Wall clock time and date at job start Wed Apr 1 2020 04:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36007 * 117.00052 * 2 1 4 4 C 1.35856 * 120.31419 * 0.02562 * 3 2 1 5 5 N 1.35442 * 120.77574 * 179.72376 * 4 3 2 6 6 H 0.96997 * 119.30019 * 180.25635 * 5 4 3 7 7 C 1.36431 * 121.40730 * 0.52235 * 5 4 3 8 8 C 1.48074 * 119.71555 * 179.75225 * 7 5 4 9 9 O 1.21516 * 120.00274 * 229.31109 * 8 7 5 10 10 N 1.34784 * 120.00046 * 49.31737 * 8 7 5 11 11 C 1.47849 * 122.22176 * 355.33022 * 10 8 7 12 12 C 1.52713 * 111.05666 * 127.49491 * 11 10 8 13 13 C 1.53866 * 111.52766 * 48.52695 * 12 11 10 14 14 C 1.51078 * 107.34853 * 303.07571 * 13 12 11 15 15 H 1.09009 * 108.73099 * 308.52686 * 14 13 12 16 16 C 1.45722 * 122.22672 * 175.30236 * 10 8 7 17 17 H 1.08998 * 111.63766 * 119.17556 * 16 10 8 18 18 C 1.53221 * 115.86519 * 349.99760 * 16 10 8 19 19 C 1.55471 * 101.27531 * 206.61481 * 18 16 10 20 20 N 1.45019 * 119.19787 * 183.25737 * 14 13 12 21 21 C 1.36938 * 126.56373 * 28.77628 * 20 14 13 22 22 H 1.08006 * 119.99668 * 359.97438 * 21 20 14 23 23 C 1.38814 * 120.00389 * 180.02562 * 21 20 14 24 24 N 1.31622 * 119.99473 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00067 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46957 * 59.99867 * 25 23 21 27 27 H 1.48502 * 109.46789 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46844 * 299.99716 * 25 23 21 29 29 C 1.36174 * 120.56756 * 359.48066 * 7 5 4 30 30 C 1.41584 * 120.31561 * 179.97438 * 3 2 1 31 31 O 1.22260 * 120.64701 * 0.03919 * 30 3 2 32 32 H 1.09008 * 109.47023 * 60.00268 * 1 2 3 33 33 H 1.08997 * 109.47688 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47359 * 300.00701 * 1 2 3 35 35 H 1.07992 * 119.60993 * 359.97438 * 4 3 2 36 36 H 1.08993 * 109.16507 * 7.08329 * 11 10 8 37 37 H 1.09005 * 109.15895 * 247.89345 * 11 10 8 38 38 H 1.09004 * 109.06690 * 288.00118 * 12 11 10 39 39 H 1.09001 * 109.07129 * 169.05852 * 12 11 10 40 40 H 1.09005 * 109.87734 * 62.53568 * 13 12 11 41 41 H 1.09006 * 109.88254 * 183.53861 * 13 12 11 42 42 H 1.09001 * 110.77797 * 88.82328 * 18 16 10 43 43 H 1.09000 * 111.60360 * 324.76283 * 18 16 10 44 44 H 1.09000 * 109.96333 * 263.68256 * 19 18 16 45 45 H 1.08992 * 109.96569 * 142.43795 * 19 18 16 46 46 H 0.97002 * 119.99524 * 179.97438 * 24 23 21 47 47 H 1.07994 * 120.41167 * 180.27214 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3128 2.3553 0.0005 5 7 1.9179 3.5670 0.0061 6 1 1.3733 4.3695 0.0102 7 6 3.2773 3.6828 0.0008 8 6 3.8995 5.0265 0.0017 9 8 4.7741 5.2916 -0.7992 10 7 3.4959 5.9554 0.8909 11 6 2.3690 5.7212 1.8190 12 6 2.7784 6.0069 3.2623 13 6 3.4948 7.3628 3.3881 14 6 4.6842 7.3320 2.4571 15 1 5.2624 6.4299 2.6575 16 6 4.1414 7.2572 1.0019 17 1 3.4453 8.0700 0.7950 18 6 5.4493 7.4234 0.2213 19 6 6.1675 8.5172 1.0608 20 7 5.5876 8.4660 2.4258 21 6 5.8545 9.3251 3.4582 22 1 5.3692 9.1887 4.4134 23 6 6.7480 10.3719 3.2768 24 7 7.3390 10.5383 2.1126 25 14 7.1115 11.5442 4.6850 26 1 7.6768 10.7841 5.8285 27 1 8.0906 12.5670 4.2373 28 1 5.8554 12.2139 5.1082 29 6 4.0669 2.5733 0.0003 30 6 3.4599 1.2937 0.0005 31 8 4.1429 0.2797 0.0003 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 0.2344 2.2973 0.0005 36 1 2.0478 4.6829 1.7371 37 1 1.5396 6.3740 1.5466 38 1 3.4472 5.2175 3.6056 39 1 1.8875 6.0151 3.8902 40 1 2.8186 8.1674 3.0993 41 1 3.8300 7.5111 4.4147 42 1 5.2530 7.7749 -0.7917 43 1 6.0280 6.4999 0.2065 44 1 5.9941 9.4987 0.6196 45 1 7.2370 8.3116 1.1030 46 1 7.9631 11.2700 1.9857 47 1 5.1427 2.6679 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049595057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:56 Heat of formation + Delta-G solvation = -39.166441 kcal Electronic energy + Delta-G solvation = -31586.453573 eV Core-core repulsion = 27350.075314 eV Total energy + Delta-G solvation = -4236.378259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.74083 -41.51619 -39.73351 -38.92197 -38.77713 -37.02493 -34.31325 -34.00403 -32.83181 -31.95287 -30.72523 -29.75679 -28.41107 -26.87701 -26.36369 -24.74770 -24.25239 -22.92673 -22.72632 -21.64496 -21.08390 -19.99020 -19.07549 -18.59152 -18.12082 -17.38652 -17.36754 -17.14005 -16.75639 -16.54061 -16.32661 -15.81358 -15.60785 -15.54641 -15.42039 -15.23301 -14.98062 -14.81927 -14.35035 -14.24260 -14.18380 -13.91275 -13.81324 -13.46257 -13.17122 -12.90603 -12.68941 -12.39374 -12.35646 -12.25431 -12.14444 -12.00476 -11.81031 -11.73895 -11.60278 -11.51104 -11.04718 -10.73852 -10.61976 -10.46076 -9.75578 -8.91893 -8.77444 -7.84210 -5.20924 -0.36315 0.14470 1.16345 1.34873 1.46700 1.49956 1.55929 1.93221 2.33656 2.50326 2.52420 2.93019 3.34655 3.38163 3.54790 3.67778 3.80888 3.85462 3.89556 3.99618 4.00877 4.18135 4.31216 4.36660 4.42483 4.50955 4.51985 4.53923 4.57255 4.59898 4.68654 4.85311 4.86954 4.96754 5.00983 5.06785 5.14202 5.29486 5.34136 5.43662 5.49082 5.54562 5.59385 5.71493 5.82371 6.15529 6.18048 6.30533 6.75296 6.92155 7.05490 7.75908 8.44608 9.27209 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.002600 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.429396 B =10764.952093 C =11226.149102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.325 6.325 3 C -0.059 4.059 4 C 0.075 3.925 5 N -0.532 5.532 6 H 0.447 0.553 7 C 0.163 3.837 8 C 0.556 3.444 9 O -0.536 6.536 10 N -0.583 5.583 11 C 0.087 3.913 12 C -0.122 4.122 13 C -0.111 4.111 14 C 0.149 3.851 15 H -0.004 1.004 16 C 0.135 3.865 17 H 0.104 0.896 18 C -0.116 4.116 19 C 0.180 3.820 20 N -0.611 5.611 21 C -0.232 4.232 22 H 0.090 0.910 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.977 3.023 26 H -0.280 1.280 27 H -0.300 1.300 28 H -0.270 1.270 29 C -0.249 4.249 30 C 0.381 3.619 31 O -0.571 6.571 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.030 0.970 45 H -0.004 1.004 46 H 0.246 0.754 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.803 -13.281 -2.221 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.238 6.238 3 C -0.109 4.109 4 C -0.053 4.053 5 N -0.147 5.147 6 H 0.290 0.710 7 C 0.048 3.952 8 C 0.341 3.659 9 O -0.412 6.412 10 N -0.315 5.315 11 C -0.033 4.033 12 C -0.160 4.160 13 C -0.150 4.150 14 C 0.041 3.959 15 H 0.013 0.987 16 C 0.030 3.970 17 H 0.122 0.878 18 C -0.155 4.155 19 C 0.055 3.945 20 N -0.336 5.336 21 C -0.361 4.361 22 H 0.108 0.892 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.805 3.195 26 H -0.207 1.207 27 H -0.226 1.226 28 H -0.196 1.196 29 C -0.276 4.276 30 C 0.277 3.723 31 O -0.462 6.462 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.014 0.986 46 H 0.055 0.945 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.815 -13.694 -2.598 28.461 hybrid contribution 1.255 1.199 0.507 1.808 sum -23.560 -12.494 -2.090 26.750 Atomic orbital electron populations 1.23527 0.76131 1.06037 1.03212 1.86243 1.23505 1.24602 1.89487 1.20082 0.93333 0.86490 1.10973 1.22330 1.00663 0.81979 1.00321 1.41135 1.03449 1.10167 1.59929 0.70995 1.19845 0.84549 0.93539 0.97274 1.18183 0.83067 0.83052 0.81571 1.90899 1.31654 1.78829 1.39825 1.48117 1.34400 1.13745 1.35262 1.22500 0.87794 1.04362 0.88643 1.21870 1.02125 0.95612 0.96412 1.21413 0.95823 0.98694 0.99056 1.21000 0.91174 0.89152 0.94574 0.98662 1.22167 0.93971 0.84020 0.96803 0.87849 1.22671 0.95793 0.98794 0.98197 1.21464 0.93847 0.95295 0.83893 1.44321 1.48439 1.31166 1.09636 1.19357 1.20485 1.04660 0.91571 0.89243 1.25672 0.99846 1.01134 0.99488 1.70161 1.32945 1.33163 1.24051 0.85176 0.77642 0.78276 0.78389 1.20668 1.22605 1.19589 1.22120 1.01435 0.91240 1.12771 1.17249 0.88242 0.89095 0.77726 1.90812 1.67415 1.39184 1.48790 0.90382 0.87297 0.90030 0.75175 0.87434 0.86260 0.92664 0.86321 0.90680 0.92722 0.90915 0.91683 0.95149 0.98601 0.94498 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.14 16 2 O -0.33 -6.51 10.33 -78.49 -0.81 -7.33 16 3 C -0.06 -1.15 6.71 22.54 0.15 -1.00 16 4 C 0.08 0.53 10.22 83.58 0.85 1.38 16 5 N -0.53 -4.15 3.80 -184.21 -0.70 -4.85 16 6 H 0.45 -0.09 7.28 -92.71 -0.68 -0.76 16 7 C 0.16 3.17 5.74 40.56 0.23 3.40 16 8 C 0.56 14.08 7.23 86.85 0.63 14.71 16 9 O -0.54 -18.62 13.94 -3.77 -0.05 -18.67 16 10 N -0.58 -12.99 2.91 -794.69 -2.32 -15.31 16 11 C 0.09 0.98 5.44 86.03 0.47 1.45 16 12 C -0.12 -1.92 5.93 30.79 0.18 -1.74 16 13 C -0.11 -3.02 5.44 30.26 0.16 -2.86 16 14 C 0.15 5.58 2.59 45.50 0.12 5.70 16 15 H 0.00 -0.17 8.06 -2.38 -0.02 -0.19 16 16 C 0.13 4.27 3.31 46.07 0.15 4.42 16 17 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 18 C -0.12 -4.64 4.88 31.52 0.15 -4.49 16 19 C 0.18 9.12 5.46 86.87 0.47 9.59 16 20 N -0.61 -30.31 3.34 -670.51 -2.24 -32.55 16 21 C -0.23 -12.45 9.94 84.03 0.84 -11.61 16 22 H 0.09 4.48 7.33 -2.91 -0.02 4.46 16 23 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 24 N -0.95 -57.56 10.46 21.65 0.23 -57.33 16 25 Si 0.98 44.92 29.55 68.60 2.03 46.94 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 C -0.25 -6.74 9.63 22.63 0.22 -6.53 16 30 C 0.38 11.46 6.78 23.93 0.16 11.62 16 31 O -0.57 -23.26 17.71 8.97 0.16 -23.10 16 32 H 0.08 0.06 7.66 -2.38 -0.02 0.04 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.01 7.66 -2.39 -0.02 -0.01 16 35 H 0.23 -1.07 6.21 -2.91 -0.02 -1.09 16 36 H 0.11 0.60 4.97 -2.39 -0.01 0.59 16 37 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.12 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.92 8.12 -2.38 -0.02 1.90 16 41 H 0.05 1.65 7.73 -2.38 -0.02 1.63 16 42 H 0.07 2.78 8.13 -2.39 -0.02 2.76 16 43 H 0.06 2.80 6.39 -2.39 -0.02 2.78 16 44 H 0.03 1.68 7.19 -2.39 -0.02 1.67 16 45 H 0.00 -0.25 7.81 -2.39 -0.02 -0.27 16 46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 47 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -92.02 369.57 3.00 -89.02 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 0.34 Total: 1.37 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 6.37 Total: 21.82 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -5.03 Total: -110.04 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.70 Total: -49.10 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -92.02 3.00 -89.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049595057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.849 kcal (2) G-P(sol) polarization free energy of solvation -92.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds