Wall clock time and date at job start Wed Apr 1 2020 04:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38353 * 120.34699 * 269.72707 * 4 3 2 6 6 N 1.31924 * 121.07863 * 179.70331 * 5 4 3 7 7 C 1.31693 * 121.87708 * 0.58322 * 6 5 4 8 8 C 1.39517 * 120.56889 * 359.70578 * 7 6 5 9 9 C 1.47839 * 120.55878 * 179.97438 * 8 7 6 10 10 O 1.21556 * 120.00121 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00172 * 0.02794 * 9 8 7 12 12 C 1.46506 * 119.99867 * 179.97438 * 11 9 8 13 13 H 1.08992 * 110.45325 * 327.59703 * 12 11 9 14 14 C 1.54546 * 110.50493 * 90.34457 * 12 11 9 15 15 O 1.44639 * 105.03520 * 95.01812 * 14 12 11 16 16 C 1.43244 * 105.22414 * 39.02071 * 15 14 12 17 17 C 1.52884 * 115.83891 * 90.92642 * 16 15 14 18 18 N 1.47779 * 85.78241 * 94.51155 * 17 16 15 19 19 C 1.36940 * 134.40225 * 203.86838 * 18 17 16 20 20 H 1.08002 * 119.99690 * 180.02562 * 19 18 17 21 21 C 1.38817 * 120.00267 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99419 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47604 * 60.00089 * 23 21 19 25 25 H 1.48505 * 109.47152 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47286 * 299.99646 * 23 21 19 27 27 C 1.47783 * 91.19666 * 23.87658 * 18 17 16 28 28 C 1.53473 * 106.26071 * 321.06811 * 16 15 14 29 29 C 1.38353 * 120.34879 * 90.00199 * 4 3 2 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 34 34 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 35 35 H 1.08002 * 119.45982 * 359.97367 * 5 4 3 36 36 H 1.08006 * 119.71463 * 179.68633 * 7 6 5 37 37 H 0.97000 * 120.00124 * 359.97438 * 11 9 8 38 38 H 1.09009 * 110.32595 * 213.90318 * 14 12 11 39 39 H 1.08997 * 110.33434 * 336.12336 * 14 12 11 40 40 H 1.09008 * 113.82651 * 208.73123 * 17 16 15 41 41 H 1.09007 * 113.82348 * 340.29632 * 17 16 15 42 42 H 0.96998 * 119.99349 * 179.97438 * 22 21 19 43 43 H 1.08995 * 113.82299 * 221.91317 * 27 18 17 44 44 H 1.09001 * 113.82769 * 90.33595 * 27 18 17 45 45 H 1.09000 * 110.57556 * 264.15387 * 28 16 15 46 46 H 1.09001 * 110.70161 * 141.33535 * 28 16 15 47 47 H 1.07997 * 120.85462 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2104 1.1366 1.1930 6 7 5.5249 1.0267 1.2093 7 6 6.2320 0.9709 0.0997 8 6 5.6039 1.0209 -1.1451 9 6 6.3980 0.9587 -2.3906 10 8 5.8403 1.0036 -3.4698 11 7 7.7401 0.8523 -2.3296 12 6 8.5269 0.7902 -3.5639 13 1 7.9640 0.2860 -4.3494 14 6 8.9393 2.2096 -4.0151 15 8 10.2653 2.4056 -3.4716 16 6 10.9244 1.1429 -3.6234 17 6 11.7012 0.9492 -4.9259 18 7 12.8807 1.4085 -4.1633 19 6 14.0747 1.9872 -4.5019 20 1 14.7919 2.2349 -3.7333 21 6 14.3633 2.2554 -5.8330 22 7 13.4894 1.9530 -6.7696 23 14 15.9918 3.0454 -6.2947 24 1 17.1086 2.1711 -5.8547 25 1 16.0550 3.2247 -7.7676 26 1 16.1067 4.3679 -5.6293 27 6 12.2571 0.9939 -2.8892 28 6 9.8728 0.0691 -3.3131 29 6 4.2090 1.1314 -1.1949 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 3.6697 1.1842 2.1267 36 1 7.3073 0.8860 0.1538 37 1 8.1852 0.8169 -1.4685 38 1 8.9635 2.2690 -5.1033 39 1 8.2506 2.9509 -3.6098 40 1 11.7641 -0.0895 -5.2508 41 1 11.4004 1.6288 -5.7233 42 1 13.6910 2.1408 -7.6996 43 1 12.3952 1.7089 -2.0783 44 1 12.4877 -0.0312 -2.5992 45 1 9.9478 -0.2516 -2.2741 46 1 9.9820 -0.7826 -3.9846 47 1 3.6900 1.1723 -2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053833228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:42 Heat of formation + Delta-G solvation = -43.779734 kcal Electronic energy + Delta-G solvation = -29674.503541 eV Core-core repulsion = 25437.925235 eV Total energy + Delta-G solvation = -4236.578306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.97228 -41.34727 -40.07357 -38.68448 -37.75190 -35.69001 -34.12798 -34.06810 -33.37680 -31.50621 -29.77837 -28.41136 -27.58349 -26.65560 -26.49957 -25.72979 -23.96288 -23.71413 -22.36721 -21.61206 -20.56056 -19.07036 -18.70332 -18.20564 -17.72496 -17.40242 -17.33709 -17.01821 -16.73432 -16.54751 -16.24245 -16.09247 -15.98982 -15.79547 -15.14973 -14.99073 -14.72484 -14.53263 -14.43075 -14.22032 -13.94685 -13.34424 -13.32772 -13.20095 -12.96074 -12.93094 -12.82972 -12.70131 -12.55991 -12.36758 -12.32945 -12.04120 -11.66813 -11.36555 -11.29295 -11.00398 -10.90964 -10.72729 -10.68226 -10.49938 -10.29146 -10.02075 -8.91370 -7.89407 -5.21927 -0.48320 0.01923 1.44281 1.48397 1.54193 1.68234 1.92688 2.47637 2.58262 2.84669 3.04976 3.23541 3.29398 3.42683 3.53388 3.58897 3.70656 3.71571 3.74268 3.81700 3.85486 4.00306 4.07714 4.28328 4.32307 4.49435 4.54417 4.57175 4.57840 4.63444 4.67359 4.75139 4.78474 4.88257 4.89917 4.91080 4.94665 4.95827 5.06873 5.18521 5.27233 5.38213 5.44540 5.51784 5.93597 6.11460 6.17081 6.38322 6.73892 6.92260 7.03794 7.61607 8.55719 9.27445 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.001800 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.308385 B =15553.855361 C =15942.790824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.106 3.894 4 C -0.153 4.153 5 C 0.144 3.856 6 N -0.503 5.503 7 C 0.145 3.855 8 C -0.199 4.199 9 C 0.566 3.434 10 O -0.571 6.571 11 N -0.697 5.697 12 C 0.125 3.875 13 H 0.105 0.895 14 C 0.035 3.965 15 O -0.363 6.363 16 C 0.074 3.926 17 C 0.146 3.854 18 N -0.641 5.641 19 C -0.233 4.233 20 H 0.083 0.917 21 C -0.070 4.070 22 N -0.955 5.955 23 Si 0.979 3.021 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.279 1.279 27 C 0.131 3.869 28 C -0.131 4.131 29 C -0.006 4.006 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.189 0.811 36 H 0.184 0.816 37 H 0.415 0.585 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.247 0.753 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.468 -4.526 18.210 32.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.029 3.971 4 C -0.155 4.155 5 C -0.012 4.012 6 N -0.211 5.211 7 C -0.013 4.013 8 C -0.205 4.205 9 C 0.354 3.646 10 O -0.451 6.451 11 N -0.350 5.350 12 C 0.020 3.980 13 H 0.123 0.877 14 C -0.043 4.043 15 O -0.282 6.282 16 C 0.033 3.967 17 C 0.020 3.980 18 N -0.368 5.368 19 C -0.362 4.362 20 H 0.101 0.899 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.807 3.193 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.205 1.205 27 C 0.006 3.994 28 C -0.169 4.169 29 C -0.033 4.033 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.206 0.794 36 H 0.201 0.799 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.134 0.866 46 H 0.122 0.878 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.959 -4.370 18.153 31.976 hybrid contribution 0.607 0.637 -1.602 1.828 sum -25.352 -3.733 16.551 30.505 Atomic orbital electron populations 1.22950 0.78994 1.03847 1.01298 1.87925 1.21745 1.28007 1.95714 1.21350 0.87128 0.85282 1.03311 1.20777 0.97138 1.03984 0.93566 1.23423 0.89654 0.89409 0.98707 1.67856 1.08715 1.13614 1.30883 1.23384 1.01468 0.90335 0.86110 1.20883 0.95220 1.09909 0.94442 1.18278 0.82337 0.75521 0.88469 1.90782 1.71696 1.51597 1.31062 1.45862 1.05531 1.73514 1.10051 1.22234 0.92505 0.95518 0.87740 0.87700 1.23910 0.84153 0.97670 0.98551 1.88993 1.25753 1.32127 1.81285 1.23398 0.92545 0.83792 0.96966 1.22584 0.84845 0.96378 0.94187 1.46247 1.16913 1.69629 1.03968 1.19381 0.93097 1.31333 0.92377 0.89876 1.25633 1.02057 1.02994 0.95597 1.70005 1.36603 1.54245 0.99564 0.85140 0.79261 0.78481 0.76387 1.19994 1.22074 1.20490 1.22749 0.87485 0.99085 0.90032 1.22999 0.90428 0.97957 1.05538 1.21758 0.92539 0.89398 0.99557 0.92226 0.93161 0.88941 0.91114 0.89138 0.79382 0.79946 0.74588 0.92505 0.88715 0.94589 0.94648 0.94397 0.92584 0.90302 0.86604 0.87834 0.83895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -5.82 10.69 -148.98 -1.59 -7.41 16 3 C 0.11 1.07 6.08 71.24 0.43 1.51 16 4 C -0.15 -2.18 5.52 -19.81 -0.11 -2.29 16 5 C 0.14 1.96 10.85 84.71 0.92 2.88 16 6 N -0.50 -8.51 10.35 -194.75 -2.01 -10.52 16 7 C 0.15 2.32 10.71 85.02 0.91 3.23 16 8 C -0.20 -3.81 5.89 -20.00 -0.12 -3.93 16 9 C 0.57 13.17 7.78 86.78 0.68 13.85 16 10 O -0.57 -17.54 16.07 -3.89 -0.06 -17.60 16 11 N -0.70 -13.90 5.04 -440.11 -2.22 -16.12 16 12 C 0.13 3.11 3.49 46.11 0.16 3.27 16 13 H 0.11 2.72 7.55 -2.39 -0.02 2.70 16 14 C 0.03 1.10 7.37 72.51 0.53 1.63 16 15 O -0.36 -14.04 11.44 -148.98 -1.70 -15.74 16 16 C 0.07 2.68 1.28 -10.66 -0.01 2.67 16 17 C 0.15 6.97 6.99 86.09 0.60 7.57 16 18 N -0.64 -33.60 3.71 -741.13 -2.75 -36.34 16 19 C -0.23 -13.52 10.70 84.03 0.90 -12.62 16 20 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.96 -59.40 11.40 21.65 0.25 -59.16 16 23 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 C 0.13 5.09 8.47 86.09 0.73 5.82 16 28 C -0.13 -3.17 6.24 31.35 0.20 -2.98 16 29 C -0.01 -0.11 9.39 22.73 0.21 0.10 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 34 H 0.09 0.45 8.09 -2.39 -0.02 0.43 16 35 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.18 1.90 6.42 -2.91 -0.02 1.88 16 37 H 0.42 5.90 6.46 -92.71 -0.60 5.31 16 38 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.09 2.78 8.06 -2.39 -0.02 2.77 16 40 H 0.04 1.69 7.96 -2.38 -0.02 1.67 16 41 H 0.04 1.97 7.20 -2.38 -0.02 1.95 16 42 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.12 2.06 7.69 -2.39 -0.02 2.04 16 46 H 0.10 2.37 7.84 -2.39 -0.02 2.35 16 47 H 0.14 2.69 7.74 -2.91 -0.02 2.67 16 Total: -1.00 -80.89 392.99 0.08 -80.80 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.40 Total: 14.53 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 7.75 Total: 18.48 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -6.73 Total: -122.14 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -3.36 Total: -40.75 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -80.89 0.08 -80.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053833228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.025 kcal (2) G-P(sol) polarization free energy of solvation -80.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds