 -37.92288 -37.72182 -35.62985 -32.90158 -32.41053 -31.82743 -30.97502 -29.05939 -28.44856 -27.95438 -25.67109 -24.61426 -23.63375 -23.44495 -21.74444 -21.38639 -20.24567 -19.75931 -19.11465 -18.13478 -17.37645 -16.72671 -16.53675 -16.40705 -15.87192 -15.69487 -15.38600 -14.88527 -14.67122 -14.60587 -14.56795 -14.25996 -14.14095 -13.73339 -13.52115 -13.28150 -13.17619 -12.98295 -12.63143 -12.45200 -12.04019 -11.89559 -11.78832 -11.69841 -11.26832 -10.95199 -10.84024 -10.75867 -10.64987 -10.22062 -10.19484 -9.99799 -9.84836 -9.70611 -9.67272 -9.35359 -8.66953 -8.56369 -7.93665 -6.91780 -5.76605 -3.11665 0.63258 0.90516 2.09634 2.44373 2.83792 2.95508 3.36387 3.41043 3.42694 3.46114 3.85322 4.10784 4.36380 4.40416 4.52980 4.64349 4.72494 4.77051 4.81914 4.97307 5.07898 5.16114 5.23873 5.24361 5.32891 5.47988 5.50799 5.59246 5.68282 5.79353 5.86920 5.89312 6.04121 6.13252 6.21692 6.28108 6.38997 6.40617 6.55580 6.59615 6.73132 6.88337 6.97631 7.23241 7.50716 7.56555 7.75948 7.82505 7.87233 8.17501 9.12047 9.75876 10.42544 11.35262 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.002600 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.429396 B =10764.952093 C =11226.149102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.031 4.031 4 C 0.023 3.977 5 N -0.564 5.564 6 H 0.423 0.577 7 C 0.139 3.861 8 C 0.555 3.445 9 O -0.493 6.493 10 N -0.589 5.589 11 C 0.095 3.905 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.159 3.841 15 H 0.020 0.980 16 C 0.114 3.886 17 H 0.089 0.911 18 C -0.131 4.131 19 C 0.172 3.828 20 N -0.591 5.591 21 C -0.230 4.230 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C -0.227 4.227 30 C 0.403 3.597 31 O -0.497 6.497 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.169 0.831 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.254 0.746 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.774 -13.373 -3.263 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.200 6.200 3 C -0.083 4.083 4 C -0.103 4.103 5 N -0.179 5.179 6 H 0.261 0.739 7 C 0.027 3.973 8 C 0.339 3.661 9 O -0.366 6.366 10 N -0.322 5.322 11 C -0.028 4.028 12 C -0.168 4.168 13 C -0.154 4.154 14 C 0.049 3.951 15 H 0.037 0.963 16 C 0.011 3.989 17 H 0.107 0.893 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.316 5.316 21 C -0.358 4.358 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.253 4.253 30 C 0.292 3.708 31 O -0.381 6.381 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.186 0.814 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.669 -13.803 -3.678 23.507 hybrid contribution -0.537 1.203 0.811 1.547 sum -19.206 -12.600 -2.867 23.149 Atomic orbital electron populations 1.23132 0.79188 1.04517 1.00893 1.86286 1.20308 1.24359 1.89022 1.20436 0.94816 0.84640 1.08359 1.21631 0.98690 0.84207 1.05797 1.40986 1.05010 1.08544 1.63351 0.73854 1.20485 0.82939 0.96074 0.97813 1.17941 0.83701 0.82446 0.82052 1.90906 1.29830 1.78019 1.37862 1.48119 1.33787 1.15519 1.34742 1.22044 0.88617 1.01388 0.90760 1.21875 1.01191 0.99293 0.94405 1.21434 0.97422 0.95256 1.01333 1.20779 0.90584 0.92289 0.91407 0.96267 1.22606 0.94945 0.81550 0.99833 0.89345 1.22939 0.94410 1.01287 0.98299 1.21765 0.95641 0.95212 0.82682 1.44074 1.47099 1.30290 1.10144 1.18924 1.21349 1.04981 0.90590 0.90370 1.24813 0.99279 0.98965 0.97128 1.69926 1.31981 1.32669 1.21986 0.86221 0.77722 0.80608 0.81310 1.21143 1.21575 1.21174 1.22348 1.01956 0.90402 1.10622 1.16772 0.86087 0.89769 0.78127 1.90859 1.65743 1.37537 1.43962 0.92774 0.87915 0.92723 0.81376 0.90376 0.90687 0.91468 0.90590 0.91591 0.91137 0.91675 0.90255 0.92334 0.94050 0.93559 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.16 10.33 -35.59 -0.37 -3.53 16 3 C -0.03 -0.34 6.71 -39.16 -0.26 -0.60 16 4 C 0.02 0.15 10.22 -16.81 -0.17 -0.02 16 5 N -0.56 -3.87 3.80 -9.58 -0.04 -3.91 16 6 H 0.42 1.69 7.28 -40.82 -0.30 1.39 16 7 C 0.14 1.53 5.74 -82.53 -0.47 1.05 16 8 C 0.55 7.53 7.23 -12.22 -0.09 7.44 16 9 O -0.49 -8.51 13.94 5.35 0.07 -8.43 16 10 N -0.59 -7.50 2.91 -165.15 -0.48 -7.98 16 11 C 0.09 0.83 5.44 -3.45 -0.02 0.81 16 12 C -0.13 -1.34 5.93 -26.43 -0.16 -1.50 16 13 C -0.12 -1.74 5.44 -27.25 -0.15 -1.88 16 14 C 0.16 3.01 2.59 -68.37 -0.18 2.83 16 15 H 0.02 0.41 8.06 -51.92 -0.42 -0.01 16 16 C 0.11 1.89 3.31 -66.91 -0.22 1.67 16 17 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 18 C -0.13 -2.53 4.88 -25.30 -0.12 -2.66 16 19 C 0.17 4.08 5.46 -1.69 -0.01 4.07 16 20 N -0.59 -14.26 3.34 -163.28 -0.55 -14.80 16 21 C -0.23 -6.08 9.94 -15.06 -0.15 -6.23 16 22 H 0.08 1.97 7.33 -52.48 -0.38 1.58 16 23 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 24 N -0.92 -26.38 10.46 55.49 0.58 -25.80 16 25 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 29 C -0.23 -2.99 9.63 -39.03 -0.38 -3.36 16 30 C 0.40 5.85 6.78 -37.02 -0.25 5.60 16 31 O -0.50 -9.26 17.71 -11.15 -0.20 -9.46 16 32 H 0.05 0.18 7.66 -51.92 -0.40 -0.22 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.17 7.66 -51.93 -0.40 -0.22 16 35 H 0.17 0.41 6.21 -52.49 -0.33 0.08 16 36 H 0.08 0.51 4.97 -51.93 -0.26 0.25 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.98 8.12 -51.93 -0.42 0.55 16 41 H 0.07 1.14 7.73 -51.93 -0.40 0.73 16 42 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 43 H 0.08 1.62 6.39 -51.93 -0.33 1.28 16 44 H 0.06 1.52 7.19 -51.93 -0.37 1.15 16 45 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -35.85 369.57 -8.67 -44.52 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.51 Total: -0.68 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.73 Total: 8.07 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.48 Total: -52.50 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.49 Total: -21.42 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.85 -8.67 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049595057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.233 kcal (2) G-P(sol) polarization free energy of solvation -35.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds