Wall clock time and date at job start Wed Apr 1 2020 04:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38353 * 120.34699 * 269.72707 * 4 3 2 6 6 N 1.31924 * 121.07863 * 179.70331 * 5 4 3 7 7 C 1.31693 * 121.87708 * 0.58322 * 6 5 4 8 8 C 1.39517 * 120.56889 * 359.70578 * 7 6 5 9 9 C 1.47839 * 120.55878 * 179.97438 * 8 7 6 10 10 O 1.21556 * 120.00121 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00172 * 0.02794 * 9 8 7 12 12 C 1.46506 * 119.99867 * 179.97438 * 11 9 8 13 13 H 1.08992 * 110.45325 * 327.59703 * 12 11 9 14 14 C 1.54546 * 110.50493 * 90.34457 * 12 11 9 15 15 O 1.44639 * 105.03520 * 95.01812 * 14 12 11 16 16 C 1.43244 * 105.22414 * 39.02071 * 15 14 12 17 17 C 1.52884 * 115.83891 * 90.92642 * 16 15 14 18 18 N 1.47779 * 85.78241 * 94.51155 * 17 16 15 19 19 C 1.36940 * 134.40225 * 203.86838 * 18 17 16 20 20 H 1.08002 * 119.99690 * 180.02562 * 19 18 17 21 21 C 1.38817 * 120.00267 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99419 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47604 * 60.00089 * 23 21 19 25 25 H 1.48505 * 109.47152 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47286 * 299.99646 * 23 21 19 27 27 C 1.47783 * 91.19666 * 23.87658 * 18 17 16 28 28 C 1.53473 * 106.26071 * 321.06811 * 16 15 14 29 29 C 1.38353 * 120.34879 * 90.00199 * 4 3 2 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 34 34 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 35 35 H 1.08002 * 119.45982 * 359.97367 * 5 4 3 36 36 H 1.08006 * 119.71463 * 179.68633 * 7 6 5 37 37 H 0.97000 * 120.00124 * 359.97438 * 11 9 8 38 38 H 1.09009 * 110.32595 * 213.90318 * 14 12 11 39 39 H 1.08997 * 110.33434 * 336.12336 * 14 12 11 40 40 H 1.09008 * 113.82651 * 208.73123 * 17 16 15 41 41 H 1.09007 * 113.82348 * 340.29632 * 17 16 15 42 42 H 0.96998 * 119.99349 * 179.97438 * 22 21 19 43 43 H 1.08995 * 113.82299 * 221.91317 * 27 18 17 44 44 H 1.09001 * 113.82769 * 90.33595 * 27 18 17 45 45 H 1.09000 * 110.57556 * 264.15387 * 28 16 15 46 46 H 1.09001 * 110.70161 * 141.33535 * 28 16 15 47 47 H 1.07997 * 120.85462 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2104 1.1366 1.1930 6 7 5.5249 1.0267 1.2093 7 6 6.2320 0.9709 0.0997 8 6 5.6039 1.0209 -1.1451 9 6 6.3980 0.9587 -2.3906 10 8 5.8403 1.0036 -3.4698 11 7 7.7401 0.8523 -2.3296 12 6 8.5269 0.7902 -3.5639 13 1 7.9640 0.2860 -4.3494 14 6 8.9393 2.2096 -4.0151 15 8 10.2653 2.4056 -3.4716 16 6 10.9244 1.1429 -3.6234 17 6 11.7012 0.9492 -4.9259 18 7 12.8807 1.4085 -4.1633 19 6 14.0747 1.9872 -4.5019 20 1 14.7919 2.2349 -3.7333 21 6 14.3633 2.2554 -5.8330 22 7 13.4894 1.9530 -6.7696 23 14 15.9918 3.0454 -6.2947 24 1 17.1086 2.1711 -5.8547 25 1 16.0550 3.2247 -7.7676 26 1 16.1067 4.3679 -5.6293 27 6 12.2571 0.9939 -2.8892 28 6 9.8728 0.0691 -3.3131 29 6 4.2090 1.1314 -1.1949 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 3.6697 1.1842 2.1267 36 1 7.3073 0.8860 0.1538 37 1 8.1852 0.8169 -1.4685 38 1 8.9635 2.2690 -5.1033 39 1 8.2506 2.9509 -3.6098 40 1 11.7641 -0.0895 -5.2508 41 1 11.4004 1.6288 -5.7233 42 1 13.6910 2.1408 -7.6996 43 1 12.3952 1.7089 -2.0783 44 1 12.4877 -0.0312 -2.5992 45 1 9.9478 -0.2516 -2.2741 46 1 9.9820 -0.7826 -3.9846 47 1 3.6900 1.1723 -2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053833228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:44 Heat of formation + Delta-G solvation = -16.460628 kcal Electronic energy + Delta-G solvation = -29673.318896 eV Core-core repulsion = 25437.925235 eV Total energy + Delta-G solvation = -4235.393661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.11724 -40.14679 -39.01487 -38.18496 -36.18915 -34.52303 -33.43304 -32.57703 -32.07603 -30.32389 -28.17695 -27.90312 -26.04872 -25.89163 -25.09380 -24.76181 -23.13374 -22.19485 -21.18176 -20.64461 -19.01661 -18.24254 -17.45163 -17.04397 -16.93688 -16.71857 -16.35233 -15.93816 -15.65740 -15.35389 -15.24029 -15.02594 -14.78129 -14.21747 -13.95848 -13.86747 -13.56571 -13.42080 -13.38514 -12.99067 -12.94462 -12.73741 -12.41457 -11.98090 -11.91102 -11.58519 -11.49753 -11.25233 -11.09418 -10.82692 -10.63826 -10.46187 -10.32852 -10.30659 -10.24542 -9.79196 -9.76718 -9.62574 -9.52462 -9.31703 -8.81748 -8.74508 -6.86585 -5.73230 -3.05123 0.20841 0.68438 2.52293 2.84956 3.20134 3.42743 3.46425 3.47805 3.60068 3.85752 4.21518 4.23782 4.28093 4.39848 4.45993 4.48389 4.56105 4.65365 4.75800 4.85212 4.90181 4.99769 5.02760 5.12246 5.16892 5.19332 5.24377 5.31175 5.47874 5.57074 5.60655 5.66295 5.79768 5.94356 5.98752 6.03393 6.05542 6.33769 6.37564 6.47767 6.55585 6.59126 6.94695 7.20546 7.26061 7.38787 7.49496 7.66868 7.94281 8.00723 9.07167 9.73790 10.60202 11.44131 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.001800 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.308385 B =15553.855361 C =15942.790824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.153 4.153 5 C 0.143 3.857 6 N -0.486 5.486 7 C 0.142 3.858 8 C -0.186 4.186 9 C 0.563 3.437 10 O -0.533 6.533 11 N -0.709 5.709 12 C 0.112 3.888 13 H 0.106 0.894 14 C 0.038 3.962 15 O -0.336 6.336 16 C 0.055 3.945 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.221 4.221 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.130 3.870 28 C -0.146 4.146 29 C 0.005 3.995 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.254 0.746 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.501 -3.906 15.468 30.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.155 4.155 5 C -0.014 4.014 6 N -0.193 5.193 7 C -0.016 4.016 8 C -0.191 4.191 9 C 0.349 3.651 10 O -0.410 6.410 11 N -0.361 5.361 12 C 0.007 3.993 13 H 0.124 0.876 14 C -0.040 4.040 15 O -0.255 6.255 16 C 0.014 3.986 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.004 3.996 28 C -0.185 4.185 29 C -0.022 4.022 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.983 -3.738 15.340 29.554 hybrid contribution 0.406 0.417 -0.822 1.007 sum -24.577 -3.320 14.518 28.738 Atomic orbital electron populations 1.22793 0.80458 1.03157 1.00213 1.87978 1.20041 1.27026 1.95464 1.21233 0.88479 0.85515 1.01738 1.20570 0.95962 1.04819 0.94195 1.22927 0.89928 0.90966 0.97617 1.67779 1.07876 1.12853 1.30800 1.23093 1.00455 0.91263 0.86784 1.21025 0.95128 1.07998 0.94972 1.18003 0.82198 0.76579 0.88317 1.90799 1.70973 1.49750 1.29527 1.46038 1.05907 1.74047 1.10114 1.22521 0.92335 0.97573 0.86826 0.87612 1.23806 0.85421 0.95481 0.99303 1.89022 1.24073 1.31094 1.81273 1.23795 0.91643 0.82278 1.00911 1.22609 0.84012 0.97641 0.93106 1.45822 1.17107 1.69178 1.00971 1.18950 0.91978 1.31875 0.92057 0.90255 1.24766 0.98535 1.01630 0.95476 1.69798 1.34811 1.52561 0.99768 0.86187 0.83026 0.79229 0.77237 1.21215 1.21575 1.21079 1.22503 0.87609 0.97668 0.91830 1.23086 0.92770 0.99622 1.03026 1.21641 0.92452 0.89095 0.98980 0.93810 0.93766 0.89326 0.91740 0.91642 0.82104 0.82047 0.76279 0.91034 0.89508 0.94659 0.90372 0.93625 0.92970 0.93504 0.90198 0.89048 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.02 10.69 -35.23 -0.38 -3.40 16 3 C 0.11 0.65 6.08 36.01 0.22 0.87 16 4 C -0.15 -1.23 5.52 -104.54 -0.58 -1.80 16 5 C 0.14 1.14 10.85 -17.47 -0.19 0.95 16 6 N -0.49 -4.67 10.35 -12.91 -0.13 -4.81 16 7 C 0.14 1.29 10.71 -17.13 -0.18 1.11 16 8 C -0.19 -1.90 5.89 -104.82 -0.62 -2.51 16 9 C 0.56 6.85 7.78 -12.33 -0.10 6.76 16 10 O -0.53 -8.21 16.07 5.32 0.09 -8.13 16 11 N -0.71 -7.82 5.04 -53.08 -0.27 -8.09 16 12 C 0.11 1.47 3.49 -66.20 -0.23 1.24 16 13 H 0.11 1.43 7.55 -51.93 -0.39 1.03 16 14 C 0.04 0.60 7.37 37.97 0.28 0.88 16 15 O -0.34 -6.55 11.44 -35.23 -0.40 -6.96 16 16 C 0.05 1.02 1.28 -90.66 -0.12 0.91 16 17 C 0.15 3.55 6.99 -3.40 -0.02 3.53 16 18 N -0.60 -15.74 3.71 -183.62 -0.68 -16.42 16 19 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 20 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.71 11.40 55.49 0.63 -27.08 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.13 2.63 8.47 -3.40 -0.03 2.61 16 28 C -0.15 -1.97 6.24 -25.57 -0.16 -2.13 16 29 C 0.00 0.05 9.39 -38.87 -0.37 -0.32 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 35 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.16 1.08 6.42 -52.48 -0.34 0.75 16 37 H 0.40 3.49 6.46 -40.82 -0.26 3.23 16 38 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 39 H 0.09 1.28 8.06 -51.93 -0.42 0.87 16 40 H 0.04 0.82 7.96 -51.92 -0.41 0.40 16 41 H 0.08 2.07 7.20 -51.93 -0.37 1.70 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.90 7.69 -51.93 -0.40 0.50 16 46 H 0.09 1.18 7.84 -51.93 -0.41 0.77 16 47 H 0.15 1.39 7.74 -52.49 -0.41 0.98 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -36.10 392.99 -8.23 -44.34 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.76 Total: 0.62 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -1.23 Total: 6.52 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.45 Total: -56.39 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.69 Total: -18.49 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.10 -8.23 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053833228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.877 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds